| protein catabolic process | GO:0030163 | 221 | 0.765 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.637 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.619 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.617 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.570 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.529 | |
| establishment of protein localization | GO:0045184 | 367 | 0.495 | Human |
| disaccharide metabolic process | GO:0005984 | 25 | 0.493 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.404 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.372 | Rat |
| proteasomal protein catabolic process | GO:0010498 | 141 | 0.341 | |
| response to organic substance | GO:0010033 | 182 | 0.284 | Rat |
| cellular response to organic substance | GO:0071310 | 159 | 0.279 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.250 | |
| protein folding | GO:0006457 | 94 | 0.217 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.216 | |
| cell communication | GO:0007154 | 345 | 0.216 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.192 | |
| response to chemical | GO:0042221 | 390 | 0.188 | Rat |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.159 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.150 | |
| cellular response to heat | GO:0034605 | 53 | 0.149 | |
| oligosaccharide metabolic process | GO:0009311 | 35 | 0.145 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.142 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.141 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.141 | |
| response to temperature stimulus | GO:0009266 | 74 | 0.138 | Rat |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.135 | Rat |
| regulation of cellular component organization | GO:0051128 | 334 | 0.134 | |
| single organism signaling | GO:0044700 | 208 | 0.129 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.116 | |
| single organism cellular localization | GO:1902580 | 375 | 0.113 | Human |
| organophosphate metabolic process | GO:0019637 | 597 | 0.110 | |
| secretion by cell | GO:0032940 | 50 | 0.109 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.108 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.106 | |
| response to heat | GO:0009408 | 69 | 0.105 | Rat |
| response to extracellular stimulus | GO:0009991 | 156 | 0.099 | |
| response to nutrient levels | GO:0031667 | 150 | 0.098 | |
| response to oxidative stress | GO:0006979 | 99 | 0.094 | |
| regulation of transport | GO:0051049 | 85 | 0.084 | |
| proteolysis | GO:0006508 | 268 | 0.080 | |
| regulation of signaling | GO:0023051 | 119 | 0.077 | |
| cellular response to oxidative stress | GO:0034599 | 94 | 0.072 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.072 | Rat |
| carboxylic acid biosynthetic process | GO:0046394 | 152 | 0.067 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.063 | |
| protein transport | GO:0015031 | 345 | 0.060 | Human |
| meiotic cell cycle | GO:0051321 | 272 | 0.059 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.058 | Rat |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.056 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.053 | |
| protein ubiquitination | GO:0016567 | 118 | 0.051 | |
| cellular carbohydrate metabolic process | GO:0044262 | 135 | 0.051 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.050 | Rat |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.049 | |
| secretion | GO:0046903 | 50 | 0.048 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.048 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.048 | |
| cellular response to starvation | GO:0009267 | 90 | 0.048 | |
| signal transduction | GO:0007165 | 208 | 0.047 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.047 | Human |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.046 | |
| signaling | GO:0023052 | 208 | 0.045 | |
| cellular component disassembly | GO:0022411 | 86 | 0.045 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.044 | |
| response to oxygen containing compound | GO:1901700 | 61 | 0.042 | |
| developmental process | GO:0032502 | 261 | 0.041 | Rat |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.041 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.041 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.040 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.039 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.038 | |
| protein complex disassembly | GO:0043241 | 70 | 0.038 | |
| regulation of biological quality | GO:0065008 | 391 | 0.038 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.038 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.038 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.036 | Rat |
| single organism reproductive process | GO:0044702 | 159 | 0.036 | |
| gene silencing | GO:0016458 | 151 | 0.035 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.035 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.034 | |
| positive regulation of secretion | GO:0051047 | 2 | 0.034 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.033 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.033 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.033 | |
| response to topologically incorrect protein | GO:0035966 | 38 | 0.031 | Rat |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.031 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.031 | |
| intracellular protein transport | GO:0006886 | 319 | 0.031 | Human |
| cellular response to oxygen containing compound | GO:1901701 | 43 | 0.030 | |
| chromatin organization | GO:0006325 | 242 | 0.030 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.030 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.030 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.030 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.030 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.028 | |
| response to starvation | GO:0042594 | 96 | 0.027 | |
| ncrna processing | GO:0034470 | 330 | 0.027 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.027 | |
| mrna catabolic process | GO:0006402 | 93 | 0.027 | |
| organic acid biosynthetic process | GO:0016053 | 152 | 0.027 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.027 | Rat |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.027 | |
| regulation of localization | GO:0032879 | 127 | 0.026 | |
| single organism catabolic process | GO:0044712 | 619 | 0.026 | |
| response to external stimulus | GO:0009605 | 158 | 0.026 | |
| regulation of proteolysis | GO:0030162 | 44 | 0.025 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.024 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.024 | |
| cellular response to topologically incorrect protein | GO:0035967 | 32 | 0.024 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.024 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.024 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.023 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.023 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.023 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.023 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.023 | |
| trehalose metabolic process | GO:0005991 | 11 | 0.023 | |
| alcohol metabolic process | GO:0006066 | 112 | 0.022 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.022 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.022 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.022 | |
| multi organism process | GO:0051704 | 233 | 0.021 | |
| response to endogenous stimulus | GO:0009719 | 26 | 0.021 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.020 | |
| reproductive process | GO:0022414 | 248 | 0.020 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.020 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.019 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.019 | Rat |
| protein complex assembly | GO:0006461 | 302 | 0.019 | Human |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.018 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.018 | |
| cellular response to endogenous stimulus | GO:0071495 | 22 | 0.018 | |
| monocarboxylic acid metabolic process | GO:0032787 | 122 | 0.018 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.018 | Rat |
| mitotic cell cycle | GO:0000278 | 306 | 0.018 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.018 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.018 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.018 | |
| small molecule catabolic process | GO:0044282 | 88 | 0.018 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.018 | |
| negative regulation of binding | GO:0051100 | 4 | 0.017 | Rat |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.017 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.017 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.017 | |
| rna catabolic process | GO:0006401 | 118 | 0.017 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.016 | Rat |
| response to nitrogen compound | GO:1901698 | 18 | 0.016 | |
| protein targeting | GO:0006605 | 272 | 0.016 | Human |
| mitochondrion organization | GO:0007005 | 261 | 0.016 | Human |
| regulation of protein localization | GO:0032880 | 62 | 0.016 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.015 | |
| organic hydroxy compound metabolic process | GO:1901615 | 125 | 0.015 | |
| positive regulation of transport | GO:0051050 | 32 | 0.015 | |
| endocytosis | GO:0006897 | 90 | 0.015 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.015 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 224 | 0.014 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.014 | Human |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.013 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.013 | |
| regulation of growth | GO:0040008 | 50 | 0.013 | |
| ribosome disassembly | GO:0032790 | 3 | 0.013 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 267 | 0.013 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.013 | Rat |
| ion transport | GO:0006811 | 274 | 0.013 | |
| reciprocal meiotic recombination | GO:0007131 | 54 | 0.013 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.012 | |
| hormone transport | GO:0009914 | 1 | 0.012 | |
| programmed cell death | GO:0012501 | 30 | 0.012 | Rat |
| homeostatic process | GO:0042592 | 227 | 0.012 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.012 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.012 | |
| regulation of translation | GO:0006417 | 89 | 0.012 | |
| negative regulation of gtp catabolic process | GO:0033125 | 1 | 0.012 | |
| negative regulation of dna binding | GO:0043392 | 3 | 0.012 | Rat |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.011 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.011 | |
| cellular protein complex disassembly | GO:0043624 | 42 | 0.011 | |
| negative regulation of mrna metabolic process | GO:1903312 | 2 | 0.011 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.011 | Rat |
| regulation of cellular protein catabolic process | GO:1903362 | 36 | 0.011 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.011 | |
| atp catabolic process | GO:0006200 | 224 | 0.011 | |
| regulation of anatomical structure size | GO:0090066 | 50 | 0.010 | |
| organelle fission | GO:0048285 | 272 | 0.010 | |
| protein localization to organelle | GO:0033365 | 337 | 0.010 | Human |
| death | GO:0016265 | 30 | 0.010 | Rat |
| alcohol biosynthetic process | GO:0046165 | 75 | 0.010 | |
