| golgi vesicle transport | GO:0048193 | 188 | 0.996 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.996 | |
| intra golgi vesicle mediated transport | GO:0006891 | 22 | 0.986 | |
| cvt pathway | GO:0032258 | 37 | 0.976 | |
| vacuolar transport | GO:0007034 | 145 | 0.955 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.939 | |
| single organism cellular localization | GO:1902580 | 375 | 0.905 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.868 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.842 | |
| retrograde transport vesicle recycling within golgi | GO:0000301 | 5 | 0.838 | |
| protein localization to organelle | GO:0033365 | 337 | 0.727 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.678 | |
| protein transport | GO:0015031 | 345 | 0.646 | |
| single organism membrane organization | GO:0044802 | 275 | 0.619 | |
| protein targeting | GO:0006605 | 272 | 0.604 | |
| er to golgi vesicle mediated transport | GO:0006888 | 86 | 0.496 | |
| response to external stimulus | GO:0009605 | 158 | 0.495 | |
| intracellular protein transport | GO:0006886 | 319 | 0.467 | |
| membrane organization | GO:0061024 | 276 | 0.442 | |
| organelle fusion | GO:0048284 | 85 | 0.405 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.389 | |
| macroautophagy | GO:0016236 | 55 | 0.385 | |
| retrograde vesicle mediated transport golgi to er | GO:0006890 | 28 | 0.308 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.285 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.280 | |
| peroxisome degradation | GO:0030242 | 22 | 0.239 | |
| cellular response to starvation | GO:0009267 | 90 | 0.211 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.200 | |
| endomembrane system organization | GO:0010256 | 74 | 0.189 | |
| vesicle fusion | GO:0006906 | 33 | 0.186 | |
| response to nutrient levels | GO:0031667 | 150 | 0.181 | |
| single organism membrane fusion | GO:0044801 | 71 | 0.147 | |
| cell communication | GO:0007154 | 345 | 0.146 | |
| retrograde transport endosome to golgi | GO:0042147 | 33 | 0.121 | |
| establishment of protein localization | GO:0045184 | 367 | 0.113 | |
| vesicle organization | GO:0016050 | 68 | 0.109 | |
| membrane fusion | GO:0061025 | 73 | 0.106 | |
| peroxisome organization | GO:0007031 | 68 | 0.095 | |
| snare complex assembly | GO:0035493 | 10 | 0.081 | |
| nuclear division | GO:0000280 | 263 | 0.080 | |
| endosomal transport | GO:0016197 | 86 | 0.072 | |
| autophagy | GO:0006914 | 106 | 0.071 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.069 | |
| single organism catabolic process | GO:0044712 | 619 | 0.065 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.042 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.037 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.037 | |
| response to organic substance | GO:0010033 | 182 | 0.036 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.035 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.034 | |
| regulation of vesicle fusion | GO:0031338 | 10 | 0.033 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.031 | |
| protein complex assembly | GO:0006461 | 302 | 0.031 | |
| vacuole fusion non autophagic | GO:0042144 | 40 | 0.031 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.030 | |
| organelle fission | GO:0048285 | 272 | 0.029 | |
| response to chemical | GO:0042221 | 390 | 0.029 | |
| golgi to vacuole transport | GO:0006896 | 23 | 0.029 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.028 | |
| vesicle fusion with golgi apparatus | GO:0048280 | 7 | 0.028 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.027 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.025 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.024 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.024 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.024 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.023 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.023 | |
| microautophagy | GO:0016237 | 43 | 0.023 | |
| macromolecule methylation | GO:0043414 | 85 | 0.023 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.022 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.021 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.021 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.021 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.020 | |
| regulation of biological quality | GO:0065008 | 391 | 0.020 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.020 | |
| regulation of snare complex assembly | GO:0035542 | 9 | 0.019 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 109 | 0.019 | |
| lipid metabolic process | GO:0006629 | 269 | 0.019 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.018 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.018 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.018 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.017 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.017 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.017 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.017 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.016 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 45 | 0.016 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.016 | |
| carboxylic acid biosynthetic process | GO:0046394 | 152 | 0.016 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.016 | |
| organelle assembly | GO:0070925 | 118 | 0.016 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.016 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.015 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.015 | |
| vacuole organization | GO:0007033 | 75 | 0.015 | |
| amine metabolic process | GO:0009308 | 51 | 0.015 | |
| dephosphorylation | GO:0016311 | 127 | 0.015 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.014 | |
| response to oxygen containing compound | GO:1901700 | 61 | 0.014 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.014 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.014 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.014 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.014 | |
| telomere organization | GO:0032200 | 75 | 0.014 | |
| telomere maintenance | GO:0000723 | 74 | 0.013 | |
| methylation | GO:0032259 | 101 | 0.013 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.013 | |
| trna processing | GO:0008033 | 101 | 0.013 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.013 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.013 | |
| positive regulation of protein complex assembly | GO:0031334 | 39 | 0.012 | |
| cellular biogenic amine metabolic process | GO:0006576 | 37 | 0.012 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.012 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.012 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.012 | |
| nuclear transcribed mrna catabolic process deadenylation dependent decay | GO:0000288 | 44 | 0.012 | |
| early endosome to golgi transport | GO:0034498 | 11 | 0.012 | |
| protein targeting to membrane | GO:0006612 | 52 | 0.012 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.012 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.012 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.012 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.011 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.011 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.011 | |
| mitochondrion organization | GO:0007005 | 261 | 0.011 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.011 | |
| regulation of purine nucleotide catabolic process | GO:0033121 | 106 | 0.011 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.011 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.011 | |
| protein phosphorylation | GO:0006468 | 197 | 0.011 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.011 | |
| copii coated vesicle budding | GO:0090114 | 12 | 0.011 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.010 | |
| single organism membrane invagination | GO:1902534 | 43 | 0.010 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.010 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.010 | |
