| vacuolar transport | GO:0007034 | 145 | 0.663 | |
| cation homeostasis | GO:0055080 | 105 | 0.523 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.411 | |
| ion homeostasis | GO:0050801 | 118 | 0.401 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.326 | |
| vacuole fusion non autophagic | GO:0042144 | 40 | 0.316 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.311 | |
| late endosome to vacuole transport | GO:0045324 | 42 | 0.309 | |
| membrane fusion | GO:0061025 | 73 | 0.304 | |
| single organism membrane fusion | GO:0044801 | 71 | 0.295 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.288 | |
| regulation of vesicle mediated transport | GO:0060627 | 39 | 0.248 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.245 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.217 | |
| monovalent inorganic cation homeostasis | GO:0055067 | 32 | 0.213 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.201 | |
| cellular homeostasis | GO:0019725 | 138 | 0.191 | |
| protein localization to organelle | GO:0033365 | 337 | 0.186 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.186 | |
| vacuole organization | GO:0007033 | 75 | 0.186 | |
| oxidation reduction process | GO:0055114 | 353 | 0.185 | |
| homeostatic process | GO:0042592 | 227 | 0.184 | |
| vacuole fusion | GO:0097576 | 40 | 0.179 | |
| protein complex assembly | GO:0006461 | 302 | 0.177 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.162 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.161 | |
| cellular monovalent inorganic cation homeostasis | GO:0030004 | 27 | 0.156 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.148 | |
| lipid metabolic process | GO:0006629 | 269 | 0.144 | |
| small molecule catabolic process | GO:0044282 | 88 | 0.143 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.137 | |
| endocytosis | GO:0006897 | 90 | 0.134 | |
| chemical homeostasis | GO:0048878 | 137 | 0.132 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.129 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.126 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.124 | |
| chromatin organization | GO:0006325 | 242 | 0.116 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.114 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.113 | |
| negative regulation of cell communication | GO:0010648 | 33 | 0.113 | |
| regulation of biological quality | GO:0065008 | 391 | 0.111 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 125 | 0.109 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.108 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.106 | |
| regulation of localization | GO:0032879 | 127 | 0.104 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.102 | |
| protein maturation | GO:0051604 | 76 | 0.102 | |
| histone modification | GO:0016570 | 119 | 0.100 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.099 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.094 | |
| membrane organization | GO:0061024 | 276 | 0.092 | |
| single organism catabolic process | GO:0044712 | 619 | 0.088 | |
| establishment of protein localization | GO:0045184 | 367 | 0.087 | |
| endosomal transport | GO:0016197 | 86 | 0.081 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.081 | |
| organelle fusion | GO:0048284 | 85 | 0.077 | |
| negative regulation of signal transduction | GO:0009968 | 30 | 0.075 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.074 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.074 | |
| single organism membrane organization | GO:0044802 | 275 | 0.064 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.061 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.061 | |
| maintenance of location | GO:0051235 | 66 | 0.057 | |
| potassium ion homeostasis | GO:0055075 | 7 | 0.055 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.052 | |
| protein transport | GO:0015031 | 345 | 0.048 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.047 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.047 | |
| intracellular protein transport | GO:0006886 | 319 | 0.047 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.046 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.046 | |
| proteolysis | GO:0006508 | 268 | 0.046 | |
| multi organism cellular process | GO:0044764 | 120 | 0.045 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.045 | |
| regulation of transport | GO:0051049 | 85 | 0.044 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.043 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.043 | |
| cellular carbohydrate metabolic process | GO:0044262 | 135 | 0.043 | |
| single organism cellular localization | GO:1902580 | 375 | 0.042 | |
| cell wall organization or biogenesis | GO:0071554 | 190 | 0.042 | |
| carbohydrate transport | GO:0008643 | 33 | 0.041 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.041 | |
| regulation of molecular function | GO:0065009 | 320 | 0.040 | |
| organelle inheritance | GO:0048308 | 51 | 0.040 | |
| regulation of protein complex assembly | GO:0043254 | 77 | 0.039 | |
| protein targeting | GO:0006605 | 272 | 0.038 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.038 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.037 | |
| chromatin modification | GO:0016568 | 200 | 0.036 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.036 | |
| regulation of cell communication | GO:0010646 | 124 | 0.035 | |
| fatty acid metabolic process | GO:0006631 | 51 | 0.035 | |
| cellular response to starvation | GO:0009267 | 90 | 0.034 | |
| negative regulation of response to stimulus | GO:0048585 | 40 | 0.034 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.033 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.032 | |
| response to salt stress | GO:0009651 | 34 | 0.032 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.032 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 147 | 0.031 | |
| vesicle fusion | GO:0006906 | 33 | 0.030 | |
| nucleophagy | GO:0044804 | 34 | 0.030 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.029 | |
| regulation of filamentous growth | GO:0010570 | 38 | 0.028 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.027 | |
| regulation of signaling | GO:0023051 | 119 | 0.027 | |
| monocarboxylic acid metabolic process | GO:0032787 | 122 | 0.027 | |
| regulation of ph | GO:0006885 | 21 | 0.027 | |
| post golgi vesicle mediated transport | GO:0006892 | 72 | 0.026 | |
| generation of precursor metabolites and energy | GO:0006091 | 147 | 0.026 | |
| cellular metal ion homeostasis | GO:0006875 | 78 | 0.026 | |
| macroautophagy | GO:0016236 | 55 | 0.024 | |
| organic hydroxy compound metabolic process | GO:1901615 | 125 | 0.024 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.024 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.024 | |
| chromatin silencing | GO:0006342 | 147 | 0.024 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.024 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.024 | |
| piecemeal microautophagy of nucleus | GO:0034727 | 33 | 0.023 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.023 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.022 | |
| single organism developmental process | GO:0044767 | 258 | 0.022 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.022 | |
| regulation of vacuole organization | GO:0044088 | 20 | 0.022 | |
| regulation of growth | GO:0040008 | 50 | 0.022 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.021 | |
| transition metal ion transport | GO:0000041 | 45 | 0.020 | |
| response to starvation | GO:0042594 | 96 | 0.020 | |
| developmental process | GO:0032502 | 261 | 0.020 | |
| sexual reproduction | GO:0019953 | 216 | 0.020 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.020 | |
| receptor metabolic process | GO:0043112 | 8 | 0.020 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.020 | |
| cell wall organization | GO:0071555 | 146 | 0.019 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.019 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.019 | |
| monocarboxylic acid catabolic process | GO:0072329 | 26 | 0.019 | |
| regulation of vesicle fusion | GO:0031338 | 10 | 0.019 | |
| response to external stimulus | GO:0009605 | 158 | 0.018 | |
| multi organism process | GO:0051704 | 233 | 0.018 | |
| regulation of phosphorylation | GO:0042325 | 86 | 0.018 | |
| carbon catabolite activation of transcription | GO:0045991 | 26 | 0.018 | |
| dna templated transcription elongation | GO:0006354 | 91 | 0.018 | |
| cellular respiration | GO:0045333 | 82 | 0.018 | |
| signaling | GO:0023052 | 208 | 0.018 | |
| cellular potassium ion homeostasis | GO:0030007 | 6 | 0.018 | |
| negative regulation of catabolic process | GO:0009895 | 43 | 0.018 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 81 | 0.018 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.017 | |
| vesicle organization | GO:0016050 | 68 | 0.017 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.017 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.017 | |
| glycerolipid metabolic process | GO:0046486 | 108 | 0.017 | |
| autophagy | GO:0006914 | 106 | 0.017 | |
| protein processing | GO:0016485 | 64 | 0.017 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.016 | |
| organelle fission | GO:0048285 | 272 | 0.016 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.016 | |
| ion transport | GO:0006811 | 274 | 0.016 | |
| snare complex assembly | GO:0035493 | 10 | 0.016 | |
| positive regulation of organelle organization | GO:0010638 | 85 | 0.016 | |
| late endosome to vacuole transport via multivesicular body sorting pathway | GO:0032511 | 26 | 0.016 | |
| chromatin silencing at silent mating type cassette | GO:0030466 | 53 | 0.016 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.016 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.016 | |
| regulation of vacuole fusion non autophagic | GO:0032889 | 14 | 0.016 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.015 | |
| glycogen metabolic process | GO:0005977 | 30 | 0.015 | |
| carbon catabolite regulation of transcription | GO:0045990 | 39 | 0.015 | |
| invasive filamentous growth | GO:0036267 | 65 | 0.015 | |
| regulation of cellular ph | GO:0030641 | 17 | 0.015 | |
| regulation of transcription from rna polymerase ii promoter in response to stress | GO:0043618 | 51 | 0.015 | |
| external encapsulating structure organization | GO:0045229 | 146 | 0.015 | |
| peroxisome organization | GO:0007031 | 68 | 0.015 | |
| lipid modification | GO:0030258 | 37 | 0.014 | |
| ph reduction | GO:0045851 | 16 | 0.014 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.014 | |
| response to heat | GO:0009408 | 69 | 0.014 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.014 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.014 | |
| response to chemical | GO:0042221 | 390 | 0.014 | |
| regulation of endocytosis | GO:0030100 | 17 | 0.014 | |
| single organism reproductive process | GO:0044702 | 159 | 0.014 | |
| protein lipidation | GO:0006497 | 40 | 0.014 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.014 | |
| monovalent inorganic cation transport | GO:0015672 | 78 | 0.013 | |
| cell cycle checkpoint | GO:0000075 | 82 | 0.013 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.013 | |
| organelle assembly | GO:0070925 | 118 | 0.013 | |
| carbohydrate biosynthetic process | GO:0016051 | 82 | 0.013 | |
| negative regulation of protein modification process | GO:0031400 | 37 | 0.013 | |
| regulation of protein modification process | GO:0031399 | 110 | 0.013 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.013 | |
| regulation of snare complex assembly | GO:0035542 | 9 | 0.012 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.012 | |
| cellular response to nutrient | GO:0031670 | 50 | 0.012 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.012 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.012 | |
| transmembrane transport | GO:0055085 | 349 | 0.012 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.012 | |
| cell death | GO:0008219 | 30 | 0.012 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 16 | 0.012 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 181 | 0.012 | |
| organelle localization | GO:0051640 | 128 | 0.012 | |
| organic acid catabolic process | GO:0016054 | 71 | 0.012 | |
| fatty acid catabolic process | GO:0009062 | 17 | 0.012 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.012 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.012 | |
| peroxisome degradation | GO:0030242 | 22 | 0.012 | |
| sexual sporulation resulting in formation of a cellular spore | GO:0043935 | 113 | 0.012 | |
| protein localization to golgi apparatus | GO:0034067 | 13 | 0.012 | |
| rna localization | GO:0006403 | 112 | 0.012 | |
| ascospore formation | GO:0030437 | 107 | 0.012 | |
| conjugation | GO:0000746 | 107 | 0.012 | |
| protein catabolic process | GO:0030163 | 221 | 0.012 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 49 | 0.011 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.011 | |
| reproductive process | GO:0022414 | 248 | 0.011 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.011 | |
| fungal type cell wall organization | GO:0031505 | 145 | 0.011 | |
| cellular developmental process | GO:0048869 | 191 | 0.011 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.011 | |
| mitotic cell cycle phase transition | GO:0044772 | 141 | 0.011 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.011 | |
| rrna metabolic process | GO:0016072 | 244 | 0.011 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.011 | |
| response to nutrient levels | GO:0031667 | 150 | 0.011 | |
| golgi to endosome transport | GO:0006895 | 17 | 0.010 | |
| regulation of protein phosphorylation | GO:0001932 | 75 | 0.010 | |
| regulation of carbohydrate metabolic process | GO:0006109 | 43 | 0.010 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.010 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.010 | |
| cell communication | GO:0007154 | 345 | 0.010 | |
| intracellular ph reduction | GO:0051452 | 16 | 0.010 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.010 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.010 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.010 | |
| exocytosis | GO:0006887 | 42 | 0.010 | |
