| transmembrane transport | GO:0055085 | 349 | 0.642 | |
| regulation of biological quality | GO:0065008 | 391 | 0.307 | |
| metal ion homeostasis | GO:0055065 | 79 | 0.204 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.203 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.184 | |
| chemical homeostasis | GO:0048878 | 137 | 0.167 | |
| cell communication | GO:0007154 | 345 | 0.165 | |
| establishment of protein localization | GO:0045184 | 367 | 0.145 | |
| protein targeting | GO:0006605 | 272 | 0.139 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.139 | |
| cation homeostasis | GO:0055080 | 105 | 0.134 | |
| intracellular protein transport | GO:0006886 | 319 | 0.123 | |
| cellular metal ion homeostasis | GO:0006875 | 78 | 0.109 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.106 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.106 | |
| protein localization to organelle | GO:0033365 | 337 | 0.100 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.099 | |
| response to organic substance | GO:0010033 | 182 | 0.092 | |
| organic anion transport | GO:0015711 | 114 | 0.090 | |
| phospholipid biosynthetic process | GO:0008654 | 89 | 0.088 | |
| cellular homeostasis | GO:0019725 | 138 | 0.088 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 267 | 0.081 | |
| response to external stimulus | GO:0009605 | 158 | 0.081 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.078 | |
| ion homeostasis | GO:0050801 | 118 | 0.078 | |
| homeostatic process | GO:0042592 | 227 | 0.074 | |
| ion transmembrane transport | GO:0034220 | 200 | 0.071 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.071 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.068 | |
| anion transport | GO:0006820 | 145 | 0.066 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.064 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.064 | |
| single organism cellular localization | GO:1902580 | 375 | 0.059 | |
| ion transport | GO:0006811 | 274 | 0.057 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.057 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.055 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.055 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.055 | |
| protein folding | GO:0006457 | 94 | 0.053 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.051 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.050 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.049 | Mouse |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.048 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.048 | |
| monovalent inorganic cation homeostasis | GO:0055067 | 32 | 0.048 | |
| transition metal ion homeostasis | GO:0055076 | 59 | 0.047 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.047 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.047 | |
| single organism signaling | GO:0044700 | 208 | 0.046 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.046 | |
| cellular monovalent inorganic cation homeostasis | GO:0030004 | 27 | 0.046 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.046 | |
| response to chemical | GO:0042221 | 390 | 0.046 | |
| single organism catabolic process | GO:0044712 | 619 | 0.045 | |
| cation transport | GO:0006812 | 166 | 0.045 | |
| protein transport | GO:0015031 | 345 | 0.044 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.042 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.041 | |
| cation transmembrane transport | GO:0098655 | 135 | 0.040 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.039 | |
| organophosphate biosynthetic process | GO:0090407 | 182 | 0.039 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.038 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.038 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.038 | |
| mitochondrion organization | GO:0007005 | 261 | 0.035 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.035 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.034 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.034 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.034 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.033 | |
| organophosphate ester transport | GO:0015748 | 45 | 0.033 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.033 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.032 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.032 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.031 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.031 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.031 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.031 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.031 | |
| generation of precursor metabolites and energy | GO:0006091 | 147 | 0.031 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.031 | Rat |
| establishment of protein localization to membrane | GO:0090150 | 99 | 0.030 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.030 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.029 | |
| single organism developmental process | GO:0044767 | 258 | 0.028 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.028 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.028 | |
| translation | GO:0006412 | 230 | 0.027 | |
| signal transduction | GO:0007165 | 208 | 0.027 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.027 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.027 | Mouse |
| aging | GO:0007568 | 71 | 0.027 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.026 | |
| carboxylic acid transport | GO:0046942 | 74 | 0.026 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.026 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.026 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.026 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.025 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.025 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.025 | |
| er to golgi vesicle mediated transport | GO:0006888 | 86 | 0.025 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.025 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.024 | |
| response to oxidative stress | GO:0006979 | 99 | 0.024 | |
| organelle localization | GO:0051640 | 128 | 0.024 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.024 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.024 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.024 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.023 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.023 | |
| membrane organization | GO:0061024 | 276 | 0.023 | Mouse |
| glycerophospholipid metabolic process | GO:0006650 | 98 | 0.023 | |
| alcohol biosynthetic process | GO:0046165 | 75 | 0.022 | |
| sulfur compound metabolic process | GO:0006790 | 95 | 0.022 | |
| programmed cell death | GO:0012501 | 30 | 0.022 | |
| developmental process | GO:0032502 | 261 | 0.022 | |
| lipid metabolic process | GO:0006629 | 269 | 0.022 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.022 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.022 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 181 | 0.022 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.021 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.021 | |
| regulation of metal ion transport | GO:0010959 | 2 | 0.021 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.020 | |
| single organism membrane organization | GO:0044802 | 275 | 0.020 | |
| cell death | GO:0008219 | 30 | 0.020 | |
| regulation of molecular function | GO:0065009 | 320 | 0.020 | |
| cellular transition metal ion homeostasis | GO:0046916 | 59 | 0.020 | |
| protein acylation | GO:0043543 | 66 | 0.020 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 262 | 0.019 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.019 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.019 | |
| response to nutrient levels | GO:0031667 | 150 | 0.019 | |
| metal ion transport | GO:0030001 | 75 | 0.019 | |
| signaling | GO:0023052 | 208 | 0.019 | |
| protein targeting to membrane | GO:0006612 | 52 | 0.019 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.019 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.019 | |
| peroxisome organization | GO:0007031 | 68 | 0.018 | |
| atp metabolic process | GO:0046034 | 251 | 0.018 | |
| positive regulation of hydrolase activity | GO:0051345 | 112 | 0.018 | |
| signal transduction involved in conjugation with cellular fusion | GO:0032005 | 31 | 0.018 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.018 | |
| chromatin remodeling | GO:0006338 | 80 | 0.018 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 265 | 0.018 | |
| lipid localization | GO:0010876 | 60 | 0.018 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.017 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.017 | |
| inorganic ion transmembrane transport | GO:0098660 | 109 | 0.017 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.017 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.017 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.017 | |
| regulation of signaling | GO:0023051 | 119 | 0.017 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.017 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.017 | |
| protein complex assembly | GO:0006461 | 302 | 0.017 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.017 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.016 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.016 | |
| detection of stimulus | GO:0051606 | 4 | 0.016 | |
| establishment of protein localization to endoplasmic reticulum | GO:0072599 | 40 | 0.016 | |
| endosomal transport | GO:0016197 | 86 | 0.016 | |
| response to oxygen containing compound | GO:1901700 | 61 | 0.016 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 262 | 0.016 | |
| inorganic cation transmembrane transport | GO:0098662 | 98 | 0.016 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.016 | |
| regulation of intracellular signal transduction | GO:1902531 | 78 | 0.016 | |
| mitochondrial transport | GO:0006839 | 76 | 0.016 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.016 | |
| organelle assembly | GO:0070925 | 118 | 0.015 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.015 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.015 | |
| guanosine containing compound metabolic process | GO:1901068 | 111 | 0.015 | |
| response to uv | GO:0009411 | 4 | 0.015 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.015 | |
| carbohydrate derivative transport | GO:1901264 | 27 | 0.015 | |
| chromatin modification | GO:0016568 | 200 | 0.015 | |
| amine metabolic process | GO:0009308 | 51 | 0.015 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 109 | 0.015 | |
| alcohol metabolic process | GO:0006066 | 112 | 0.015 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.015 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.014 | |
| organic acid transport | GO:0015849 | 77 | 0.014 | |
| regulation of transport | GO:0051049 | 85 | 0.014 | |
| sterol metabolic process | GO:0016125 | 47 | 0.014 | |
| conjugation | GO:0000746 | 107 | 0.014 | |
| response to pheromone | GO:0019236 | 92 | 0.014 | |
| retrograde vesicle mediated transport golgi to er | GO:0006890 | 28 | 0.014 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 224 | 0.014 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.014 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.014 | |
| positive regulation of response to stimulus | GO:0048584 | 37 | 0.014 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.014 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.014 | |
| conjugation with cellular fusion | GO:0000747 | 106 | 0.013 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 224 | 0.013 | |
| steroid metabolic process | GO:0008202 | 47 | 0.013 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.013 | |
| dna repair | GO:0006281 | 236 | 0.013 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.013 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.013 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.013 | |
| pigment biosynthetic process | GO:0046148 | 22 | 0.013 | |
| g protein coupled receptor signaling pathway | GO:0007186 | 37 | 0.013 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.013 | |
| positive regulation of programmed cell death | GO:0043068 | 3 | 0.013 | |
| lipoprotein metabolic process | GO:0042157 | 40 | 0.013 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.013 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.013 | |
| response to endoplasmic reticulum stress | GO:0034976 | 23 | 0.012 | |
| carboxylic acid biosynthetic process | GO:0046394 | 152 | 0.012 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.012 | |
| protein import | GO:0017038 | 122 | 0.012 | |
| cellular respiration | GO:0045333 | 82 | 0.012 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.012 | |
| membrane lipid metabolic process | GO:0006643 | 67 | 0.012 | |
| rrna metabolic process | GO:0016072 | 244 | 0.012 | |
| dna templated transcription initiation | GO:0006352 | 71 | 0.012 | |
| protein methylation | GO:0006479 | 48 | 0.012 | |
| chromatin organization | GO:0006325 | 242 | 0.012 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.012 | |
| cellular response to abiotic stimulus | GO:0071214 | 62 | 0.012 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.012 | |
| lipid transport | GO:0006869 | 58 | 0.012 | |
| regulation of nucleotide catabolic process | GO:0030811 | 106 | 0.012 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.012 | |
| protein localization to endoplasmic reticulum | GO:0070972 | 47 | 0.012 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 125 | 0.011 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.011 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.011 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.011 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.011 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.011 | |
| response to osmotic stress | GO:0006970 | 83 | 0.011 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.011 | |
| gene silencing | GO:0016458 | 151 | 0.011 | |
| pheromone dependent signal transduction involved in conjugation with cellular fusion | GO:0000750 | 31 | 0.011 | |
| establishment of organelle localization | GO:0051656 | 96 | 0.011 | |
| golgi vesicle transport | GO:0048193 | 188 | 0.011 | |
| ascospore formation | GO:0030437 | 107 | 0.011 | |
| cellular iron ion homeostasis | GO:0006879 | 34 | 0.011 | |
| regulation of localization | GO:0032879 | 127 | 0.011 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.011 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.011 | |
| organic acid catabolic process | GO:0016054 | 71 | 0.011 | |
| response to heat | GO:0009408 | 69 | 0.011 | |
| protein localization to membrane | GO:0072657 | 102 | 0.011 | |
| membrane lipid biosynthetic process | GO:0046467 | 54 | 0.011 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.011 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.011 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.011 | |
| gtp metabolic process | GO:0046039 | 107 | 0.010 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.010 | |
| regulation of translation | GO:0006417 | 89 | 0.010 | |
| regulation of ph | GO:0006885 | 21 | 0.010 | |
| protein localization to mitochondrion | GO:0070585 | 63 | 0.010 | |
| organic hydroxy compound biosynthetic process | GO:1901617 | 81 | 0.010 | |
| death | GO:0016265 | 30 | 0.010 | |
| vacuole fusion | GO:0097576 | 40 | 0.010 | |
