| organic acid metabolic process | GO:0006082 | 352 | 0.232 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.187 | |
| single organism catabolic process | GO:0044712 | 619 | 0.148 | |
| sulfur compound metabolic process | GO:0006790 | 95 | 0.115 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.101 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.101 | |
| cellular amino acid biosynthetic process | GO:0008652 | 118 | 0.097 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.092 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.086 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.083 | |
| lipid metabolic process | GO:0006629 | 269 | 0.080 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.075 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.073 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.073 | |
| monocarboxylic acid metabolic process | GO:0032787 | 122 | 0.069 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.066 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.064 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.064 | |
| response to chemical | GO:0042221 | 390 | 0.063 | |
| alpha amino acid metabolic process | GO:1901605 | 124 | 0.062 | |
| carboxylic acid catabolic process | GO:0046395 | 71 | 0.059 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.058 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.055 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.054 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.052 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.050 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.048 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.048 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.047 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.045 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.044 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.044 | |
| small molecule catabolic process | GO:0044282 | 88 | 0.044 | |
| alpha amino acid biosynthetic process | GO:1901607 | 91 | 0.043 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.043 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.040 | |
| single organism cellular localization | GO:1902580 | 375 | 0.040 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.040 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.040 | |
| regulation of biological quality | GO:0065008 | 391 | 0.039 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.037 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.037 | |
| chromatin modification | GO:0016568 | 200 | 0.036 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.036 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.035 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.035 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.035 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.034 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.033 | |
| organic acid biosynthetic process | GO:0016053 | 152 | 0.032 | |
| cellular lipid catabolic process | GO:0044242 | 33 | 0.032 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.031 | |
| carboxylic acid biosynthetic process | GO:0046394 | 152 | 0.031 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.031 | |
| organic acid catabolic process | GO:0016054 | 71 | 0.031 | |
| regulation of cell division | GO:0051302 | 113 | 0.030 | |
| chromatin silencing | GO:0006342 | 147 | 0.030 | |
| oxidation reduction process | GO:0055114 | 353 | 0.030 | |
| regulation of molecular function | GO:0065009 | 320 | 0.029 | |
| phosphorylation | GO:0016310 | 291 | 0.029 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.029 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.028 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.027 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.027 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.027 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.026 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.026 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.026 | |
| response to organic substance | GO:0010033 | 182 | 0.026 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.025 | |
| lipid catabolic process | GO:0016042 | 33 | 0.025 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 136 | 0.025 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.025 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.024 | |
| glycerophospholipid metabolic process | GO:0006650 | 98 | 0.023 | |
| homeostatic process | GO:0042592 | 227 | 0.023 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.023 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.023 | |
| organic hydroxy compound metabolic process | GO:1901615 | 125 | 0.023 | |
| establishment of protein localization | GO:0045184 | 367 | 0.023 | |
| nuclear division | GO:0000280 | 263 | 0.023 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.023 | |
| single organism developmental process | GO:0044767 | 258 | 0.022 | |
| cell communication | GO:0007154 | 345 | 0.022 | |
| proteolysis | GO:0006508 | 268 | 0.022 | |
| intracellular protein transmembrane transport | GO:0065002 | 80 | 0.022 | |
| response to inorganic substance | GO:0010035 | 47 | 0.022 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.022 | |
| cellular developmental process | GO:0048869 | 191 | 0.022 | |
| vacuolar transport | GO:0007034 | 145 | 0.022 | |
| organelle fission | GO:0048285 | 272 | 0.022 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.021 | |
| multi organism process | GO:0051704 | 233 | 0.021 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.021 | |
| ion transport | GO:0006811 | 274 | 0.021 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.021 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.021 | |
| organic anion transport | GO:0015711 | 114 | 0.021 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.020 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.020 | |
| cellular modified amino acid metabolic process | GO:0006575 | 51 | 0.020 | |
| developmental process | GO:0032502 | 261 | 0.020 | |
| cell wall organization or biogenesis | GO:0071554 | 190 | 0.020 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.020 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 147 | 0.020 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.020 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.019 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 181 | 0.019 | |
| mitochondrion organization | GO:0007005 | 261 | 0.019 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.019 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.019 | |
| sulfur amino acid metabolic process | GO:0000096 | 34 | 0.019 | |
| cellular amino acid catabolic process | GO:0009063 | 48 | 0.018 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.018 | |
| proteasomal protein catabolic process | GO:0010498 | 141 | 0.018 | |
| response to topologically incorrect protein | GO:0035966 | 38 | 0.018 | |
| reproductive process | GO:0022414 | 248 | 0.018 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.018 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.018 | |
| sporulation resulting in formation of a cellular spore | GO:0030435 | 129 | 0.018 | |
| protein phosphorylation | GO:0006468 | 197 | 0.018 | |
| protein ubiquitination | GO:0016567 | 118 | 0.018 | |
| dna replication | GO:0006260 | 147 | 0.018 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.018 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.017 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.017 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.017 | |
| ncrna processing | GO:0034470 | 330 | 0.017 | |
| protein import into mitochondrial matrix | GO:0030150 | 20 | 0.017 | |
| dna repair | GO:0006281 | 236 | 0.017 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.017 | |
| membrane organization | GO:0061024 | 276 | 0.017 | |
| sexual reproduction | GO:0019953 | 216 | 0.017 | |
| cell cycle phase transition | GO:0044770 | 144 | 0.017 | |
| protein transmembrane transport | GO:0071806 | 82 | 0.017 | |
| anatomical structure development | GO:0048856 | 160 | 0.017 | |
| mitotic cell cycle phase transition | GO:0044772 | 141 | 0.016 | |
| ascospore formation | GO:0030437 | 107 | 0.016 | |
| regulation of cellular response to drug | GO:2001038 | 3 | 0.016 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.016 | |
| regulation of mitotic cell cycle | GO:0007346 | 107 | 0.016 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.016 | |
| protein localization to mitochondrion | GO:0070585 | 63 | 0.016 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.016 | |
| protein localization to organelle | GO:0033365 | 337 | 0.016 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.016 | |
| response to unfolded protein | GO:0006986 | 29 | 0.016 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.016 | |
| establishment or maintenance of cell polarity | GO:0007163 | 96 | 0.015 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.015 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.015 | |
| sporulation | GO:0043934 | 132 | 0.015 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.015 | |
| rrna metabolic process | GO:0016072 | 244 | 0.015 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.015 | |
| response to oxidative stress | GO:0006979 | 99 | 0.015 | |
| fatty acid metabolic process | GO:0006631 | 51 | 0.015 | |
| serine family amino acid metabolic process | GO:0009069 | 25 | 0.015 | |
| protein import | GO:0017038 | 122 | 0.015 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.015 | |
| regulation of metal ion transport | GO:0010959 | 2 | 0.015 | |
| protein transport | GO:0015031 | 345 | 0.015 | |
| single organism membrane organization | GO:0044802 | 275 | 0.014 | |
| regulation of dna metabolic process | GO:0051052 | 100 | 0.014 | |
| regulation of response to drug | GO:2001023 | 3 | 0.014 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.014 | |
| positive regulation of programmed cell death | GO:0043068 | 3 | 0.014 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.014 | |
| fungal type cell wall biogenesis | GO:0009272 | 80 | 0.014 | |
| er associated ubiquitin dependent protein catabolic process | GO:0030433 | 46 | 0.014 | |
| sexual sporulation | GO:0034293 | 113 | 0.014 | |
| regulation of mitosis | GO:0007088 | 65 | 0.014 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.014 | |
| cell division | GO:0051301 | 205 | 0.014 | |
| coenzyme metabolic process | GO:0006732 | 104 | 0.014 | |
| ion transmembrane transport | GO:0034220 | 200 | 0.014 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.014 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.014 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.014 | |
| response to nutrient | GO:0007584 | 52 | 0.014 | |
| aspartate family amino acid biosynthetic process | GO:0009067 | 29 | 0.014 | |
| cell development | GO:0048468 | 107 | 0.013 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.013 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.013 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.013 | |
| cell wall biogenesis | GO:0042546 | 93 | 0.013 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.013 | |
| external encapsulating structure organization | GO:0045229 | 146 | 0.013 | |
| fungal type cell wall organization or biogenesis | GO:0071852 | 169 | 0.013 | |
| translation | GO:0006412 | 230 | 0.013 | |
| organophosphate biosynthetic process | GO:0090407 | 182 | 0.013 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.013 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.012 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.012 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.012 | |
| rrna processing | GO:0006364 | 227 | 0.012 | |
| dephosphorylation | GO:0016311 | 127 | 0.012 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.012 | |
| positive regulation of secretion | GO:0051047 | 2 | 0.012 | |
| anion transport | GO:0006820 | 145 | 0.012 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.012 | |
| chromatin organization | GO:0006325 | 242 | 0.012 | |
| regulation of nuclear division | GO:0051783 | 103 | 0.012 | |
| transmembrane transport | GO:0055085 | 349 | 0.012 | |
| cofactor metabolic process | GO:0051186 | 126 | 0.012 | |
| protein complex assembly | GO:0006461 | 302 | 0.012 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.012 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.012 | |
| positive regulation of apoptotic process | GO:0043065 | 3 | 0.012 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.012 | |
| detection of stimulus | GO:0051606 | 4 | 0.012 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.012 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.012 | |
| regulation of lipid metabolic process | GO:0019216 | 45 | 0.012 | |
| organic acid transport | GO:0015849 | 77 | 0.012 | |
| protein targeting | GO:0006605 | 272 | 0.012 | |
| cation transport | GO:0006812 | 166 | 0.012 | |
| aging | GO:0007568 | 71 | 0.012 | |
| protein folding | GO:0006457 | 94 | 0.011 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.011 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.011 | |
| protein catabolic process | GO:0030163 | 221 | 0.011 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.011 | |
| response to hypoxia | GO:0001666 | 4 | 0.011 | |
| peroxisome organization | GO:0007031 | 68 | 0.011 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.011 | |
| regulation of lipid catabolic process | GO:0050994 | 4 | 0.011 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.011 | |
| actin filament based process | GO:0030029 | 104 | 0.011 | |
| detection of carbohydrate stimulus | GO:0009730 | 3 | 0.011 | |
| regulation of fatty acid beta oxidation | GO:0031998 | 3 | 0.011 | |
| mitotic nuclear division | GO:0007067 | 131 | 0.011 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.011 | |
| aerobic respiration | GO:0009060 | 55 | 0.011 | |
| response to heat | GO:0009408 | 69 | 0.011 | |
| histone modification | GO:0016570 | 119 | 0.011 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.011 | |
| gene silencing | GO:0016458 | 151 | 0.011 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.011 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.011 | |
| intracellular protein transport | GO:0006886 | 319 | 0.011 | |
| golgi vesicle transport | GO:0048193 | 188 | 0.010 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.010 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 16 | 0.010 | |
| chemical homeostasis | GO:0048878 | 137 | 0.010 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.010 | |
| single organism reproductive process | GO:0044702 | 159 | 0.010 | |
| organelle inheritance | GO:0048308 | 51 | 0.010 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.010 | |
| regulation of translation | GO:0006417 | 89 | 0.010 | |
| dna recombination | GO:0006310 | 172 | 0.010 | |
| response to uv | GO:0009411 | 4 | 0.010 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.010 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.010 | |