| endosomal transport | GO:0016197 | 86 | 0.935 | |
| vacuolar transport | GO:0007034 | 145 | 0.924 | |
| late endosome to vacuole transport | GO:0045324 | 42 | 0.763 | |
| vesicle organization | GO:0016050 | 68 | 0.747 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.708 | |
| localization within membrane | GO:0051668 | 29 | 0.680 | |
| developmental process | GO:0032502 | 261 | 0.677 | Fly |
| intralumenal vesicle formation | GO:0070676 | 7 | 0.582 | |
| single organism membrane budding | GO:1902591 | 21 | 0.558 | |
| anatomical structure development | GO:0048856 | 160 | 0.552 | Fly |
| late endosome to vacuole transport via multivesicular body sorting pathway | GO:0032511 | 26 | 0.491 | |
| single organism membrane organization | GO:0044802 | 275 | 0.453 | |
| endosome transport via multivesicular body sorting pathway | GO:0032509 | 27 | 0.405 | Fly |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.368 | Fly |
| maintenance of location in cell | GO:0051651 | 58 | 0.353 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.351 | Fly |
| single organism cellular localization | GO:1902580 | 375 | 0.330 | |
| single organism signaling | GO:0044700 | 208 | 0.307 | Fly |
| membrane organization | GO:0061024 | 276 | 0.297 | |
| membrane budding | GO:0006900 | 22 | 0.285 | |
| multi organism process | GO:0051704 | 233 | 0.285 | Fly |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.271 | Fly |
| meiotic cell cycle | GO:0051321 | 272 | 0.259 | |
| proteolysis | GO:0006508 | 268 | 0.245 | Fly |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.222 | Fly |
| mitotic cell cycle | GO:0000278 | 306 | 0.219 | |
| organelle fusion | GO:0048284 | 85 | 0.166 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.165 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.162 | |
| dna templated transcription elongation | GO:0006354 | 91 | 0.156 | |
| regulation of localization | GO:0032879 | 127 | 0.150 | |
| protein catabolic process | GO:0030163 | 221 | 0.148 | Fly |
| mitotic cell cycle phase transition | GO:0044772 | 141 | 0.145 | |
| single organism developmental process | GO:0044767 | 258 | 0.143 | Fly |
| regulation of biological quality | GO:0065008 | 391 | 0.139 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.137 | |
| nuclear division | GO:0000280 | 263 | 0.134 | |
| protein localization to organelle | GO:0033365 | 337 | 0.133 | |
| response to chemical | GO:0042221 | 390 | 0.128 | |
| cellular developmental process | GO:0048869 | 191 | 0.127 | Fly |
| multi organism reproductive process | GO:0044703 | 216 | 0.126 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.124 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 81 | 0.123 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.118 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.117 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.108 | Fly |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.101 | |
| signaling | GO:0023052 | 208 | 0.101 | Fly |
| actin cytoskeleton organization | GO:0030036 | 100 | 0.101 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.100 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.100 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.097 | |
| single organism catabolic process | GO:0044712 | 619 | 0.094 | |
| sporulation | GO:0043934 | 132 | 0.092 | |
| signal transduction | GO:0007165 | 208 | 0.090 | Fly |
| growth | GO:0040007 | 157 | 0.090 | Fly |
| maintenance of protein location in cell | GO:0032507 | 50 | 0.087 | |
| protein transport | GO:0015031 | 345 | 0.086 | |
| protein localization to membrane | GO:0072657 | 102 | 0.085 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.085 | |
| maintenance of location | GO:0051235 | 66 | 0.083 | |
| establishment of protein localization | GO:0045184 | 367 | 0.083 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.083 | |
| positive regulation of transport | GO:0051050 | 32 | 0.082 | |
| endocytosis | GO:0006897 | 90 | 0.079 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.078 | Fly |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.076 | |
| sexual reproduction | GO:0019953 | 216 | 0.076 | |
| fungal type cell wall organization | GO:0031505 | 145 | 0.074 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.073 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 42 | 0.069 | |
| actin filament based process | GO:0030029 | 104 | 0.069 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.068 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.064 | Fly |
| regulation of cellular component organization | GO:0051128 | 334 | 0.062 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.062 | |
| ascospore formation | GO:0030437 | 107 | 0.061 | |
| cell differentiation | GO:0030154 | 161 | 0.061 | Fly |
| regulation of dna templated transcription elongation | GO:0032784 | 44 | 0.059 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.057 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.057 | |
| establishment or maintenance of cell polarity | GO:0007163 | 96 | 0.056 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.055 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.054 | |
| cellular component movement | GO:0006928 | 20 | 0.054 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.053 | |
| regulation of molecular function | GO:0065009 | 320 | 0.053 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.052 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.052 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.050 | Fly |
| single organism reproductive process | GO:0044702 | 159 | 0.050 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.049 | |
| positive regulation of secretion by cell | GO:1903532 | 2 | 0.043 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.043 | |
| regulation of cell communication | GO:0010646 | 124 | 0.041 | Fly |
| membrane fusion | GO:0061025 | 73 | 0.040 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.040 | |
| cellular component morphogenesis | GO:0032989 | 97 | 0.040 | Fly |
| regulation of signaling | GO:0023051 | 119 | 0.039 | Fly |
| sporulation resulting in formation of a cellular spore | GO:0030435 | 129 | 0.039 | |
| regulation of vesicle mediated transport | GO:0060627 | 39 | 0.038 | |
| cvt pathway | GO:0032258 | 37 | 0.038 | |
| cell communication | GO:0007154 | 345 | 0.037 | Fly |
| regulation of cell division | GO:0051302 | 113 | 0.037 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.037 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.037 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 40 | 0.036 | |
| cation homeostasis | GO:0055080 | 105 | 0.035 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.035 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 136 | 0.035 | |
| reproductive process | GO:0022414 | 248 | 0.035 | |
| single organism membrane fusion | GO:0044801 | 71 | 0.034 | |
| cell division | GO:0051301 | 205 | 0.032 | |
| ion transport | GO:0006811 | 274 | 0.031 | |
| organelle fission | GO:0048285 | 272 | 0.031 | |
| organelle assembly | GO:0070925 | 118 | 0.030 | |
| maintenance of protein location | GO:0045185 | 53 | 0.030 | |
| spore wall assembly | GO:0042244 | 52 | 0.030 | |
| early endosome to late endosome transport | GO:0045022 | 1 | 0.030 | |
| vacuole organization | GO:0007033 | 75 | 0.029 | |
| protein complex assembly | GO:0006461 | 302 | 0.029 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 38 | 0.028 | |
| homeostatic process | GO:0042592 | 227 | 0.028 | |
| filamentous growth of a population of unicellular organisms | GO:0044182 | 109 | 0.028 | |
| filamentous growth | GO:0030447 | 124 | 0.028 | |
| chromosome segregation | GO:0007059 | 159 | 0.027 | |
| intracellular protein transport | GO:0006886 | 319 | 0.027 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.027 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.026 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.025 | |
| fungal type cell wall organization or biogenesis | GO:0071852 | 169 | 0.025 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.025 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.024 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.024 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.024 | |
| protein targeting | GO:0006605 | 272 | 0.024 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.024 | |
| multi organism cellular process | GO:0044764 | 120 | 0.024 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.022 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.022 | |
| negative regulation of cell cycle | GO:0045786 | 91 | 0.022 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.021 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.021 | |
| mrna processing | GO:0006397 | 185 | 0.021 | |
| negative regulation of cell cycle process | GO:0010948 | 86 | 0.021 | |
| exocytosis | GO:0006887 | 42 | 0.020 | |
| regulation of anatomical structure size | GO:0090066 | 50 | 0.020 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.020 | Fly |
| cellular protein catabolic process | GO:0044257 | 213 | 0.020 | Fly |
| ubiquitin dependent protein catabolic process via the multivesicular body sorting pathway | GO:0043162 | 12 | 0.020 | Fly |
| mitotic nuclear division | GO:0007067 | 131 | 0.020 | |
| endomembrane system organization | GO:0010256 | 74 | 0.019 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.019 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.019 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.019 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.018 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.018 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.018 | |
| positive regulation of secretion | GO:0051047 | 2 | 0.018 | |
| response to organic substance | GO:0010033 | 182 | 0.017 | |
| regulation of growth | GO:0040008 | 50 | 0.017 | Fly |
| regulation of transport | GO:0051049 | 85 | 0.017 | |
| cell development | GO:0048468 | 107 | 0.017 | Fly |
| cell cycle g2 m phase transition | GO:0044839 | 39 | 0.017 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.017 | |
| cell cycle phase transition | GO:0044770 | 144 | 0.017 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.017 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.016 | |
| regulation of cellular component size | GO:0032535 | 50 | 0.016 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.016 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.016 | |
| secretion | GO:0046903 | 50 | 0.016 | |
| dna repair | GO:0006281 | 236 | 0.016 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.015 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.015 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.015 | |
| regulation of protein complex assembly | GO:0043254 | 77 | 0.015 | |
| cell surface receptor signaling pathway | GO:0007166 | 38 | 0.015 | Fly |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.015 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 181 | 0.015 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.014 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.014 | |
| ion homeostasis | GO:0050801 | 118 | 0.014 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.014 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.013 | |
| double strand break repair | GO:0006302 | 105 | 0.013 | |
| anion transport | GO:0006820 | 145 | 0.013 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.013 | |
| lipid transport | GO:0006869 | 58 | 0.013 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.013 | |
| response to osmotic stress | GO:0006970 | 83 | 0.013 | |
| ascospore wall biogenesis | GO:0070591 | 52 | 0.013 | |
| cellular homeostasis | GO:0019725 | 138 | 0.013 | |
| regulation of dna repair | GO:0006282 | 14 | 0.012 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.012 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.012 | |
| sterol transport | GO:0015918 | 24 | 0.012 | |
| establishment of protein localization to membrane | GO:0090150 | 99 | 0.012 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.012 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.012 | |
| cellular response to nutrient | GO:0031670 | 50 | 0.012 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.012 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.012 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.011 | |
| chromatin organization | GO:0006325 | 242 | 0.011 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.011 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.011 | |
| ph reduction | GO:0045851 | 16 | 0.011 | |
| regulation of cellular localization | GO:0060341 | 50 | 0.011 | |
| carbon catabolite regulation of transcription | GO:0045990 | 39 | 0.011 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.010 | |
| cell wall organization | GO:0071555 | 146 | 0.010 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.010 | |
| invasive growth in response to glucose limitation | GO:0001403 | 61 | 0.010 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.010 | |
| biological adhesion | GO:0022610 | 14 | 0.010 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.010 | |
