| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.857 | |
| proteolysis | GO:0006508 | 268 | 0.719 | |
| protein catabolic process | GO:0030163 | 221 | 0.618 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.401 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.278 | |
| mitochondrion organization | GO:0007005 | 261 | 0.247 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.242 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.221 | |
| protein processing | GO:0016485 | 64 | 0.206 | |
| protein complex assembly | GO:0006461 | 302 | 0.178 | |
| protein maturation | GO:0051604 | 76 | 0.168 | |
| single organism membrane organization | GO:0044802 | 275 | 0.163 | |
| single organism cellular localization | GO:1902580 | 375 | 0.161 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.151 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.146 | |
| lipid metabolic process | GO:0006629 | 269 | 0.138 | |
| cellular homeostasis | GO:0019725 | 138 | 0.135 | |
| membrane organization | GO:0061024 | 276 | 0.134 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.131 | |
| phosphorylation | GO:0016310 | 291 | 0.117 | |
| response to chemical | GO:0042221 | 390 | 0.112 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.111 | |
| misfolded or incompletely synthesized protein catabolic process | GO:0006515 | 21 | 0.110 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.104 | |
| homeostatic process | GO:0042592 | 227 | 0.102 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.098 | |
| single organism catabolic process | GO:0044712 | 619 | 0.095 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.087 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.081 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.081 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.080 | |
| glycerolipid metabolic process | GO:0046486 | 108 | 0.077 | |
| protein folding | GO:0006457 | 94 | 0.071 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.071 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.068 | |
| proteasomal protein catabolic process | GO:0010498 | 141 | 0.067 | |
| er associated ubiquitin dependent protein catabolic process | GO:0030433 | 46 | 0.067 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.066 | |
| protein import | GO:0017038 | 122 | 0.066 | |
| organelle fission | GO:0048285 | 272 | 0.063 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.063 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.062 | |
| glycerophospholipid metabolic process | GO:0006650 | 98 | 0.060 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.060 | |
| single organism developmental process | GO:0044767 | 258 | 0.059 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.058 | |
| cell aging | GO:0007569 | 70 | 0.057 | |
| oxidation reduction process | GO:0055114 | 353 | 0.056 | |
| inner mitochondrial membrane organization | GO:0007007 | 26 | 0.054 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.052 | |
| establishment of organelle localization | GO:0051656 | 96 | 0.052 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.052 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.050 | |
| phospholipid biosynthetic process | GO:0008654 | 89 | 0.049 | |
| protein transmembrane transport | GO:0071806 | 82 | 0.049 | |
| intracellular protein transmembrane transport | GO:0065002 | 80 | 0.049 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.048 | |
| cellular transition metal ion homeostasis | GO:0046916 | 59 | 0.047 | |
| response to external stimulus | GO:0009605 | 158 | 0.046 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.045 | |
| protein localization to organelle | GO:0033365 | 337 | 0.045 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.044 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.042 | |
| signal transduction | GO:0007165 | 208 | 0.042 | |
| organelle fusion | GO:0048284 | 85 | 0.042 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.041 | |
| cellular metal ion homeostasis | GO:0006875 | 78 | 0.041 | |
| establishment of protein localization | GO:0045184 | 367 | 0.041 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.040 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.039 | |
| organelle localization | GO:0051640 | 128 | 0.039 | |
| developmental process | GO:0032502 | 261 | 0.039 | |
| transition metal ion homeostasis | GO:0055076 | 59 | 0.039 | |
| mitochondrial membrane organization | GO:0007006 | 48 | 0.038 | |
| chemical homeostasis | GO:0048878 | 137 | 0.038 | |
| protein phosphorylation | GO:0006468 | 197 | 0.037 | |
| rna splicing | GO:0008380 | 131 | 0.037 | |
| cell communication | GO:0007154 | 345 | 0.037 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.037 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.037 | |
| response to organic substance | GO:0010033 | 182 | 0.036 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.036 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.035 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.034 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.033 | |
| response to temperature stimulus | GO:0009266 | 74 | 0.033 | |
| chromosome segregation | GO:0007059 | 159 | 0.033 | |
| metal ion homeostasis | GO:0055065 | 79 | 0.032 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.032 | |
| signaling | GO:0023052 | 208 | 0.032 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.032 | |
| mitochondrial transport | GO:0006839 | 76 | 0.032 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.031 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.031 | |
| aging | GO:0007568 | 71 | 0.031 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.030 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.030 | |
| cellular amide metabolic process | GO:0043603 | 59 | 0.029 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.029 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.029 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.029 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.029 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.029 | |
| cation homeostasis | GO:0055080 | 105 | 0.029 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.028 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.028 | |
| amine metabolic process | GO:0009308 | 51 | 0.027 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.027 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.027 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.027 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.026 | |
| establishment of protein localization to mitochondrion | GO:0072655 | 63 | 0.026 | |
| intracellular protein transmembrane import | GO:0044743 | 67 | 0.026 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.026 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.026 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.026 | |
| regulation of biological quality | GO:0065008 | 391 | 0.025 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.025 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.025 | |
| protein targeting | GO:0006605 | 272 | 0.025 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.025 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.024 | |
| positive regulation of organelle organization | GO:0010638 | 85 | 0.024 | |
| positive regulation of nucleotide metabolic process | GO:0045981 | 101 | 0.024 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.024 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.024 | |
| positive regulation of purine nucleotide metabolic process | GO:1900544 | 100 | 0.024 | |
| protein transport | GO:0015031 | 345 | 0.023 | |
| cell wall organization | GO:0071555 | 146 | 0.023 | |
| regulation of proteolysis | GO:0030162 | 44 | 0.023 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.023 | |
| peptide metabolic process | GO:0006518 | 28 | 0.023 | |
| nuclear division | GO:0000280 | 263 | 0.022 | |
| external encapsulating structure organization | GO:0045229 | 146 | 0.022 | |
| anion transport | GO:0006820 | 145 | 0.022 | |
| organic anion transport | GO:0015711 | 114 | 0.022 | |
| pyridine containing compound metabolic process | GO:0072524 | 53 | 0.021 | |
| response to unfolded protein | GO:0006986 | 29 | 0.021 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.021 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 109 | 0.021 | |
| single organism signaling | GO:0044700 | 208 | 0.021 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.021 | |
| glycerophospholipid biosynthetic process | GO:0046474 | 68 | 0.021 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.021 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.020 | |
| gene silencing | GO:0016458 | 151 | 0.020 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.020 | |
| chromatin modification | GO:0016568 | 200 | 0.020 | |
| microtubule based process | GO:0007017 | 117 | 0.020 | |
| cellular respiration | GO:0045333 | 82 | 0.019 | |
| translation | GO:0006412 | 230 | 0.019 | |
| regulation of cell division | GO:0051302 | 113 | 0.019 | |
| conjugation with cellular fusion | GO:0000747 | 106 | 0.019 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.019 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.019 | |
| positive regulation of protein complex assembly | GO:0031334 | 39 | 0.019 | |
| ion homeostasis | GO:0050801 | 118 | 0.019 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.019 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.019 | |
| response to oxidative stress | GO:0006979 | 99 | 0.019 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.019 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.019 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.019 | |
| response to nutrient levels | GO:0031667 | 150 | 0.018 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.018 | |
| positive regulation of translation | GO:0045727 | 34 | 0.018 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.018 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.018 | |
| response to topologically incorrect protein | GO:0035966 | 38 | 0.018 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.018 | |
| sexual reproduction | GO:0019953 | 216 | 0.018 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.018 | |
| single organism membrane fusion | GO:0044801 | 71 | 0.018 | |
| mitotic cell cycle phase transition | GO:0044772 | 141 | 0.018 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.018 | |
| dna recombination | GO:0006310 | 172 | 0.018 | |
| small molecule catabolic process | GO:0044282 | 88 | 0.018 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.017 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.017 | |
| regulation of intracellular signal transduction | GO:1902531 | 78 | 0.017 | |
| positive regulation of programmed cell death | GO:0043068 | 3 | 0.016 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.016 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.016 | |
| intracellular protein transport | GO:0006886 | 319 | 0.016 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.016 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.016 | |
| regulation of anatomical structure size | GO:0090066 | 50 | 0.016 | |
| regulation of cell communication | GO:0010646 | 124 | 0.016 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.016 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.016 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.016 | |
| regulation of nucleotide catabolic process | GO:0030811 | 106 | 0.016 | |
| fungal type cell wall organization | GO:0031505 | 145 | 0.016 | |
| alcohol metabolic process | GO:0006066 | 112 | 0.016 | |
| regulation of nucleotide metabolic process | GO:0006140 | 110 | 0.015 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.015 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.015 | |
| mitotic recombination | GO:0006312 | 55 | 0.015 | |
| membrane fusion | GO:0061025 | 73 | 0.015 | |
| response to heat | GO:0009408 | 69 | 0.015 | |
| negative regulation of signaling | GO:0023057 | 30 | 0.015 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.015 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.015 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.014 | |
| ncrna processing | GO:0034470 | 330 | 0.014 | |
| regulation of translation | GO:0006417 | 89 | 0.014 | |
| regulation of transcription from rna polymerase ii promoter in response to stress | GO:0043618 | 51 | 0.014 | |
| chromatin silencing at rdna | GO:0000183 | 32 | 0.014 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.014 | |
| cellular response to oxidative stress | GO:0034599 | 94 | 0.014 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.014 | |
| trna metabolic process | GO:0006399 | 151 | 0.014 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.013 | |
| positive regulation of apoptotic process | GO:0043065 | 3 | 0.013 | |
| mitochondrial genome maintenance | GO:0000002 | 40 | 0.013 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.013 | |
| conjugation | GO:0000746 | 107 | 0.013 | |
| protein complex disassembly | GO:0043241 | 70 | 0.013 | |
| response to inorganic substance | GO:0010035 | 47 | 0.013 | |
| regulation of dna templated transcription in response to stress | GO:0043620 | 51 | 0.013 | |
| acetate biosynthetic process | GO:0019413 | 4 | 0.013 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.013 | |
| positive regulation of purine nucleotide catabolic process | GO:0033123 | 97 | 0.013 | |
| regulation of molecular function | GO:0065009 | 320 | 0.013 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.013 | |
| rna splicing via transesterification reactions | GO:0000375 | 118 | 0.013 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.013 | |
| regulation of cellular component size | GO:0032535 | 50 | 0.013 | |
| protein localization to mitochondrion | GO:0070585 | 63 | 0.013 | |
| histone modification | GO:0016570 | 119 | 0.013 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.013 | |
| cellular developmental process | GO:0048869 | 191 | 0.013 | |
| negative regulation of signal transduction | GO:0009968 | 30 | 0.012 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.012 | |
| response to pheromone involved in conjugation with cellular fusion | GO:0000749 | 74 | 0.012 | |
| regulation of nucleoside metabolic process | GO:0009118 | 106 | 0.012 | |
| actin filament organization | GO:0007015 | 56 | 0.012 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.012 | |
| regulation of gtpase activity | GO:0043087 | 84 | 0.012 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.012 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.012 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.012 | |
| mitochondrion localization | GO:0051646 | 29 | 0.012 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.012 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.012 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.012 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.012 | |
| response to hypoxia | GO:0001666 | 4 | 0.012 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.012 | |
| transmembrane transport | GO:0055085 | 349 | 0.011 | |
| regulation of mitochondrion organization | GO:0010821 | 20 | 0.011 | |
| positive regulation of cell cycle process | GO:0090068 | 31 | 0.011 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.011 | |
| cellular component disassembly | GO:0022411 | 86 | 0.011 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.011 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.011 | |
| autophagy | GO:0006914 | 106 | 0.011 | |
| regulation of purine nucleotide catabolic process | GO:0033121 | 106 | 0.011 | |
| chromatin silencing at silent mating type cassette | GO:0030466 | 53 | 0.011 | |
| positive regulation of mitochondrion organization | GO:0010822 | 16 | 0.011 | |
| organelle inheritance | GO:0048308 | 51 | 0.011 | |
| regulation of response to drug | GO:2001023 | 3 | 0.011 | |
| negative regulation of mapk cascade | GO:0043409 | 11 | 0.011 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.011 | |
| establishment of protein localization to endoplasmic reticulum | GO:0072599 | 40 | 0.010 | |
| response to calcium ion | GO:0051592 | 1 | 0.010 | |
| chromatin silencing | GO:0006342 | 147 | 0.010 | |
| histone deacetylation | GO:0016575 | 26 | 0.010 | |
| organic acid biosynthetic process | GO:0016053 | 152 | 0.010 | |
| carboxylic acid biosynthetic process | GO:0046394 | 152 | 0.010 | |
| regulation of signaling | GO:0023051 | 119 | 0.010 | |
| carboxylic acid catabolic process | GO:0046395 | 71 | 0.010 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.010 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.010 | |
| regulation of protein complex assembly | GO:0043254 | 77 | 0.010 | |
| response to oxygen containing compound | GO:1901700 | 61 | 0.010 | |