| cellular protein complex assembly | GO:0043623 | 209 | 0.909 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.829 | |
| mitochondrial respiratory chain complex assembly | GO:0033108 | 36 | 0.760 | |
| protein complex assembly | GO:0006461 | 302 | 0.693 | |
| cytochrome complex assembly | GO:0017004 | 29 | 0.684 | |
| mitochondrion organization | GO:0007005 | 261 | 0.515 | |
| respiratory chain complex iv assembly | GO:0008535 | 18 | 0.345 | |
| mitochondrial respiratory chain complex iv biogenesis | GO:0097034 | 26 | 0.255 | |
| mitochondrial respiratory chain complex iv assembly | GO:0033617 | 18 | 0.204 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.096 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.076 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.073 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.070 | |
| proteolysis | GO:0006508 | 268 | 0.066 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.060 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.054 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.052 | |
| regulation of cellular carbohydrate metabolic process | GO:0010675 | 41 | 0.046 | |
| ion transport | GO:0006811 | 274 | 0.040 | |
| organophosphate biosynthetic process | GO:0090407 | 182 | 0.039 | |
| protein targeting | GO:0006605 | 272 | 0.039 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.038 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.038 | |
| single organism catabolic process | GO:0044712 | 619 | 0.037 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.037 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.035 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.033 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.033 | |
| mrna metabolic process | GO:0016071 | 269 | 0.032 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.031 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.031 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.029 | |
| phospholipid biosynthetic process | GO:0008654 | 89 | 0.029 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.029 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.028 | |
| protein import | GO:0017038 | 122 | 0.027 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.026 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.026 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.026 | |
| regulation of biological quality | GO:0065008 | 391 | 0.026 | |
| protein localization to organelle | GO:0033365 | 337 | 0.025 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.025 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.025 | |
| regulation of translation | GO:0006417 | 89 | 0.025 | |
| single organism developmental process | GO:0044767 | 258 | 0.024 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.024 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.024 | |
| regulation of gluconeogenesis | GO:0006111 | 16 | 0.024 | |
| translation | GO:0006412 | 230 | 0.023 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.022 | |
| response to chemical | GO:0042221 | 390 | 0.022 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.022 | |
| regulation of localization | GO:0032879 | 127 | 0.022 | |
| organic anion transport | GO:0015711 | 114 | 0.022 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.021 | |
| carbohydrate biosynthetic process | GO:0016051 | 82 | 0.021 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.021 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.021 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.021 | |
| lipid metabolic process | GO:0006629 | 269 | 0.020 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.020 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.020 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.020 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.020 | |
| regulation of molecular function | GO:0065009 | 320 | 0.019 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.019 | |
| protein catabolic process | GO:0030163 | 221 | 0.019 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.019 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.019 | |
| single organism membrane organization | GO:0044802 | 275 | 0.018 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.018 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.018 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.017 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.017 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.017 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.017 | |
| regulation of glucose metabolic process | GO:0010906 | 27 | 0.017 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.017 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.017 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.017 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.017 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.017 | |
| chemical homeostasis | GO:0048878 | 137 | 0.017 | |
| phosphorylation | GO:0016310 | 291 | 0.016 | |
| protein maturation | GO:0051604 | 76 | 0.016 | |
| mitochondrial translation | GO:0032543 | 52 | 0.016 | |
| cation homeostasis | GO:0055080 | 105 | 0.016 | |
| glucose metabolic process | GO:0006006 | 65 | 0.015 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.015 | |
| mrna processing | GO:0006397 | 185 | 0.015 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.015 | |
| lipid modification | GO:0030258 | 37 | 0.015 | |
| ion homeostasis | GO:0050801 | 118 | 0.015 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.014 | |
| ion transmembrane transport | GO:0034220 | 200 | 0.014 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.014 | |
| protein complex disassembly | GO:0043241 | 70 | 0.014 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 125 | 0.014 | |
| sporulation | GO:0043934 | 132 | 0.014 | |
| transmembrane transport | GO:0055085 | 349 | 0.014 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.014 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.014 | |
| ascospore formation | GO:0030437 | 107 | 0.014 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.013 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.013 | |
| regulation of signaling | GO:0023051 | 119 | 0.013 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.013 | |
| cellular homeostasis | GO:0019725 | 138 | 0.013 | |
| hexose biosynthetic process | GO:0019319 | 30 | 0.013 | |
| cellular respiration | GO:0045333 | 82 | 0.013 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.013 | |
| metal ion homeostasis | GO:0055065 | 79 | 0.013 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.013 | |
| membrane organization | GO:0061024 | 276 | 0.013 | |
| regulation of cellular localization | GO:0060341 | 50 | 0.013 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.013 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.013 | |
| intracellular protein transport | GO:0006886 | 319 | 0.012 | |
| monosaccharide metabolic process | GO:0005996 | 83 | 0.012 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.012 | |
| monosaccharide biosynthetic process | GO:0046364 | 31 | 0.012 | |
| protein processing | GO:0016485 | 64 | 0.012 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.012 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.012 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.012 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.012 | |
| cell division | GO:0051301 | 205 | 0.012 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.012 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.012 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.011 | |
| mitochondrial proton transporting atp synthase complex assembly | GO:0033615 | 11 | 0.011 | |
| single organism cellular localization | GO:1902580 | 375 | 0.011 | |
| cell differentiation | GO:0030154 | 161 | 0.011 | |
| autophagy | GO:0006914 | 106 | 0.011 | |
| cellular protein complex disassembly | GO:0043624 | 42 | 0.011 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.011 | |
| cellular carbohydrate metabolic process | GO:0044262 | 135 | 0.011 | |
| establishment of protein localization | GO:0045184 | 367 | 0.011 | |
| membrane fusion | GO:0061025 | 73 | 0.011 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.011 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.011 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.010 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.010 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.010 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.010 | |
| transition metal ion transport | GO:0000041 | 45 | 0.010 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 262 | 0.010 | |
| positive regulation of translation | GO:0045727 | 34 | 0.010 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.010 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.010 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.010 | |
