| transmembrane transport | GO:0055085 | 349 | 0.987 | |
| metal ion transport | GO:0030001 | 75 | 0.963 | |
| inorganic ion transmembrane transport | GO:0098660 | 109 | 0.962 | |
| inorganic cation transmembrane transport | GO:0098662 | 98 | 0.960 | |
| cation transmembrane transport | GO:0098655 | 135 | 0.902 | |
| ion transport | GO:0006811 | 274 | 0.863 | |
| cation transport | GO:0006812 | 166 | 0.858 | |
| ion transmembrane transport | GO:0034220 | 200 | 0.773 | |
| transition metal ion transport | GO:0000041 | 45 | 0.633 | |
| cellular divalent inorganic cation homeostasis | GO:0072503 | 21 | 0.508 | |
| transition metal ion homeostasis | GO:0055076 | 59 | 0.456 | |
| divalent inorganic cation homeostasis | GO:0072507 | 21 | 0.403 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.382 | |
| ion homeostasis | GO:0050801 | 118 | 0.369 | |
| zinc ion transport | GO:0006829 | 9 | 0.362 | |
| cation homeostasis | GO:0055080 | 105 | 0.313 | |
| metal ion homeostasis | GO:0055065 | 79 | 0.304 | |
| chemical homeostasis | GO:0048878 | 137 | 0.286 | |
| cellular transition metal ion homeostasis | GO:0046916 | 59 | 0.269 | |
| cellular metal ion homeostasis | GO:0006875 | 78 | 0.237 | |
| regulation of biological quality | GO:0065008 | 391 | 0.233 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.218 | |
| signaling | GO:0023052 | 208 | 0.205 | |
| single organism catabolic process | GO:0044712 | 619 | 0.196 | |
| protein transport | GO:0015031 | 345 | 0.193 | |
| membrane organization | GO:0061024 | 276 | 0.180 | |
| response to chemical | GO:0042221 | 390 | 0.166 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.160 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.148 | |
| phosphorylation | GO:0016310 | 291 | 0.134 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.125 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.117 | |
| intracellular protein transport | GO:0006886 | 319 | 0.116 | |
| organic anion transport | GO:0015711 | 114 | 0.104 | |
| divalent metal ion transport | GO:0070838 | 17 | 0.101 | |
| negative regulation of cell communication | GO:0010648 | 33 | 0.101 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.101 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.100 | |
| atp metabolic process | GO:0046034 | 251 | 0.100 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.096 | |
| response to oxygen containing compound | GO:1901700 | 61 | 0.084 | |
| regulation of nuclear division | GO:0051783 | 103 | 0.083 | |
| cellular homeostasis | GO:0019725 | 138 | 0.081 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.080 | |
| protein localization to organelle | GO:0033365 | 337 | 0.077 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.077 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 262 | 0.076 | |
| divalent inorganic cation transport | GO:0072511 | 26 | 0.075 | |
| response to organic substance | GO:0010033 | 182 | 0.071 | |
| negative regulation of signaling | GO:0023057 | 30 | 0.070 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.069 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.068 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.065 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.063 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.063 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 267 | 0.062 | |
| homeostatic process | GO:0042592 | 227 | 0.061 | |
| regulation of cell communication | GO:0010646 | 124 | 0.061 | |
| establishment of protein localization | GO:0045184 | 367 | 0.061 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.060 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.055 | |
| regulation of transport | GO:0051049 | 85 | 0.053 | |
| cellular zinc ion homeostasis | GO:0006882 | 10 | 0.053 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.052 | |
| alpha amino acid biosynthetic process | GO:1901607 | 91 | 0.052 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.052 | |
| regulation of signaling | GO:0023051 | 119 | 0.050 | |
| regulation of molecular function | GO:0065009 | 320 | 0.049 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.047 | |
| ncrna processing | GO:0034470 | 330 | 0.047 | |
| zinc ion homeostasis | GO:0055069 | 10 | 0.046 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.045 | |
| maintenance of location | GO:0051235 | 66 | 0.043 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.043 | |
| anion transport | GO:0006820 | 145 | 0.042 | |
| monosaccharide transport | GO:0015749 | 24 | 0.041 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.041 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 265 | 0.041 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.040 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.040 | |
| protein targeting | GO:0006605 | 272 | 0.039 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 224 | 0.039 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.039 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.039 | |
| anion transmembrane transport | GO:0098656 | 79 | 0.038 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.038 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 224 | 0.036 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.036 | |
| regulation of transferase activity | GO:0051338 | 83 | 0.036 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.035 | |
| copper ion transport | GO:0006825 | 16 | 0.034 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.034 | |
| regulation of anatomical structure size | GO:0090066 | 50 | 0.033 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.033 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.032 | |
| multi organism process | GO:0051704 | 233 | 0.032 | |
| proteolysis | GO:0006508 | 268 | 0.032 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.032 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.030 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.030 | |
| regulation of localization | GO:0032879 | 127 | 0.030 | |
| organic acid catabolic process | GO:0016054 | 71 | 0.029 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.029 | |
| regulation of cellular component size | GO:0032535 | 50 | 0.029 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.029 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.028 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.028 | |
| indole containing compound metabolic process | GO:0042430 | 9 | 0.027 | |
| conjugation with cellular fusion | GO:0000747 | 106 | 0.027 | |
| cell communication | GO:0007154 | 345 | 0.026 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.026 | |
| single organism membrane organization | GO:0044802 | 275 | 0.025 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.025 | |
| atp catabolic process | GO:0006200 | 224 | 0.025 | |
| response to inorganic substance | GO:0010035 | 47 | 0.025 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.024 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.024 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.023 | |
| single organism signaling | GO:0044700 | 208 | 0.023 | |
| protein catabolic process | GO:0030163 | 221 | 0.022 | |
| carbohydrate transport | GO:0008643 | 33 | 0.022 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.022 | |
| detection of hexose stimulus | GO:0009732 | 3 | 0.022 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.021 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.021 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.021 | |
| detection of stimulus | GO:0051606 | 4 | 0.020 | |
| cellular response to pheromone | GO:0071444 | 88 | 0.020 | |
| protein maturation | GO:0051604 | 76 | 0.020 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.019 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.019 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.018 | |
| organophosphate ester transport | GO:0015748 | 45 | 0.018 | |
| vacuolar transport | GO:0007034 | 145 | 0.018 | |
| autophagy | GO:0006914 | 106 | 0.017 | |
| glycoprotein biosynthetic process | GO:0009101 | 61 | 0.017 | |
| regulation of protein modification process | GO:0031399 | 110 | 0.017 | |
| detection of monosaccharide stimulus | GO:0034287 | 3 | 0.017 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 27 | 0.016 | |
| single organism membrane invagination | GO:1902534 | 43 | 0.016 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.016 | |
| response to toxic substance | GO:0009636 | 9 | 0.016 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.016 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.016 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.016 | |
| small molecule catabolic process | GO:0044282 | 88 | 0.016 | |
| negative regulation of nuclear division | GO:0051784 | 62 | 0.015 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.015 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.015 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.015 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 16 | 0.015 | |
| regulation of cell size | GO:0008361 | 30 | 0.015 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.015 | |
| response to nutrient levels | GO:0031667 | 150 | 0.015 | |
| fungal type cell wall assembly | GO:0071940 | 53 | 0.014 | |
| aerobic respiration | GO:0009060 | 55 | 0.014 | |
| anatomical structure development | GO:0048856 | 160 | 0.014 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.014 | |
| regulation of protein phosphorylation | GO:0001932 | 75 | 0.014 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.014 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.014 | |
| cellular component morphogenesis | GO:0032989 | 97 | 0.014 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.014 | |
| iron ion homeostasis | GO:0055072 | 34 | 0.014 | |
| response to metal ion | GO:0010038 | 24 | 0.014 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 224 | 0.014 | |
| hexose transport | GO:0008645 | 24 | 0.013 | |
| microautophagy | GO:0016237 | 43 | 0.013 | |
| trna processing | GO:0008033 | 101 | 0.013 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.013 | |
| positive regulation of ion transport | GO:0043270 | 5 | 0.013 | |
| negative regulation of catalytic activity | GO:0043086 | 60 | 0.013 | |
| spore wall biogenesis | GO:0070590 | 52 | 0.013 | |
| cellular response to oxygen containing compound | GO:1901701 | 43 | 0.013 | |
| single organism cellular localization | GO:1902580 | 375 | 0.013 | |
| regulation of phosphorylation | GO:0042325 | 86 | 0.013 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.013 | |
| regulation of cellular amine metabolic process | GO:0033238 | 21 | 0.013 | |
| positive regulation of apoptotic process | GO:0043065 | 3 | 0.013 | |
| positive regulation of protein modification process | GO:0031401 | 49 | 0.013 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.013 | |
| dna replication | GO:0006260 | 147 | 0.012 | |
| reproductive process | GO:0022414 | 248 | 0.012 | |
| alpha amino acid metabolic process | GO:1901605 | 124 | 0.012 | |
| mitotic sister chromatid segregation | GO:0000070 | 85 | 0.012 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.012 | |
| cell division | GO:0051301 | 205 | 0.011 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.011 | |
| vacuole organization | GO:0007033 | 75 | 0.011 | |
| regulation of meiosis | GO:0040020 | 42 | 0.011 | |
| programmed cell death | GO:0012501 | 30 | 0.011 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.011 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.011 | |
| negative regulation of signal transduction | GO:0009968 | 30 | 0.011 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.011 | |
| mitochondrial translation | GO:0032543 | 52 | 0.011 | |
| organic hydroxy compound transport | GO:0015850 | 41 | 0.011 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.011 | |
| conjugation | GO:0000746 | 107 | 0.011 | |
| amine metabolic process | GO:0009308 | 51 | 0.010 | |
| external encapsulating structure organization | GO:0045229 | 146 | 0.010 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.010 | |