| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.981 | |
| proteasomal protein catabolic process | GO:0010498 | 141 | 0.979 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.968 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.963 | |
| proteolysis | GO:0006508 | 268 | 0.961 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.958 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.956 | |
| proteasomal ubiquitin independent protein catabolic process | GO:0010499 | 14 | 0.954 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.922 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.905 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.872 | |
| protein catabolic process | GO:0030163 | 221 | 0.864 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.843 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 30 | 0.445 | |
| protein ubiquitination | GO:0016567 | 118 | 0.242 | |
| metaphase anaphase transition of mitotic cell cycle | GO:0007091 | 28 | 0.203 | |
| dna repair | GO:0006281 | 236 | 0.196 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.180 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.161 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.145 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.108 | |
| er associated ubiquitin dependent protein catabolic process | GO:0030433 | 46 | 0.101 | |
| anaphase promoting complex dependent proteasomal ubiquitin dependent protein catabolic process | GO:0031145 | 35 | 0.100 | |
| proteasome assembly | GO:0043248 | 31 | 0.076 | |
| non recombinational repair | GO:0000726 | 33 | 0.074 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 36 | 0.073 | |
| double strand break repair | GO:0006302 | 105 | 0.071 | |
| nuclear transport | GO:0051169 | 165 | 0.070 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.070 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.062 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.062 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.056 | Fly |
| organelle assembly | GO:0070925 | 118 | 0.055 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.055 | |
| nuclear division | GO:0000280 | 263 | 0.049 | |
| regulation of biological quality | GO:0065008 | 391 | 0.049 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.049 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.048 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.048 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.047 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.046 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.042 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.042 | Fly |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.042 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.041 | |
| protein transport | GO:0015031 | 345 | 0.040 | |
| cellular homeostasis | GO:0019725 | 138 | 0.036 | |
| homeostatic process | GO:0042592 | 227 | 0.035 | |
| establishment of protein localization | GO:0045184 | 367 | 0.033 | |
| response to external stimulus | GO:0009605 | 158 | 0.032 | |
| single organism catabolic process | GO:0044712 | 619 | 0.032 | |
| protein complex assembly | GO:0006461 | 302 | 0.032 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.032 | |
| response to chemical | GO:0042221 | 390 | 0.030 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.030 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.030 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.030 | |
| postreplication repair | GO:0006301 | 24 | 0.029 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.029 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.029 | |
| mitotic cell cycle phase transition | GO:0044772 | 141 | 0.028 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.028 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.027 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.026 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.026 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.025 | |
| multi organism process | GO:0051704 | 233 | 0.024 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 194 | 0.024 | |
| anatomical structure development | GO:0048856 | 160 | 0.024 | Worm Fly |
| regulation of cellular protein catabolic process | GO:1903362 | 36 | 0.023 | |
| double strand break repair via nonhomologous end joining | GO:0006303 | 27 | 0.023 | |
| protein polyubiquitination | GO:0000209 | 20 | 0.021 | |
| peroxisome organization | GO:0007031 | 68 | 0.021 | |
| regulation of chromosome organization | GO:0033044 | 66 | 0.021 | |
| protein folding | GO:0006457 | 94 | 0.020 | |
| regulation of nuclear division | GO:0051783 | 103 | 0.020 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.020 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.020 | |
| regulation of proteolysis | GO:0030162 | 44 | 0.020 | |
| nucleotide excision repair | GO:0006289 | 50 | 0.019 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.019 | |
| protein localization to organelle | GO:0033365 | 337 | 0.019 | |
| glucan metabolic process | GO:0044042 | 44 | 0.019 | |
| positive regulation of dna templated transcription initiation | GO:2000144 | 13 | 0.018 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.018 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.018 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.018 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 40 | 0.017 | |
| recombinational repair | GO:0000725 | 64 | 0.017 | |
| mitotic nuclear division | GO:0007067 | 131 | 0.017 | |
| regulation of translation | GO:0006417 | 89 | 0.017 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.017 | |
| telomere organization | GO:0032200 | 75 | 0.017 | |
| single organism membrane organization | GO:0044802 | 275 | 0.017 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.016 | |
| microtubule cytoskeleton organization | GO:0000226 | 109 | 0.016 | Fly |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.016 | |
| mitotic cell cycle checkpoint | GO:0007093 | 56 | 0.016 | |
| cellular carbohydrate metabolic process | GO:0044262 | 135 | 0.016 | |
| protein dna complex assembly | GO:0065004 | 105 | 0.016 | |
| transcription initiation from rna polymerase ii promoter | GO:0006367 | 55 | 0.016 | |
| regulation of dna templated transcription elongation | GO:0032784 | 44 | 0.016 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.016 | |
| negative regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032435 | 24 | 0.016 | |
| regulation of cell division | GO:0051302 | 113 | 0.016 | |
| chemical homeostasis | GO:0048878 | 137 | 0.016 | |
| generation of precursor metabolites and energy | GO:0006091 | 147 | 0.015 | |
| regulation of protein catabolic process | GO:0042176 | 40 | 0.015 | |
| single organism developmental process | GO:0044767 | 258 | 0.015 | Human Worm Fly |
| gene silencing | GO:0016458 | 151 | 0.015 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.015 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.015 | |
| positive regulation of hydrolase activity | GO:0051345 | 112 | 0.015 | |
| regulation of proteasomal protein catabolic process | GO:0061136 | 34 | 0.015 | |
| organelle fission | GO:0048285 | 272 | 0.014 | |
| dna templated transcription initiation | GO:0006352 | 71 | 0.014 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.014 | |
| sexual sporulation | GO:0034293 | 113 | 0.014 | |
| regulation of mitotic metaphase anaphase transition | GO:0030071 | 27 | 0.014 | |
| negative regulation of mitotic metaphase anaphase transition | GO:0045841 | 23 | 0.014 | |
| gene silencing by rna | GO:0031047 | 3 | 0.014 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.014 | |
| regulation of transcription initiation from rna polymerase ii promoter | GO:0060260 | 19 | 0.014 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 42 | 0.014 | |
| chromosome separation | GO:0051304 | 33 | 0.014 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.013 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.013 | |
| regulation of dna templated transcription initiation | GO:2000142 | 19 | 0.013 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.013 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.013 | |
| programmed cell death | GO:0012501 | 30 | 0.013 | Worm |
| rna catabolic process | GO:0006401 | 118 | 0.013 | |
| regulation of cell cycle phase transition | GO:1901987 | 70 | 0.013 | |
| regulation of molecular function | GO:0065009 | 320 | 0.013 | |
| regulation of dna repair | GO:0006282 | 14 | 0.013 | |
| protein maturation | GO:0051604 | 76 | 0.013 | |
| single organism cellular localization | GO:1902580 | 375 | 0.012 | |
| sexual sporulation resulting in formation of a cellular spore | GO:0043935 | 113 | 0.012 | |
| response to organic substance | GO:0010033 | 182 | 0.012 | |
| ascospore formation | GO:0030437 | 107 | 0.012 | |
| intracellular protein transport | GO:0006886 | 319 | 0.012 | |
| regulation of cellular response to stress | GO:0080135 | 50 | 0.012 | |
| mitotic spindle assembly checkpoint | GO:0007094 | 23 | 0.012 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.012 | |
| anion transport | GO:0006820 | 145 | 0.012 | |
| endocytosis | GO:0006897 | 90 | 0.012 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 89 | 0.011 | |
| dna templated transcriptional preinitiation complex assembly | GO:0070897 | 51 | 0.011 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.011 | |
| regulation of localization | GO:0032879 | 127 | 0.011 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.011 | |
| cell cycle g1 s phase transition | GO:0044843 | 64 | 0.011 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.011 | |
| metal ion homeostasis | GO:0055065 | 79 | 0.011 | |
| cellular component disassembly | GO:0022411 | 86 | 0.011 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.010 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.010 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 38 | 0.010 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.010 | |
| multi organism cellular process | GO:0044764 | 120 | 0.010 | |
| cell division | GO:0051301 | 205 | 0.010 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.010 | |
| protein ubiquitination involved in ubiquitin dependent protein catabolic process | GO:0042787 | 26 | 0.010 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.010 | |
