| dna templated transcription initiation | GO:0006352 | 71 | 0.665 | |
| dna templated transcriptional preinitiation complex assembly | GO:0070897 | 51 | 0.447 | |
| rna polymerase ii transcriptional preinitiation complex assembly | GO:0051123 | 40 | 0.395 | |
| protein dna complex assembly | GO:0065004 | 105 | 0.382 | |
| transcription initiation from rna polymerase ii promoter | GO:0006367 | 55 | 0.288 | |
| intracellular protein transport | GO:0006886 | 319 | 0.264 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.168 | |
| protein localization to organelle | GO:0033365 | 337 | 0.160 | |
| single organism cellular localization | GO:1902580 | 375 | 0.156 | |
| protein import | GO:0017038 | 122 | 0.132 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.130 | Human |
| establishment of protein localization | GO:0045184 | 367 | 0.130 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.115 | |
| protein transmembrane transport | GO:0071806 | 82 | 0.112 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.103 | Human |
| protein targeting | GO:0006605 | 272 | 0.102 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.099 | |
| transmembrane transport | GO:0055085 | 349 | 0.099 | |
| intracellular protein transmembrane transport | GO:0065002 | 80 | 0.094 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.087 | Human |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.086 | Human |
| membrane organization | GO:0061024 | 276 | 0.083 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.083 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.083 | Human |
| protein localization to mitochondrion | GO:0070585 | 63 | 0.079 | |
| single organism membrane organization | GO:0044802 | 275 | 0.070 | |
| mitochondrion organization | GO:0007005 | 261 | 0.069 | |
| protein transport | GO:0015031 | 345 | 0.066 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.062 | Human |
| establishment of protein localization to membrane | GO:0090150 | 99 | 0.062 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.062 | |
| regulation of molecular function | GO:0065009 | 320 | 0.060 | Human |
| regulation of cellular component organization | GO:0051128 | 334 | 0.060 | |
| protein localization to membrane | GO:0072657 | 102 | 0.060 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.054 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.053 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.052 | |
| intracellular protein transmembrane import | GO:0044743 | 67 | 0.052 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.051 | Human |
| reproductive process | GO:0022414 | 248 | 0.051 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.050 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.048 | Human |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.046 | Human |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.044 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.043 | |
| response to chemical | GO:0042221 | 390 | 0.043 | |
| establishment of protein localization to mitochondrion | GO:0072655 | 63 | 0.041 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.040 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.040 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.039 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.038 | |
| protein complex assembly | GO:0006461 | 302 | 0.038 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.038 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.037 | Human |
| heterocycle catabolic process | GO:0046700 | 494 | 0.037 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.036 | Human |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.036 | |
| mitochondrial transport | GO:0006839 | 76 | 0.036 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.034 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.034 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.034 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.034 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.034 | Human |
| protein folding | GO:0006457 | 94 | 0.032 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.032 | |
| rrna processing | GO:0006364 | 227 | 0.031 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.031 | |
| phosphorylation | GO:0016310 | 291 | 0.031 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.030 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.030 | |
| nuclear transport | GO:0051169 | 165 | 0.030 | |
| multi organism process | GO:0051704 | 233 | 0.030 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.030 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.029 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.029 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.029 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.029 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.029 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.029 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.029 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.029 | |
| generation of precursor metabolites and energy | GO:0006091 | 147 | 0.027 | |
| ncrna processing | GO:0034470 | 330 | 0.027 | |
| transcription of nuclear large rrna transcript from rna polymerase i promoter | GO:0042790 | 19 | 0.027 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.027 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.027 | |
| ion transport | GO:0006811 | 274 | 0.026 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.026 | |
| mrna export from nucleus | GO:0006406 | 60 | 0.026 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.026 | |
| organic anion transport | GO:0015711 | 114 | 0.026 | |
| microtubule based process | GO:0007017 | 117 | 0.026 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.026 | |
| cation transport | GO:0006812 | 166 | 0.026 | |
| protein targeting to mitochondrion | GO:0006626 | 56 | 0.025 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 81 | 0.025 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.025 | |
| translation | GO:0006412 | 230 | 0.025 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.024 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.024 | |
| rrna metabolic process | GO:0016072 | 244 | 0.024 | |
| single organism catabolic process | GO:0044712 | 619 | 0.023 | |
| glycerophospholipid metabolic process | GO:0006650 | 98 | 0.023 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.023 | |
| positive regulation of organelle organization | GO:0010638 | 85 | 0.022 | |
| transcription from rna polymerase i promoter | GO:0006360 | 63 | 0.022 | |
| rna catabolic process | GO:0006401 | 118 | 0.022 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.022 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.021 | |
| alpha amino acid biosynthetic process | GO:1901607 | 91 | 0.021 | |
| cellular respiration | GO:0045333 | 82 | 0.021 | |
| regulation of translation | GO:0006417 | 89 | 0.021 | |
| mrna metabolic process | GO:0016071 | 269 | 0.021 | |
| cell differentiation | GO:0030154 | 161 | 0.021 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.021 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.021 | |
| protein import into mitochondrial matrix | GO:0030150 | 20 | 0.021 | |
| signaling | GO:0023052 | 208 | 0.021 | |
| mrna transport | GO:0051028 | 60 | 0.020 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.020 | |
| nuclear division | GO:0000280 | 263 | 0.020 | |
| single organism reproductive process | GO:0044702 | 159 | 0.020 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 38 | 0.020 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.020 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.020 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.020 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.019 | |
| regulation of dna templated transcription in response to stress | GO:0043620 | 51 | 0.019 | |
| metal ion transport | GO:0030001 | 75 | 0.019 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.019 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 40 | 0.018 | |
| rna transport | GO:0050658 | 92 | 0.018 | |
| cofactor metabolic process | GO:0051186 | 126 | 0.018 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.018 | |
| response to oxidative stress | GO:0006979 | 99 | 0.018 | |
| nuclear export | GO:0051168 | 124 | 0.018 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.018 | |
| cellular response to oxidative stress | GO:0034599 | 94 | 0.018 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.018 | |
| protein processing | GO:0016485 | 64 | 0.018 | |
| microtubule cytoskeleton organization | GO:0000226 | 109 | 0.018 | |
| carboxylic acid biosynthetic process | GO:0046394 | 152 | 0.018 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.017 | |
| single organism developmental process | GO:0044767 | 258 | 0.017 | |
| regulation of localization | GO:0032879 | 127 | 0.017 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.017 | |
| mrna catabolic process | GO:0006402 | 93 | 0.017 | |
| phospholipid biosynthetic process | GO:0008654 | 89 | 0.017 | |
| membrane lipid metabolic process | GO:0006643 | 67 | 0.017 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.017 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 89 | 0.017 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.017 | |
| regulation of biological quality | GO:0065008 | 391 | 0.017 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.017 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.017 | |
| cytoplasmic translation | GO:0002181 | 65 | 0.017 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.016 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.016 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.016 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.016 | |
| oxidation reduction process | GO:0055114 | 353 | 0.016 | |
| cellular developmental process | GO:0048869 | 191 | 0.016 | |
| signal transduction | GO:0007165 | 208 | 0.016 | |
| regulation of intracellular signal transduction | GO:1902531 | 78 | 0.016 | |
| transcription from rna polymerase iii promoter | GO:0006383 | 40 | 0.016 | |
| organelle inheritance | GO:0048308 | 51 | 0.016 | |
| developmental process | GO:0032502 | 261 | 0.016 | |
| protein catabolic process | GO:0030163 | 221 | 0.016 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.015 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.015 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.015 | |
| cell growth | GO:0016049 | 89 | 0.015 | |
| rna export from nucleus | GO:0006405 | 88 | 0.015 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.015 | |
| lipid metabolic process | GO:0006629 | 269 | 0.015 | |
| organic acid biosynthetic process | GO:0016053 | 152 | 0.015 | |
| rrna transcription | GO:0009303 | 31 | 0.015 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.015 | |
| monocarboxylic acid metabolic process | GO:0032787 | 122 | 0.015 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.015 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.015 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.015 | |
| endosomal transport | GO:0016197 | 86 | 0.015 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.015 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.015 | |
| cell surface receptor signaling pathway | GO:0007166 | 38 | 0.015 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.014 | |
| protein import into nucleus | GO:0006606 | 55 | 0.014 | |
| regulation of cellular localization | GO:0060341 | 50 | 0.014 | |
| regulation of nuclear division | GO:0051783 | 103 | 0.014 | |
| mitochondrial membrane organization | GO:0007006 | 48 | 0.014 | |
| cellular component morphogenesis | GO:0032989 | 97 | 0.014 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.014 | |
| oxidoreduction coenzyme metabolic process | GO:0006733 | 58 | 0.014 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.014 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.014 | |
| lipid transport | GO:0006869 | 58 | 0.014 | |
| cellular carbohydrate metabolic process | GO:0044262 | 135 | 0.014 | |
| telomere maintenance | GO:0000723 | 74 | 0.014 | |
| phosphatidylinositol metabolic process | GO:0046488 | 62 | 0.014 | |
| regulation of cellular amine metabolic process | GO:0033238 | 21 | 0.014 | |
| rna localization | GO:0006403 | 112 | 0.013 | |
| cell communication | GO:0007154 | 345 | 0.013 | |
| protein polymerization | GO:0051258 | 51 | 0.013 | |
| histone modification | GO:0016570 | 119 | 0.013 | |
| telomere organization | GO:0032200 | 75 | 0.013 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.013 | |
| ion transmembrane transport | GO:0034220 | 200 | 0.013 | |
| anatomical structure development | GO:0048856 | 160 | 0.013 | |
| regulation of transcription from rna polymerase ii promoter in response to stress | GO:0043618 | 51 | 0.013 | |
| vacuole fusion | GO:0097576 | 40 | 0.013 | |
| mitochondrial genome maintenance | GO:0000002 | 40 | 0.013 | |
| dna recombination | GO:0006310 | 172 | 0.012 | |
| negative regulation of molecular function | GO:0044092 | 68 | 0.012 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.012 | |
| anatomical structure homeostasis | GO:0060249 | 74 | 0.012 | |
| alpha amino acid metabolic process | GO:1901605 | 124 | 0.012 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.012 | Human |
| conjugation with cellular fusion | GO:0000747 | 106 | 0.012 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.012 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 45 | 0.012 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.012 | |
| glycerolipid metabolic process | GO:0046486 | 108 | 0.012 | |
| homeostatic process | GO:0042592 | 227 | 0.012 | |
| cell cycle checkpoint | GO:0000075 | 82 | 0.012 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.012 | |
| protein export from nucleus | GO:0006611 | 17 | 0.012 | |
| nuclear import | GO:0051170 | 57 | 0.012 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 49 | 0.012 | |
| mitotic recombination | GO:0006312 | 55 | 0.012 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.012 | |
| anion transport | GO:0006820 | 145 | 0.012 | |
| vacuole organization | GO:0007033 | 75 | 0.012 | |
| amine metabolic process | GO:0009308 | 51 | 0.012 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.012 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 125 | 0.012 | |
| regulation of signaling | GO:0023051 | 119 | 0.012 | |
| localization within membrane | GO:0051668 | 29 | 0.012 | |
| cellular amino acid biosynthetic process | GO:0008652 | 118 | 0.012 | |
| proteasome assembly | GO:0043248 | 31 | 0.012 | |
| regulation of cell division | GO:0051302 | 113 | 0.012 | |
| aerobic respiration | GO:0009060 | 55 | 0.011 | |
| regulation of dna templated transcription elongation | GO:0032784 | 44 | 0.011 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.011 | |
| regulation of protein localization | GO:0032880 | 62 | 0.011 | |
| organic acid transport | GO:0015849 | 77 | 0.011 | |
| cellular component disassembly | GO:0022411 | 86 | 0.011 | |
| negative regulation of catabolic process | GO:0009895 | 43 | 0.011 | |
| rna splicing | GO:0008380 | 131 | 0.011 | |
| positive regulation of translation | GO:0045727 | 34 | 0.011 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.011 | |
| regulation of carbohydrate metabolic process | GO:0006109 | 43 | 0.011 | |
| organelle fusion | GO:0048284 | 85 | 0.011 | |
| reciprocal dna recombination | GO:0035825 | 54 | 0.011 | |
| single organism signaling | GO:0044700 | 208 | 0.011 | |
| membrane lipid biosynthetic process | GO:0046467 | 54 | 0.011 | |
| vacuolar transport | GO:0007034 | 145 | 0.011 | |
| sexual reproduction | GO:0019953 | 216 | 0.011 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.011 | |
| chromatin organization | GO:0006325 | 242 | 0.011 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 109 | 0.011 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.011 | |
| single organism nuclear import | GO:1902593 | 56 | 0.011 | |
| lipid localization | GO:0010876 | 60 | 0.011 | |
| external encapsulating structure organization | GO:0045229 | 146 | 0.011 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 147 | 0.011 | |
| carboxylic acid transport | GO:0046942 | 74 | 0.010 | |
| dna templated transcription elongation | GO:0006354 | 91 | 0.010 | |
| filamentous growth | GO:0030447 | 124 | 0.010 | |
| proteasomal protein catabolic process | GO:0010498 | 141 | 0.010 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.010 | |
| regulation of phosphorylation | GO:0042325 | 86 | 0.010 | |
| organophosphate ester transport | GO:0015748 | 45 | 0.010 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.010 | |
| protein acylation | GO:0043543 | 66 | 0.010 | |
| nad metabolic process | GO:0019674 | 25 | 0.010 | |
| positive regulation of cytoskeleton organization | GO:0051495 | 39 | 0.010 | |
| dephosphorylation | GO:0016311 | 127 | 0.010 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.010 | |
| protein maturation | GO:0051604 | 76 | 0.010 | |
| positive regulation of dna templated transcription initiation | GO:2000144 | 13 | 0.010 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.010 | |
