| rna modification | GO:0009451 | 99 | 0.948 | |
| macromolecule methylation | GO:0043414 | 85 | 0.805 | |
| trna modification | GO:0006400 | 75 | 0.722 | |
| methylation | GO:0032259 | 101 | 0.632 | |
| trna processing | GO:0008033 | 101 | 0.539 | |
| rna methylation | GO:0001510 | 39 | 0.534 | |
| ncrna processing | GO:0034470 | 330 | 0.360 | |
| rrna methylation | GO:0031167 | 13 | 0.169 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.143 | |
| trna methylation | GO:0030488 | 21 | 0.139 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.128 | |
| trna metabolic process | GO:0006399 | 151 | 0.112 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.101 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.100 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.094 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.076 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.076 | |
| rrna processing | GO:0006364 | 227 | 0.071 | |
| ribosomal large subunit assembly | GO:0000027 | 35 | 0.066 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.064 | |
| regulation of biological quality | GO:0065008 | 391 | 0.063 | |
| phosphorylation | GO:0016310 | 291 | 0.061 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.061 | |
| cellular response to oxidative stress | GO:0034599 | 94 | 0.059 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.058 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.057 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.057 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.055 | |
| regulation of transferase activity | GO:0051338 | 83 | 0.054 | |
| regulation of translation | GO:0006417 | 89 | 0.050 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.049 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.046 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.045 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.044 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.043 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.041 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.041 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.040 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.040 | |
| mrna metabolic process | GO:0016071 | 269 | 0.040 | |
| response to chemical | GO:0042221 | 390 | 0.035 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.034 | |
| coenzyme metabolic process | GO:0006732 | 104 | 0.034 | |
| single organism catabolic process | GO:0044712 | 619 | 0.034 | |
| developmental process | GO:0032502 | 261 | 0.032 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.032 | |
| lipid metabolic process | GO:0006629 | 269 | 0.032 | |
| organelle assembly | GO:0070925 | 118 | 0.031 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.030 | |
| protein alkylation | GO:0008213 | 48 | 0.030 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.030 | |
| cellular modified amino acid metabolic process | GO:0006575 | 51 | 0.029 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.029 | |
| external encapsulating structure organization | GO:0045229 | 146 | 0.029 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.029 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.029 | |
| single organism developmental process | GO:0044767 | 258 | 0.029 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.028 | |
| protein phosphorylation | GO:0006468 | 197 | 0.028 | |
| single organism reproductive process | GO:0044702 | 159 | 0.028 | |
| regulation of phosphorylation | GO:0042325 | 86 | 0.028 | |
| sexual reproduction | GO:0019953 | 216 | 0.027 | |
| cell communication | GO:0007154 | 345 | 0.027 | |
| regulation of protein modification process | GO:0031399 | 110 | 0.026 | |
| cell division | GO:0051301 | 205 | 0.026 | |
| protein transport | GO:0015031 | 345 | 0.025 | |
| protein catabolic process | GO:0030163 | 221 | 0.025 | |
| protein localization to organelle | GO:0033365 | 337 | 0.025 | |
| regulation of kinase activity | GO:0043549 | 71 | 0.024 | |
| response to external stimulus | GO:0009605 | 158 | 0.024 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.024 | |
| regulation of signaling | GO:0023051 | 119 | 0.024 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.023 | |
| cell budding | GO:0007114 | 48 | 0.023 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.023 | |
| regulation of cell communication | GO:0010646 | 124 | 0.023 | |
| actin filament based process | GO:0030029 | 104 | 0.023 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.023 | |
| cofactor metabolic process | GO:0051186 | 126 | 0.023 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.023 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.023 | |
| homeostatic process | GO:0042592 | 227 | 0.023 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.022 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.022 | |
| mrna processing | GO:0006397 | 185 | 0.022 | |
| reproductive process | GO:0022414 | 248 | 0.021 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.021 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.021 | |
| cellular homeostasis | GO:0019725 | 138 | 0.021 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.021 | |
| rna catabolic process | GO:0006401 | 118 | 0.021 | |
| regulation of molecular function | GO:0065009 | 320 | 0.021 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.020 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.020 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.020 | |
| rrna modification | GO:0000154 | 19 | 0.020 | |
| signaling | GO:0023052 | 208 | 0.020 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.020 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.019 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.019 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.019 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.019 | |
| protein methylation | GO:0006479 | 48 | 0.018 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 147 | 0.018 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.018 | |
| response to nutrient levels | GO:0031667 | 150 | 0.018 | |
| regulation of protein kinase activity | GO:0045859 | 67 | 0.018 | |
| cell differentiation | GO:0030154 | 161 | 0.017 | |
| multi organism process | GO:0051704 | 233 | 0.017 | |
| fungal type cell wall organization or biogenesis | GO:0071852 | 169 | 0.017 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.017 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.017 | |
| histone modification | GO:0016570 | 119 | 0.017 | |
| dna replication | GO:0006260 | 147 | 0.017 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.016 | |
| maturation of lsu rrna | GO:0000470 | 39 | 0.016 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.016 | |
| endocytosis | GO:0006897 | 90 | 0.016 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.016 | |
| mitochondrion organization | GO:0007005 | 261 | 0.016 | |
| cellular amino acid biosynthetic process | GO:0008652 | 118 | 0.016 | |
| protein complex assembly | GO:0006461 | 302 | 0.016 | |
| organic anion transport | GO:0015711 | 114 | 0.016 | |
| establishment of protein localization | GO:0045184 | 367 | 0.016 | |
| ribosome assembly | GO:0042255 | 57 | 0.016 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 147 | 0.015 | |
| protein complex disassembly | GO:0043241 | 70 | 0.015 | |
| fungal type cell wall organization | GO:0031505 | 145 | 0.015 | |
| ribosomal small subunit biogenesis | GO:0042274 | 124 | 0.015 | |
| regulation of intracellular signal transduction | GO:1902531 | 78 | 0.015 | |
| establishment of cell polarity | GO:0030010 | 64 | 0.015 | |
| rrna metabolic process | GO:0016072 | 244 | 0.015 | |
| maturation of ssu rrna | GO:0030490 | 105 | 0.015 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.015 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.015 | |
| actin cytoskeleton organization | GO:0030036 | 100 | 0.015 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.014 | |
| response to oxidative stress | GO:0006979 | 99 | 0.014 | |
| proteolysis | GO:0006508 | 268 | 0.014 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.014 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.014 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.014 | |
| asexual reproduction | GO:0019954 | 48 | 0.014 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.014 | |
| golgi vesicle transport | GO:0048193 | 188 | 0.014 | |
| maturation of 5 8s rrna | GO:0000460 | 80 | 0.014 | |
| cell wall organization or biogenesis | GO:0071554 | 190 | 0.013 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.013 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.013 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.013 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.013 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.013 | |
| cell wall organization | GO:0071555 | 146 | 0.013 | |
| protein processing | GO:0016485 | 64 | 0.013 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.013 | |
| negative regulation of phosphorylation | GO:0042326 | 28 | 0.013 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.013 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.013 | |
| coenzyme biosynthetic process | GO:0009108 | 66 | 0.013 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 49 | 0.012 | |
| positive regulation of cell communication | GO:0010647 | 28 | 0.012 | |
| cell growth | GO:0016049 | 89 | 0.012 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.012 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 109 | 0.012 | |
| ion homeostasis | GO:0050801 | 118 | 0.012 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.012 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 194 | 0.012 | |
| positive regulation of response to stimulus | GO:0048584 | 37 | 0.012 | |
| filamentous growth of a population of unicellular organisms | GO:0044182 | 109 | 0.012 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.012 | |
| negative regulation of cell cycle | GO:0045786 | 91 | 0.012 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.012 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.012 | |
| cell aging | GO:0007569 | 70 | 0.011 | |
| invasive growth in response to glucose limitation | GO:0001403 | 61 | 0.011 | |
| regulation of cellular response to stress | GO:0080135 | 50 | 0.011 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.011 | |
| response to starvation | GO:0042594 | 96 | 0.011 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.011 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.011 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.011 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.010 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.010 | |
| organelle localization | GO:0051640 | 128 | 0.010 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.010 | |
| anatomical structure development | GO:0048856 | 160 | 0.010 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.010 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 49 | 0.010 | |
| translation | GO:0006412 | 230 | 0.010 | |
| signal transduction | GO:0007165 | 208 | 0.010 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.010 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.010 | |
