| mitochondrion degradation | GO:0000422 | 29 | 0.981 | |
| protein targeting | GO:0006605 | 272 | 0.784 | |
| single organism membrane organization | GO:0044802 | 275 | 0.769 | |
| autophagy | GO:0006914 | 106 | 0.766 | |
| single organism membrane invagination | GO:1902534 | 43 | 0.718 | |
| establishment of protein localization | GO:0045184 | 367 | 0.709 | |
| single organism cellular localization | GO:1902580 | 375 | 0.673 | |
| intracellular protein transport | GO:0006886 | 319 | 0.662 | |
| membrane invagination | GO:0010324 | 43 | 0.655 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.614 | |
| protein transport | GO:0015031 | 345 | 0.575 | |
| cvt pathway | GO:0032258 | 37 | 0.564 | |
| vacuolar transport | GO:0007034 | 145 | 0.443 | |
| membrane organization | GO:0061024 | 276 | 0.430 | |
| cell communication | GO:0007154 | 345 | 0.406 | |
| microautophagy | GO:0016237 | 43 | 0.405 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.345 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.341 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.304 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.270 | |
| vacuole organization | GO:0007033 | 75 | 0.243 | |
| protein phosphorylation | GO:0006468 | 197 | 0.225 | |
| membrane fusion | GO:0061025 | 73 | 0.219 | |
| protein localization to organelle | GO:0033365 | 337 | 0.187 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.170 | |
| regulation of cell communication | GO:0010646 | 124 | 0.165 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.150 | |
| single organism catabolic process | GO:0044712 | 619 | 0.150 | |
| response to nutrient levels | GO:0031667 | 150 | 0.149 | |
| piecemeal microautophagy of nucleus | GO:0034727 | 33 | 0.140 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.136 | |
| nucleophagy | GO:0044804 | 34 | 0.129 | |
| phosphorylation | GO:0016310 | 291 | 0.128 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.116 | |
| response to chemical | GO:0042221 | 390 | 0.094 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.094 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.094 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.076 | |
| response to external stimulus | GO:0009605 | 158 | 0.076 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.073 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.072 | |
| regulation of protein modification process | GO:0031399 | 110 | 0.071 | |
| macroautophagy | GO:0016236 | 55 | 0.068 | |
| protein localization to membrane | GO:0072657 | 102 | 0.063 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.062 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.062 | |
| response to starvation | GO:0042594 | 96 | 0.059 | |
| protein processing | GO:0016485 | 64 | 0.058 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.057 | |
| rna catabolic process | GO:0006401 | 118 | 0.053 | |
| traversing start control point of mitotic cell cycle | GO:0007089 | 7 | 0.046 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.044 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.044 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.042 | |
| single organism membrane fusion | GO:0044801 | 71 | 0.039 | |
| single organism signaling | GO:0044700 | 208 | 0.038 | |
| single organism developmental process | GO:0044767 | 258 | 0.038 | |
| peroxisome organization | GO:0007031 | 68 | 0.037 | |
| regulation of intracellular signal transduction | GO:1902531 | 78 | 0.033 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.033 | |
| mitochondrion organization | GO:0007005 | 261 | 0.033 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.032 | |
| regulation of signaling | GO:0023051 | 119 | 0.032 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.031 | |
| regulation of biological quality | GO:0065008 | 391 | 0.030 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.029 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.028 | |
| organelle inheritance | GO:0048308 | 51 | 0.028 | |
| regulation of transferase activity | GO:0051338 | 83 | 0.025 | |
| vacuole fusion | GO:0097576 | 40 | 0.025 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.024 | |
| cellular respiration | GO:0045333 | 82 | 0.024 | |
| translation | GO:0006412 | 230 | 0.023 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.022 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.021 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.020 | |
| developmental process | GO:0032502 | 261 | 0.019 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.018 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.017 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.017 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.017 | |
| endosomal transport | GO:0016197 | 86 | 0.017 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.017 | |
| regulation of localization | GO:0032879 | 127 | 0.017 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 125 | 0.015 | |
| regulation of protein localization | GO:0032880 | 62 | 0.015 | |
| regulation of translation in response to stress | GO:0043555 | 5 | 0.015 | |
| organelle assembly | GO:0070925 | 118 | 0.014 | |
| positive regulation of protein modification process | GO:0031401 | 49 | 0.014 | |
| cellular response to starvation | GO:0009267 | 90 | 0.014 | |
| generation of precursor metabolites and energy | GO:0006091 | 147 | 0.014 | |
| regulation of kinase activity | GO:0043549 | 71 | 0.013 | |
| autophagic vacuole assembly | GO:0000045 | 16 | 0.013 | |
| regulation of molecular function | GO:0065009 | 320 | 0.011 | |
| late nucleophagy | GO:0044805 | 17 | 0.011 | |
| protein targeting to membrane | GO:0006612 | 52 | 0.011 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.011 | |
| lipoprotein metabolic process | GO:0042157 | 40 | 0.011 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.011 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.011 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.011 | |
| endomembrane system organization | GO:0010256 | 74 | 0.011 | |
| c terminal protein amino acid modification | GO:0018410 | 8 | 0.011 | |
| positive regulation of cell communication | GO:0010647 | 28 | 0.011 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.010 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.010 | |
