| rna modification | GO:0009451 | 99 | 0.918 | |
| trna modification | GO:0006400 | 75 | 0.777 | |
| trna metabolic process | GO:0006399 | 151 | 0.731 | |
| ncrna processing | GO:0034470 | 330 | 0.633 | |
| mitochondrion organization | GO:0007005 | 261 | 0.505 | |
| rrna modification | GO:0000154 | 19 | 0.337 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.234 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.225 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.224 | |
| generation of precursor metabolites and energy | GO:0006091 | 147 | 0.207 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.203 | |
| methylation | GO:0032259 | 101 | 0.189 | |
| oxidation reduction process | GO:0055114 | 353 | 0.174 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.174 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 125 | 0.159 | |
| rrna processing | GO:0006364 | 227 | 0.157 | |
| aerobic respiration | GO:0009060 | 55 | 0.149 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.132 | |
| trna processing | GO:0008033 | 101 | 0.115 | |
| pseudouridine synthesis | GO:0001522 | 13 | 0.112 | |
| rrna metabolic process | GO:0016072 | 244 | 0.111 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.110 | |
| organic anion transport | GO:0015711 | 114 | 0.092 | |
| ion transport | GO:0006811 | 274 | 0.091 | |
| transmembrane transport | GO:0055085 | 349 | 0.087 | |
| cellular respiration | GO:0045333 | 82 | 0.086 | |
| adenosine metabolic process | GO:0046085 | 9 | 0.086 | |
| establishment of protein localization | GO:0045184 | 367 | 0.080 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.078 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.076 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.072 | |
| single organism cellular localization | GO:1902580 | 375 | 0.068 | |
| protein targeting | GO:0006605 | 272 | 0.065 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.065 | |
| cofactor transport | GO:0051181 | 16 | 0.064 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.063 | |
| protein localization to organelle | GO:0033365 | 337 | 0.063 | |
| threonylcarbamoyladenosine metabolic process | GO:0070525 | 9 | 0.059 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.059 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.059 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.055 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.051 | |
| rna localization | GO:0006403 | 112 | 0.051 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.044 | |
| protein transport | GO:0015031 | 345 | 0.040 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.039 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.039 | |
| dna recombination | GO:0006310 | 172 | 0.038 | |
| translational initiation | GO:0006413 | 56 | 0.038 | |
| intracellular protein transport | GO:0006886 | 319 | 0.037 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.036 | |
| organelle fission | GO:0048285 | 272 | 0.036 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.035 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.033 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.032 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.031 | |
| intracellular protein transmembrane import | GO:0044743 | 67 | 0.031 | |
| rna catabolic process | GO:0006401 | 118 | 0.031 | |
| anion transport | GO:0006820 | 145 | 0.030 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.030 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.029 | |
| protein complex assembly | GO:0006461 | 302 | 0.029 | |
| mrna metabolic process | GO:0016071 | 269 | 0.029 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.029 | |
| dna replication | GO:0006260 | 147 | 0.029 | |
| rrna methylation | GO:0031167 | 13 | 0.028 | |
| trna wobble uridine modification | GO:0002098 | 26 | 0.027 | |
| organic acid transport | GO:0015849 | 77 | 0.027 | |
| mitochondrial transport | GO:0006839 | 76 | 0.026 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.026 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.025 | |
| macromolecule methylation | GO:0043414 | 85 | 0.025 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.025 | |
| single organism catabolic process | GO:0044712 | 619 | 0.025 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.025 | |
| rna methylation | GO:0001510 | 39 | 0.025 | |
| protein alkylation | GO:0008213 | 48 | 0.024 | |
| rna splicing via transesterification reactions with guanosine as nucleophile | GO:0000376 | 10 | 0.024 | |
| dna dependent dna replication | GO:0006261 | 115 | 0.024 | |
| translation | GO:0006412 | 230 | 0.024 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.024 | |
| amino acid transport | GO:0006865 | 45 | 0.023 | |
| rna transport | GO:0050658 | 92 | 0.023 | |
| organelle localization | GO:0051640 | 128 | 0.023 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.023 | |
| carbohydrate derivative transport | GO:1901264 | 27 | 0.023 | |
| developmental process | GO:0032502 | 261 | 0.022 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.022 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 89 | 0.022 | |
| organophosphate ester transport | GO:0015748 | 45 | 0.022 | |
| maturation of ssu rrna | GO:0030490 | 105 | 0.022 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.022 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.021 | |
| nucleic acid transport | GO:0050657 | 94 | 0.021 | |
| carboxylic acid transport | GO:0046942 | 74 | 0.021 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.021 | |
| rna splicing | GO:0008380 | 131 | 0.021 | |
| mitochondrial rna metabolic process | GO:0000959 | 24 | 0.021 | |
| regulation of biological quality | GO:0065008 | 391 | 0.021 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.021 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.021 | |
| dna repair | GO:0006281 | 236 | 0.021 | |
| establishment of rna localization | GO:0051236 | 92 | 0.020 | |
| nuclear division | GO:0000280 | 263 | 0.020 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.020 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.020 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.020 | |
| regulation of translation | GO:0006417 | 89 | 0.020 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.020 | |
| cell division | GO:0051301 | 205 | 0.020 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.019 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.019 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.019 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.019 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.018 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.018 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.018 | |
| reciprocal dna recombination | GO:0035825 | 54 | 0.018 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.018 | |
| mitochondrial genome maintenance | GO:0000002 | 40 | 0.018 | |
| mitochondrial trna modification | GO:0070900 | 5 | 0.018 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.017 | |
| response to chemical | GO:0042221 | 390 | 0.017 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.017 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.017 | |
| nuclear transcribed mrna catabolic process deadenylation dependent decay | GO:0000288 | 44 | 0.017 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.017 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.017 | |
| ribosome assembly | GO:0042255 | 57 | 0.017 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.017 | |
| metal ion transport | GO:0030001 | 75 | 0.016 | |
| regulation of dna metabolic process | GO:0051052 | 100 | 0.016 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.016 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.016 | |
| chromatin organization | GO:0006325 | 242 | 0.015 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.015 | |
| mrna catabolic process | GO:0006402 | 93 | 0.015 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.015 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.015 | |
| peptidyl lysine methylation | GO:0018022 | 24 | 0.015 | |
| organic acid biosynthetic process | GO:0016053 | 152 | 0.015 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.015 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.015 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.014 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.014 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.014 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.014 | |
| rna 3 end processing | GO:0031123 | 88 | 0.014 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.014 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.014 | |
| translational elongation | GO:0006414 | 32 | 0.014 | |
| cell communication | GO:0007154 | 345 | 0.014 | |
| ribosomal large subunit assembly | GO:0000027 | 35 | 0.014 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.014 | |
| rna phosphodiester bond hydrolysis | GO:0090501 | 112 | 0.014 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.014 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.014 | |
| protein transmembrane transport | GO:0071806 | 82 | 0.014 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.013 | |
| histone modification | GO:0016570 | 119 | 0.013 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.013 | |
| protein import | GO:0017038 | 122 | 0.013 | |
| protein localization to mitochondrion | GO:0070585 | 63 | 0.013 | |
| single organism developmental process | GO:0044767 | 258 | 0.013 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.013 | |
| pseudohyphal growth | GO:0007124 | 75 | 0.013 | |
| gtp catabolic process | GO:0006184 | 107 | 0.013 | |
| protein localization to membrane | GO:0072657 | 102 | 0.013 | |
| nuclear export | GO:0051168 | 124 | 0.013 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.013 | |
| establishment of protein localization to mitochondrion | GO:0072655 | 63 | 0.013 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.013 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.013 | |
| cell growth | GO:0016049 | 89 | 0.012 | |
| chromatin modification | GO:0016568 | 200 | 0.012 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.012 | |
| regulation of translational initiation | GO:0006446 | 18 | 0.012 | |
| organelle assembly | GO:0070925 | 118 | 0.012 | |
| protein acetylation | GO:0006473 | 59 | 0.012 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.012 | |
| dna geometric change | GO:0032392 | 43 | 0.012 | |
| proteolysis | GO:0006508 | 268 | 0.012 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.012 | |
| protein targeting to mitochondrion | GO:0006626 | 56 | 0.012 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.012 | |
| growth | GO:0040007 | 157 | 0.012 | |
| regulation of molecular function | GO:0065009 | 320 | 0.012 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.012 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.011 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.011 | |
| heme biosynthetic process | GO:0006783 | 14 | 0.011 | |
| monocarboxylic acid metabolic process | GO:0032787 | 122 | 0.011 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.011 | |
| cation transport | GO:0006812 | 166 | 0.011 | |
| water soluble vitamin biosynthetic process | GO:0042364 | 38 | 0.011 | |
| trna transport | GO:0051031 | 19 | 0.011 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.011 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.011 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.011 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.011 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.010 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.010 | |
| rna surveillance | GO:0071025 | 30 | 0.010 | |
| snrna metabolic process | GO:0016073 | 25 | 0.010 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.010 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.010 | |
| dna duplex unwinding | GO:0032508 | 42 | 0.010 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.010 | |