| vesicle mediated transport | GO:0016192 | 335 | 0.675 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.343 | |
| protein targeting | GO:0006605 | 272 | 0.241 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.205 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.205 | |
| regulation of biological quality | GO:0065008 | 391 | 0.191 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.186 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.185 | |
| vacuolar transport | GO:0007034 | 145 | 0.142 | |
| dna repair | GO:0006281 | 236 | 0.140 | |
| protein ubiquitination | GO:0016567 | 118 | 0.138 | |
| single organism cellular localization | GO:1902580 | 375 | 0.137 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.134 | |
| macromolecule methylation | GO:0043414 | 85 | 0.126 | |
| protein localization to organelle | GO:0033365 | 337 | 0.126 | |
| dna recombination | GO:0006310 | 172 | 0.109 | |
| methylation | GO:0032259 | 101 | 0.096 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.091 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.090 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.079 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.077 | |
| single organism membrane organization | GO:0044802 | 275 | 0.074 | |
| chromatin silencing at telomere | GO:0006348 | 84 | 0.072 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.071 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.067 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.063 | |
| golgi vesicle transport | GO:0048193 | 188 | 0.060 | |
| organic anion transport | GO:0015711 | 114 | 0.060 | |
| organelle inheritance | GO:0048308 | 51 | 0.056 | |
| alpha amino acid biosynthetic process | GO:1901607 | 91 | 0.056 | |
| protein methylation | GO:0006479 | 48 | 0.056 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.056 | |
| homeostatic process | GO:0042592 | 227 | 0.055 | |
| histone methylation | GO:0016571 | 28 | 0.055 | |
| cellular homeostasis | GO:0019725 | 138 | 0.055 | |
| transmembrane transport | GO:0055085 | 349 | 0.054 | |
| intracellular protein transport | GO:0006886 | 319 | 0.053 | |
| protein complex assembly | GO:0006461 | 302 | 0.053 | |
| post golgi vesicle mediated transport | GO:0006892 | 72 | 0.052 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.052 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.049 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.047 | |
| alpha amino acid metabolic process | GO:1901605 | 124 | 0.047 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.046 | |
| positive regulation of gtpase activity | GO:0043547 | 80 | 0.045 | |
| cell communication | GO:0007154 | 345 | 0.044 | |
| single organism catabolic process | GO:0044712 | 619 | 0.044 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.043 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.043 | |
| histone ubiquitination | GO:0016574 | 17 | 0.042 | |
| cation homeostasis | GO:0055080 | 105 | 0.042 | |
| regulation of meiotic cell cycle | GO:0051445 | 43 | 0.041 | |
| membrane organization | GO:0061024 | 276 | 0.040 | |
| positive regulation of hydrolase activity | GO:0051345 | 112 | 0.040 | |
| monovalent inorganic cation homeostasis | GO:0055067 | 32 | 0.039 | |
| peroxisome organization | GO:0007031 | 68 | 0.039 | |
| histone h3 k4 methylation | GO:0051568 | 18 | 0.038 | |
| protein transport | GO:0015031 | 345 | 0.038 | |
| regulation of protein ubiquitination | GO:0031396 | 20 | 0.038 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.038 | |
| endocytosis | GO:0006897 | 90 | 0.037 | |
| cellular amino acid biosynthetic process | GO:0008652 | 118 | 0.036 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.035 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.035 | |
| anatomical structure homeostasis | GO:0060249 | 74 | 0.034 | |
| mitochondrial genome maintenance | GO:0000002 | 40 | 0.034 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.034 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.033 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.033 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.032 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.032 | |
| translational elongation | GO:0006414 | 32 | 0.031 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.030 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 109 | 0.030 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.029 | |
| regulation of nucleotide catabolic process | GO:0030811 | 106 | 0.029 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.029 | |
| gtp metabolic process | GO:0046039 | 107 | 0.028 | |
| rrna processing | GO:0006364 | 227 | 0.028 | |
| guanosine containing compound catabolic process | GO:1901069 | 109 | 0.028 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.028 | |
| nuclear division | GO:0000280 | 263 | 0.028 | |
| histone lysine methylation | GO:0034968 | 26 | 0.028 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.027 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.027 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.027 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.027 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.027 | |
| regulation of purine nucleotide catabolic process | GO:0033121 | 106 | 0.027 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.026 | |
| amine metabolic process | GO:0009308 | 51 | 0.026 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.026 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.026 | |
| endosomal transport | GO:0016197 | 86 | 0.026 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.026 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.026 | |
| anion transport | GO:0006820 | 145 | 0.026 | |
| regulation of gtpase activity | GO:0043087 | 84 | 0.025 | |
| protein monoubiquitination | GO:0006513 | 13 | 0.025 | |
| positive regulation of nucleoside metabolic process | GO:0045979 | 97 | 0.025 | |
| meiosis i | GO:0007127 | 92 | 0.025 | |
| protein alkylation | GO:0008213 | 48 | 0.025 | |
| telomere organization | GO:0032200 | 75 | 0.025 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.024 | |
| positive regulation of translation | GO:0045727 | 34 | 0.024 | |
| positive regulation of organelle organization | GO:0010638 | 85 | 0.024 | |
| ncrna processing | GO:0034470 | 330 | 0.023 | |
| membrane docking | GO:0022406 | 22 | 0.023 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.023 | |
| carboxylic acid biosynthetic process | GO:0046394 | 152 | 0.022 | |
| telomere maintenance | GO:0000723 | 74 | 0.022 | |
| cell aging | GO:0007569 | 70 | 0.022 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.022 | |
| organic acid biosynthetic process | GO:0016053 | 152 | 0.022 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.022 | |
| response to heat | GO:0009408 | 69 | 0.022 | |
| lipid metabolic process | GO:0006629 | 269 | 0.021 | |
| response to chemical | GO:0042221 | 390 | 0.021 | |
| ion homeostasis | GO:0050801 | 118 | 0.021 | |
| peptidyl lysine methylation | GO:0018022 | 24 | 0.021 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.020 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.020 | |
| regulation of chromatin modification | GO:1903308 | 23 | 0.020 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.020 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.020 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.020 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.020 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.020 | |
| regulation of gtp catabolic process | GO:0033124 | 84 | 0.019 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.019 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.019 | |
| positive regulation of purine nucleotide metabolic process | GO:1900544 | 100 | 0.019 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.019 | |
| er to golgi vesicle mediated transport | GO:0006888 | 86 | 0.019 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.019 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 16 | 0.018 | |
| single organism signaling | GO:0044700 | 208 | 0.018 | |
| monocarboxylic acid transport | GO:0015718 | 24 | 0.018 | |
| protein phosphorylation | GO:0006468 | 197 | 0.018 | |
| endomembrane system organization | GO:0010256 | 74 | 0.018 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.018 | |
| positive regulation of purine nucleotide catabolic process | GO:0033123 | 97 | 0.018 | |
| response to uv | GO:0009411 | 4 | 0.018 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.018 | |
| regulation of meiosis | GO:0040020 | 42 | 0.018 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.018 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.018 | |
| positive regulation of nucleotide metabolic process | GO:0045981 | 101 | 0.018 | |
| localization within membrane | GO:0051668 | 29 | 0.018 | |
| phosphorylation of rna polymerase ii c terminal domain | GO:0070816 | 20 | 0.017 | |
| regulation of cellular amine metabolic process | GO:0033238 | 21 | 0.017 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.017 | |
| gtp catabolic process | GO:0006184 | 107 | 0.017 | |
| chemical homeostasis | GO:0048878 | 137 | 0.017 | |
| conjugation | GO:0000746 | 107 | 0.017 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.017 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.016 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.016 | |
| response to glucose | GO:0009749 | 13 | 0.016 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 63 | 0.016 | |
| mitotic cell cycle checkpoint | GO:0007093 | 56 | 0.016 | |
| mitochondrion organization | GO:0007005 | 261 | 0.016 | |
| positive regulation of gtp catabolic process | GO:0033126 | 80 | 0.016 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.016 | |
| vacuole organization | GO:0007033 | 75 | 0.016 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.016 | |
| regulation of translation | GO:0006417 | 89 | 0.016 | |
| regulation of cellular response to stress | GO:0080135 | 50 | 0.016 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.016 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.016 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.016 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 59 | 0.015 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.015 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.015 | |
| oxidation reduction process | GO:0055114 | 353 | 0.015 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.015 | |
| single organism developmental process | GO:0044767 | 258 | 0.015 | |
| protein complex localization | GO:0031503 | 32 | 0.015 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.014 | |
| organophosphate ester transport | GO:0015748 | 45 | 0.014 | |
| regulation of vesicle mediated transport | GO:0060627 | 39 | 0.014 | |
| response to osmotic stress | GO:0006970 | 83 | 0.014 | |
| organelle fusion | GO:0048284 | 85 | 0.014 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 147 | 0.014 | |
| positive regulation of apoptotic process | GO:0043065 | 3 | 0.014 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.014 | |
| autophagy | GO:0006914 | 106 | 0.014 | |
| positive regulation of nucleotide catabolic process | GO:0030813 | 97 | 0.013 | |
| invasive filamentous growth | GO:0036267 | 65 | 0.013 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.013 | |
| maintenance of protein location | GO:0045185 | 53 | 0.013 | |
| snorna processing | GO:0043144 | 34 | 0.013 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.013 | |
| cell wall macromolecule biosynthetic process | GO:0044038 | 24 | 0.013 | |
| mitotic recombination | GO:0006312 | 55 | 0.013 | |
| ion transport | GO:0006811 | 274 | 0.013 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.013 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.013 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.013 | |
| regulation of histone modification | GO:0031056 | 18 | 0.013 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.013 | |
| regulation of cell cycle phase transition | GO:1901987 | 70 | 0.013 | |
| negative regulation of dna metabolic process | GO:0051053 | 36 | 0.013 | |
| cellular component macromolecule biosynthetic process | GO:0070589 | 24 | 0.013 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.013 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.013 | |
| cellular response to heat | GO:0034605 | 53 | 0.013 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.013 | |
| glycerophospholipid biosynthetic process | GO:0046474 | 68 | 0.013 | |
| phosphorylation | GO:0016310 | 291 | 0.012 | |
| regulation of chromosome organization | GO:0033044 | 66 | 0.012 | |
| cellular metal ion homeostasis | GO:0006875 | 78 | 0.012 | |
| mitotic dna integrity checkpoint | GO:0044774 | 18 | 0.012 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.012 | |
| er associated ubiquitin dependent protein catabolic process | GO:0030433 | 46 | 0.012 | |
| organelle localization | GO:0051640 | 128 | 0.012 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.012 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.012 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.012 | |
| guanosine containing compound metabolic process | GO:1901068 | 111 | 0.012 | |
| vesicle organization | GO:0016050 | 68 | 0.012 | |
| regulation of histone ubiquitination | GO:0033182 | 7 | 0.012 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.012 | |
| cellular monovalent inorganic cation homeostasis | GO:0030004 | 27 | 0.012 | |
| fungal type cell wall biogenesis | GO:0009272 | 80 | 0.012 | |
| signaling | GO:0023052 | 208 | 0.012 | |
| establishment of protein localization | GO:0045184 | 367 | 0.011 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.011 | |
| regulation of chromatin silencing at telomere | GO:0031938 | 27 | 0.011 | |
| cellular response to topologically incorrect protein | GO:0035967 | 32 | 0.011 | |
| response to topologically incorrect protein | GO:0035966 | 38 | 0.011 | |
| glycoprotein metabolic process | GO:0009100 | 62 | 0.011 | |
| positive regulation of programmed cell death | GO:0043068 | 3 | 0.011 | |
| vesicle docking | GO:0048278 | 16 | 0.011 | |
| regulation of protein modification by small protein conjugation or removal | GO:1903320 | 29 | 0.011 | |
| organic hydroxy compound biosynthetic process | GO:1901617 | 81 | 0.011 | |
| growth | GO:0040007 | 157 | 0.011 | |
| meiotic dna double strand break formation | GO:0042138 | 12 | 0.011 | |
| cell wall macromolecule metabolic process | GO:0044036 | 27 | 0.011 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.011 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.011 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.011 | |
| regulation of localization | GO:0032879 | 127 | 0.011 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.011 | |
| regulation of phosphorylation | GO:0042325 | 86 | 0.011 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.011 | |
| recombinational repair | GO:0000725 | 64 | 0.011 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.011 | |
| translation | GO:0006412 | 230 | 0.011 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.011 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.011 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.010 | |
| cellular polysaccharide biosynthetic process | GO:0033692 | 38 | 0.010 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.010 | |
| regulation of nucleoside metabolic process | GO:0009118 | 106 | 0.010 | |
| regulation of signaling | GO:0023051 | 119 | 0.010 | |
