| cellular amino acid metabolic process | GO:0006520 | 225 | 0.861 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.846 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.842 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.783 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.593 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.582 | |
| aromatic amino acid family metabolic process | GO:0009072 | 17 | 0.480 | |
| cellular amino acid biosynthetic process | GO:0008652 | 118 | 0.425 | |
| alpha amino acid metabolic process | GO:1901605 | 124 | 0.399 | |
| carboxylic acid biosynthetic process | GO:0046394 | 152 | 0.307 | |
| organic acid biosynthetic process | GO:0016053 | 152 | 0.298 | |
| alpha amino acid biosynthetic process | GO:1901607 | 91 | 0.235 | |
| oxidation reduction process | GO:0055114 | 353 | 0.204 | |
| indolalkylamine metabolic process | GO:0006586 | 9 | 0.174 | |
| small molecule catabolic process | GO:0044282 | 88 | 0.170 | |
| single organism catabolic process | GO:0044712 | 619 | 0.150 | |
| aromatic amino acid family biosynthetic process | GO:0009073 | 9 | 0.147 | |
| lipid metabolic process | GO:0006629 | 269 | 0.129 | |
| indole containing compound metabolic process | GO:0042430 | 9 | 0.110 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 125 | 0.108 | |
| generation of precursor metabolites and energy | GO:0006091 | 147 | 0.103 | |
| amine biosynthetic process | GO:0009309 | 9 | 0.092 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.087 | |
| tryptophan metabolic process | GO:0006568 | 9 | 0.079 | |
| aerobic respiration | GO:0009060 | 55 | 0.078 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.074 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.073 | |
| organic acid transport | GO:0015849 | 77 | 0.071 | |
| sulfur compound metabolic process | GO:0006790 | 95 | 0.068 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.067 | |
| amine metabolic process | GO:0009308 | 51 | 0.065 | |
| regulation of biological quality | GO:0065008 | 391 | 0.062 | |
| aspartate family amino acid metabolic process | GO:0009066 | 40 | 0.060 | |
| cellular biogenic amine metabolic process | GO:0006576 | 37 | 0.057 | |
| indole containing compound biosynthetic process | GO:0042435 | 5 | 0.055 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.048 | |
| organic acid catabolic process | GO:0016054 | 71 | 0.046 | |
| mitochondrion organization | GO:0007005 | 261 | 0.043 | |
| transmembrane transport | GO:0055085 | 349 | 0.042 | |
| pyridine nucleotide metabolic process | GO:0019362 | 45 | 0.042 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.038 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.037 | |
| carboxylic acid transport | GO:0046942 | 74 | 0.036 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.034 | |
| aspartate family amino acid biosynthetic process | GO:0009067 | 29 | 0.031 | |
| homeostatic process | GO:0042592 | 227 | 0.031 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.029 | |
| ion transport | GO:0006811 | 274 | 0.028 | |
| coenzyme metabolic process | GO:0006732 | 104 | 0.027 | |
| chemical homeostasis | GO:0048878 | 137 | 0.027 | |
| cellular modified amino acid metabolic process | GO:0006575 | 51 | 0.026 | |
| cellular amino acid catabolic process | GO:0009063 | 48 | 0.026 | |
| alcohol metabolic process | GO:0006066 | 112 | 0.026 | |
| ion homeostasis | GO:0050801 | 118 | 0.026 | |
| sulfur amino acid metabolic process | GO:0000096 | 34 | 0.025 | |
| proteolysis | GO:0006508 | 268 | 0.025 | |
| single organism carbohydrate catabolic process | GO:0044724 | 73 | 0.025 | |
| oxidoreduction coenzyme metabolic process | GO:0006733 | 58 | 0.025 | |
| sulfur compound biosynthetic process | GO:0044272 | 53 | 0.023 | |
| lipid catabolic process | GO:0016042 | 33 | 0.023 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.023 | |
| anion transport | GO:0006820 | 145 | 0.023 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.021 | |
| carboxylic acid catabolic process | GO:0046395 | 71 | 0.021 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.021 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.021 | |
| carbohydrate catabolic process | GO:0016052 | 77 | 0.021 | |
| tryptophan biosynthetic process | GO:0000162 | 5 | 0.021 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.020 | |
| nicotinamide nucleotide metabolic process | GO:0046496 | 44 | 0.020 | |
| serine family amino acid metabolic process | GO:0009069 | 25 | 0.019 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.019 | |
| peroxisome organization | GO:0007031 | 68 | 0.019 | |
| organic anion transport | GO:0015711 | 114 | 0.019 | |
| organophosphate ester transport | GO:0015748 | 45 | 0.019 | |
| organic hydroxy compound metabolic process | GO:1901615 | 125 | 0.018 | |
| methionine metabolic process | GO:0006555 | 19 | 0.018 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.018 | |
| cellular amide metabolic process | GO:0043603 | 59 | 0.017 | |
| water soluble vitamin metabolic process | GO:0006767 | 41 | 0.017 | |
| vitamin biosynthetic process | GO:0009110 | 38 | 0.017 | |
| hexose metabolic process | GO:0019318 | 78 | 0.016 | |
| rrna metabolic process | GO:0016072 | 244 | 0.016 | |
| monosaccharide catabolic process | GO:0046365 | 28 | 0.015 | |
| amino acid transport | GO:0006865 | 45 | 0.015 | |
| threonine metabolic process | GO:0006566 | 8 | 0.014 | |
| response to chemical | GO:0042221 | 390 | 0.014 | |
| cellular lipid catabolic process | GO:0044242 | 33 | 0.014 | |
| water soluble vitamin biosynthetic process | GO:0042364 | 38 | 0.014 | |
| pyridine containing compound metabolic process | GO:0072524 | 53 | 0.014 | |
| glutamine family amino acid biosynthetic process | GO:0009084 | 18 | 0.014 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.014 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.013 | |
| cellular carbohydrate biosynthetic process | GO:0034637 | 49 | 0.013 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.013 | |
| tricarboxylic acid metabolic process | GO:0072350 | 3 | 0.013 | |
| fatty acid metabolic process | GO:0006631 | 51 | 0.013 | |
| cellular homeostasis | GO:0019725 | 138 | 0.013 | |
| mitochondrial translation | GO:0032543 | 52 | 0.012 | |
| aging | GO:0007568 | 71 | 0.012 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.012 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 265 | 0.012 | |
| nucleobase metabolic process | GO:0009112 | 22 | 0.012 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.011 | |
| glucose metabolic process | GO:0006006 | 65 | 0.011 | |
| translation | GO:0006412 | 230 | 0.011 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.011 | |
| alpha amino acid catabolic process | GO:1901606 | 28 | 0.010 | |
| hexose catabolic process | GO:0019320 | 24 | 0.010 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.010 | |
| cofactor metabolic process | GO:0051186 | 126 | 0.010 | |
| cation transport | GO:0006812 | 166 | 0.010 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.010 | |
| cellular metal ion homeostasis | GO:0006875 | 78 | 0.010 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.010 | |