| rna polymerase ii transcriptional preinitiation complex assembly | GO:0051123 | 40 | 0.967 | |
| transcription initiation from rna polymerase ii promoter | GO:0006367 | 55 | 0.964 | |
| dna templated transcription initiation | GO:0006352 | 71 | 0.883 | |
| dna templated transcriptional preinitiation complex assembly | GO:0070897 | 51 | 0.872 | |
| protein dna complex assembly | GO:0065004 | 105 | 0.707 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.580 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.430 | |
| internal protein amino acid acetylation | GO:0006475 | 52 | 0.372 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.370 | |
| protein acylation | GO:0043543 | 66 | 0.313 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.308 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.253 | |
| peptidyl lysine acetylation | GO:0018394 | 52 | 0.242 | |
| protein acetylation | GO:0006473 | 59 | 0.233 | |
| internal peptidyl lysine acetylation | GO:0018393 | 52 | 0.231 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.140 | |
| histone acetylation | GO:0016573 | 51 | 0.140 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.133 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.127 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.126 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.124 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.122 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.111 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.104 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.103 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.088 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.081 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.080 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.076 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.075 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.067 | |
| phosphorylation | GO:0016310 | 291 | 0.065 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.065 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.063 | |
| chromatin organization | GO:0006325 | 242 | 0.058 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.055 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.055 | |
| chromatin modification | GO:0016568 | 200 | 0.054 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.050 | |
| histone modification | GO:0016570 | 119 | 0.049 | |
| regulation of biological quality | GO:0065008 | 391 | 0.047 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.047 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.044 | |
| cell cycle phase transition | GO:0044770 | 144 | 0.042 | |
| atp metabolic process | GO:0046034 | 251 | 0.039 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.037 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.037 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.037 | |
| single organism catabolic process | GO:0044712 | 619 | 0.036 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.036 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.034 | |
| protein phosphorylation | GO:0006468 | 197 | 0.030 | |
| regulation of molecular function | GO:0065009 | 320 | 0.028 | |
| regulation of mitotic cell cycle | GO:0007346 | 107 | 0.027 | |
| mitotic cell cycle phase transition | GO:0044772 | 141 | 0.027 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.026 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.026 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.024 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.023 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.023 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.023 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.022 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 49 | 0.022 | |
| intracellular protein transport | GO:0006886 | 319 | 0.022 | |
| cell growth | GO:0016049 | 89 | 0.021 | |
| regulation of transcription initiation from rna polymerase ii promoter | GO:0060260 | 19 | 0.021 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.020 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.019 | |
| regulation of protein modification process | GO:0031399 | 110 | 0.019 | |
| regulation of histone acetylation | GO:0035065 | 7 | 0.018 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.018 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 262 | 0.018 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.018 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.018 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.017 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.017 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.017 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.017 | |
| mitotic nuclear division | GO:0007067 | 131 | 0.017 | |
| growth | GO:0040007 | 157 | 0.017 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.017 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.017 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 262 | 0.016 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 224 | 0.016 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.016 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 265 | 0.016 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.016 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.016 | |
| negative regulation of chromatin modification | GO:1903309 | 9 | 0.016 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 30 | 0.015 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.015 | |
| regulation of phosphorylation | GO:0042325 | 86 | 0.015 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.015 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 68 | 0.015 | |
| proteolysis | GO:0006508 | 268 | 0.015 | |
| proteasomal protein catabolic process | GO:0010498 | 141 | 0.015 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.015 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.014 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.014 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.014 | |
| atp catabolic process | GO:0006200 | 224 | 0.014 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.014 | |
| alpha amino acid metabolic process | GO:1901605 | 124 | 0.013 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.013 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.013 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.013 | |
| amine metabolic process | GO:0009308 | 51 | 0.013 | |
| negative regulation of cellular catabolic process | GO:0031330 | 43 | 0.013 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 224 | 0.013 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.013 | |
| protein catabolic process | GO:0030163 | 221 | 0.013 | |
| negative regulation of protein modification process | GO:0031400 | 37 | 0.012 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.012 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.012 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 267 | 0.012 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.012 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 59 | 0.012 | |
| regulation of cell cycle phase transition | GO:1901987 | 70 | 0.012 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.012 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.012 | |
| regulation of protein catabolic process | GO:0042176 | 40 | 0.012 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 49 | 0.012 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.012 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.012 | |
| regulation of chromosome organization | GO:0033044 | 66 | 0.011 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.011 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.011 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.011 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.011 | |
| negative regulation of catabolic process | GO:0009895 | 43 | 0.011 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.011 | |
| regulation of protein complex assembly | GO:0043254 | 77 | 0.011 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.011 | |
| vacuolar transport | GO:0007034 | 145 | 0.011 | |
| positive regulation of transcription initiation from rna polymerase ii promoter | GO:0060261 | 13 | 0.011 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.011 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.011 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.011 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.011 | |
| nuclear transport | GO:0051169 | 165 | 0.011 | |
| homeostatic process | GO:0042592 | 227 | 0.010 | |
| protein localization to organelle | GO:0033365 | 337 | 0.010 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.010 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.010 | |
| regulation of protein phosphorylation | GO:0001932 | 75 | 0.010 | |
| cell communication | GO:0007154 | 345 | 0.010 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.010 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 81 | 0.010 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.010 | |
