| transmembrane transport | GO:0055085 | 349 | 0.644 | |
| ion transmembrane transport | GO:0034220 | 200 | 0.506 | |
| anion transport | GO:0006820 | 145 | 0.299 | |
| ion transport | GO:0006811 | 274 | 0.261 | |
| organic anion transport | GO:0015711 | 114 | 0.256 | |
| response to chemical | GO:0042221 | 390 | 0.136 | |
| anion transmembrane transport | GO:0098656 | 79 | 0.123 | |
| vacuolar transport | GO:0007034 | 145 | 0.116 | |
| cation transport | GO:0006812 | 166 | 0.107 | |
| regulation of biological quality | GO:0065008 | 391 | 0.102 | |
| homeostatic process | GO:0042592 | 227 | 0.097 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.095 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.091 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.090 | |
| establishment of protein localization | GO:0045184 | 367 | 0.076 | |
| protein catabolic process | GO:0030163 | 221 | 0.074 | |
| response to organic substance | GO:0010033 | 182 | 0.069 | |
| lipid metabolic process | GO:0006629 | 269 | 0.063 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.063 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.058 | |
| organophosphate ester transport | GO:0015748 | 45 | 0.058 | |
| intracellular protein transport | GO:0006886 | 319 | 0.057 | |
| single organism catabolic process | GO:0044712 | 619 | 0.055 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.051 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.051 | |
| single organism membrane organization | GO:0044802 | 275 | 0.049 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.049 | |
| inorganic cation transmembrane transport | GO:0098662 | 98 | 0.049 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.048 | |
| carboxylic acid transport | GO:0046942 | 74 | 0.048 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.047 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.046 | |
| response to external stimulus | GO:0009605 | 158 | 0.046 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.046 | |
| single organism developmental process | GO:0044767 | 258 | 0.045 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.041 | |
| glycerophospholipid biosynthetic process | GO:0046474 | 68 | 0.040 | |
| amino acid transport | GO:0006865 | 45 | 0.039 | |
| glucose transport | GO:0015758 | 23 | 0.037 | |
| organic acid transport | GO:0015849 | 77 | 0.037 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.035 | |
| cell communication | GO:0007154 | 345 | 0.034 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.034 | |
| protein transport | GO:0015031 | 345 | 0.033 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.033 | |
| organophosphate biosynthetic process | GO:0090407 | 182 | 0.032 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.031 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.030 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 267 | 0.029 | |
| response to starvation | GO:0042594 | 96 | 0.029 | |
| inorganic ion transmembrane transport | GO:0098660 | 109 | 0.029 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 265 | 0.029 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.028 | |
| detection of chemical stimulus | GO:0009593 | 3 | 0.027 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.027 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.026 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.025 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.025 | |
| cellular amide metabolic process | GO:0043603 | 59 | 0.025 | |
| glycerophospholipid metabolic process | GO:0006650 | 98 | 0.025 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.024 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.024 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.024 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.024 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.024 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.024 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.023 | |
| membrane organization | GO:0061024 | 276 | 0.022 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.022 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.022 | |
| peptide metabolic process | GO:0006518 | 28 | 0.022 | |
| proteolysis | GO:0006508 | 268 | 0.021 | |
| glycerolipid metabolic process | GO:0046486 | 108 | 0.021 | |
| endosomal transport | GO:0016197 | 86 | 0.021 | |
| detection of stimulus | GO:0051606 | 4 | 0.021 | |
| generation of precursor metabolites and energy | GO:0006091 | 147 | 0.021 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.021 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.021 | |
| cellular homeostasis | GO:0019725 | 138 | 0.020 | |
| cation transmembrane transport | GO:0098655 | 135 | 0.020 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.020 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.020 | |
| cellular divalent inorganic cation homeostasis | GO:0072503 | 21 | 0.019 | |
| glycerolipid biosynthetic process | GO:0045017 | 71 | 0.019 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.019 | |
| developmental process | GO:0032502 | 261 | 0.018 | |
| multi organism process | GO:0051704 | 233 | 0.018 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.018 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.018 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.018 | |
| phospholipid biosynthetic process | GO:0008654 | 89 | 0.018 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.018 | |
| cation homeostasis | GO:0055080 | 105 | 0.017 | |
| chromatin modification | GO:0016568 | 200 | 0.017 | |
| amine metabolic process | GO:0009308 | 51 | 0.017 | |
| single organism signaling | GO:0044700 | 208 | 0.017 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.017 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.016 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.016 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.016 | |
| detection of hexose stimulus | GO:0009732 | 3 | 0.016 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.015 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.015 | |
| detection of glucose | GO:0051594 | 3 | 0.015 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.015 | |
| ethanolamine containing compound metabolic process | GO:0042439 | 21 | 0.015 | |
| cell differentiation | GO:0030154 | 161 | 0.015 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.015 | |
| lipid transport | GO:0006869 | 58 | 0.014 | |
| endomembrane system organization | GO:0010256 | 74 | 0.014 | |
| divalent inorganic cation homeostasis | GO:0072507 | 21 | 0.014 | |
| response to nutrient levels | GO:0031667 | 150 | 0.013 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.013 | |
| ncrna processing | GO:0034470 | 330 | 0.013 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.013 | |
| response to oxidative stress | GO:0006979 | 99 | 0.013 | |
| phospholipid transport | GO:0015914 | 23 | 0.013 | |
| response to inorganic substance | GO:0010035 | 47 | 0.013 | |
| single organism cellular localization | GO:1902580 | 375 | 0.013 | |
| protein complex assembly | GO:0006461 | 302 | 0.013 | |
| growth | GO:0040007 | 157 | 0.013 | |
| positive regulation of programmed cell death | GO:0043068 | 3 | 0.012 | |
| cell development | GO:0048468 | 107 | 0.012 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.012 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.012 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.012 | |
| cellular response to starvation | GO:0009267 | 90 | 0.012 | |
| response to endogenous stimulus | GO:0009719 | 26 | 0.012 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.012 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.012 | |
| positive regulation of apoptotic process | GO:0043065 | 3 | 0.012 | |
| regulation of dna replication | GO:0006275 | 51 | 0.012 | |
| proteasomal protein catabolic process | GO:0010498 | 141 | 0.012 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 262 | 0.012 | |
| negative regulation of cell cycle | GO:0045786 | 91 | 0.011 | |
| cellular response to oxygen containing compound | GO:1901701 | 43 | 0.011 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.011 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.011 | |
| chemical homeostasis | GO:0048878 | 137 | 0.011 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.011 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.011 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.011 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.011 | |
| establishment of protein localization to membrane | GO:0090150 | 99 | 0.011 | |
| cell division | GO:0051301 | 205 | 0.011 | |
| monosaccharide transport | GO:0015749 | 24 | 0.011 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.011 | |
| membrane lipid metabolic process | GO:0006643 | 67 | 0.011 | |
| organic hydroxy compound metabolic process | GO:1901615 | 125 | 0.011 | |
| regulation of localization | GO:0032879 | 127 | 0.010 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.010 | |
| drug transport | GO:0015893 | 19 | 0.010 | |
| organelle fission | GO:0048285 | 272 | 0.010 | |
| sporulation resulting in formation of a cellular spore | GO:0030435 | 129 | 0.010 | |
| response to drug | GO:0042493 | 41 | 0.010 | |
| dephosphorylation | GO:0016311 | 127 | 0.010 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.010 | |