| macromolecule catabolic process | GO:0009057 | 383 | 0.716 | |
| mrna metabolic process | GO:0016071 | 269 | 0.668 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.524 | |
| dna templated transcription elongation | GO:0006354 | 91 | 0.445 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 89 | 0.443 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 42 | 0.439 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.389 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.386 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.386 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.300 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.290 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.275 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.263 | |
| mrna catabolic process | GO:0006402 | 93 | 0.257 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.246 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.241 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.227 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.215 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.210 | |
| rna catabolic process | GO:0006401 | 118 | 0.208 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 40 | 0.195 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 81 | 0.195 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 194 | 0.180 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.179 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 38 | 0.173 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.161 | |
| regulation of dna templated transcription elongation | GO:0032784 | 44 | 0.158 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.156 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.128 | |
| nuclear transcribed mrna catabolic process deadenylation dependent decay | GO:0000288 | 44 | 0.120 | |
| rna 3 end processing | GO:0031123 | 88 | 0.112 | |
| mrna processing | GO:0006397 | 185 | 0.110 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.090 | |
| rna transport | GO:0050658 | 92 | 0.090 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.086 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.078 | |
| regulation of molecular function | GO:0065009 | 320 | 0.074 | |
| rna localization | GO:0006403 | 112 | 0.066 | |
| endocytosis | GO:0006897 | 90 | 0.065 | |
| protein catabolic process | GO:0030163 | 221 | 0.064 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.062 | |
| mrna 3 end processing | GO:0031124 | 54 | 0.062 | |
| translational initiation | GO:0006413 | 56 | 0.057 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.050 | |
| establishment of rna localization | GO:0051236 | 92 | 0.046 | |
| nucleic acid transport | GO:0050657 | 94 | 0.046 | |
| single organism membrane organization | GO:0044802 | 275 | 0.045 | |
| protein complex assembly | GO:0006461 | 302 | 0.044 | |
| intracellular protein transport | GO:0006886 | 319 | 0.039 | |
| regulation of biological quality | GO:0065008 | 391 | 0.038 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.037 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 181 | 0.037 | |
| nuclear transcribed mrna poly a tail shortening | GO:0000289 | 14 | 0.035 | |
| cell communication | GO:0007154 | 345 | 0.034 | |
| translation | GO:0006412 | 230 | 0.033 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.032 | |
| rna export from nucleus | GO:0006405 | 88 | 0.028 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.026 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.026 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.026 | |
| protein localization to organelle | GO:0033365 | 337 | 0.025 | |
| dna templated transcription initiation | GO:0006352 | 71 | 0.025 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.025 | |
| cofactor biosynthetic process | GO:0051188 | 80 | 0.022 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.021 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.020 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.019 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.019 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.018 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.018 | |
| signaling | GO:0023052 | 208 | 0.017 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.017 | |
| purine containing compound biosynthetic process | GO:0072522 | 53 | 0.017 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.016 | |
| telomere maintenance | GO:0000723 | 74 | 0.016 | |
| mrna export from nucleus | GO:0006406 | 60 | 0.016 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.015 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.015 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.015 | |
| deadenylation independent decapping of nuclear transcribed mrna | GO:0031087 | 5 | 0.015 | |
| sulfur compound metabolic process | GO:0006790 | 95 | 0.014 | |
| post golgi vesicle mediated transport | GO:0006892 | 72 | 0.013 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.013 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.013 | |
| endosomal transport | GO:0016197 | 86 | 0.013 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.012 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.012 | |
| nuclear transcribed mrna catabolic process exonucleolytic | GO:0000291 | 12 | 0.012 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.012 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.011 | |
| signal transduction | GO:0007165 | 208 | 0.011 | |
| single organism catabolic process | GO:0044712 | 619 | 0.011 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.010 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.010 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.010 | |
| single organism signaling | GO:0044700 | 208 | 0.010 | |
