| oxoacid metabolic process | GO:0043436 | 351 | 0.402 | |
| protein transport | GO:0015031 | 345 | 0.318 | |
| establishment of protein localization | GO:0045184 | 367 | 0.255 | |
| vacuolar transport | GO:0007034 | 145 | 0.228 | |
| ion transport | GO:0006811 | 274 | 0.227 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.211 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.207 | |
| microautophagy | GO:0016237 | 43 | 0.179 | |
| transmembrane transport | GO:0055085 | 349 | 0.176 | |
| single organism catabolic process | GO:0044712 | 619 | 0.170 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.132 | |
| single organism cellular localization | GO:1902580 | 375 | 0.129 | |
| organelle fusion | GO:0048284 | 85 | 0.128 | |
| single organism membrane invagination | GO:1902534 | 43 | 0.110 | |
| membrane fusion | GO:0061025 | 73 | 0.110 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.110 | Yeast |
| single organism membrane fusion | GO:0044801 | 71 | 0.104 | |
| protein targeting | GO:0006605 | 272 | 0.103 | |
| anion transport | GO:0006820 | 145 | 0.098 | |
| membrane organization | GO:0061024 | 276 | 0.092 | |
| vacuole organization | GO:0007033 | 75 | 0.091 | |
| vacuole fusion non autophagic | GO:0042144 | 40 | 0.087 | |
| inorganic ion transmembrane transport | GO:0098660 | 109 | 0.084 | |
| protein localization to organelle | GO:0033365 | 337 | 0.081 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.078 | |
| chromatin modification | GO:0016568 | 200 | 0.077 | |
| vacuole fusion | GO:0097576 | 40 | 0.077 | |
| ion transmembrane transport | GO:0034220 | 200 | 0.069 | |
| organic anion transport | GO:0015711 | 114 | 0.062 | |
| chromatin silencing | GO:0006342 | 147 | 0.061 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.060 | |
| carboxylic acid biosynthetic process | GO:0046394 | 152 | 0.057 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.057 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.057 | |
| single organism membrane organization | GO:0044802 | 275 | 0.057 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.053 | |
| membrane invagination | GO:0010324 | 43 | 0.053 | |
| response to chemical | GO:0042221 | 390 | 0.050 | Yeast |
| regulation of cellular component organization | GO:0051128 | 334 | 0.049 | Yeast |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.049 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.045 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.044 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.042 | |
| cell wall organization | GO:0071555 | 146 | 0.042 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.042 | |
| histone modification | GO:0016570 | 119 | 0.042 | |
| monocarboxylic acid metabolic process | GO:0032787 | 122 | 0.042 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.040 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.040 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.040 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.039 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.038 | |
| autophagy | GO:0006914 | 106 | 0.038 | |
| alcohol biosynthetic process | GO:0046165 | 75 | 0.038 | |
| gene silencing | GO:0016458 | 151 | 0.035 | |
| chromatin organization | GO:0006325 | 242 | 0.035 | |
| negative regulation of meiotic cell cycle | GO:0051447 | 24 | 0.034 | Yeast |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 194 | 0.034 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.033 | |
| chromatin silencing at silent mating type cassette | GO:0030466 | 53 | 0.033 | |
| fatty acid metabolic process | GO:0006631 | 51 | 0.033 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.032 | |
| cell division | GO:0051301 | 205 | 0.032 | Yeast |
| regulation of biological quality | GO:0065008 | 391 | 0.032 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.031 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.031 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.030 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.030 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.030 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.030 | |
| regulation of localization | GO:0032879 | 127 | 0.029 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 147 | 0.029 | |
| reproductive process | GO:0022414 | 248 | 0.029 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.029 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.028 | |
| regulation of cellular ketone metabolic process by positive regulation of transcription from rna polymerase ii promoter | GO:0072366 | 10 | 0.028 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.028 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.027 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.027 | |
| polyphosphate metabolic process | GO:0006797 | 12 | 0.026 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.026 | |
| rrna processing | GO:0006364 | 227 | 0.026 | |
| organic acid biosynthetic process | GO:0016053 | 152 | 0.026 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.025 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.025 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.025 | |
| inorganic anion transport | GO:0015698 | 30 | 0.025 | |
| regulation of cell division | GO:0051302 | 113 | 0.025 | Yeast |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.024 | |
| phosphorylation | GO:0016310 | 291 | 0.024 | |
| homeostatic process | GO:0042592 | 227 | 0.024 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.024 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.024 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.024 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.023 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.023 | |
| methylation | GO:0032259 | 101 | 0.023 | |
| negative regulation of nuclear division | GO:0051784 | 62 | 0.023 | Yeast |
| anion transmembrane transport | GO:0098656 | 79 | 0.023 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.021 | |
| monocarboxylic acid biosynthetic process | GO:0072330 | 35 | 0.021 | |
| cell communication | GO:0007154 | 345 | 0.021 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.021 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.021 | Yeast |
| signal transduction | GO:0007165 | 208 | 0.021 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.021 | |
| carbohydrate biosynthetic process | GO:0016051 | 82 | 0.021 | |
| actin cytoskeleton organization | GO:0030036 | 100 | 0.021 | |
| oxidation reduction process | GO:0055114 | 353 | 0.020 | |
| cell development | GO:0048468 | 107 | 0.020 | |
| membrane lipid metabolic process | GO:0006643 | 67 | 0.020 | |
| response to external stimulus | GO:0009605 | 158 | 0.020 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.020 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.020 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.020 | |
| lipid metabolic process | GO:0006629 | 269 | 0.020 | |
| regulation of meiosis | GO:0040020 | 42 | 0.019 | Yeast |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.019 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.019 | |
| negative regulation of cell cycle process | GO:0010948 | 86 | 0.019 | Yeast |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.019 | |
| sexual reproduction | GO:0019953 | 216 | 0.019 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.019 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.019 | |
| ribosome assembly | GO:0042255 | 57 | 0.019 | |
| translation | GO:0006412 | 230 | 0.019 | |
| external encapsulating structure organization | GO:0045229 | 146 | 0.019 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.018 | |
| growth | GO:0040007 | 157 | 0.018 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.018 | |
| regulation of lipid biosynthetic process | GO:0046890 | 32 | 0.018 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.018 | |
| protein complex assembly | GO:0006461 | 302 | 0.018 | |
| cation transport | GO:0006812 | 166 | 0.018 | |
| alcohol metabolic process | GO:0006066 | 112 | 0.018 | |
| fungal type cell wall organization or biogenesis | GO:0071852 | 169 | 0.018 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.018 | |
| carbohydrate derivative transport | GO:1901264 | 27 | 0.018 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.017 | |
| maturation of 5 8s rrna from tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna | GO:0000466 | 80 | 0.017 | |
| regulation of transcription from rna polymerase ii promoter in response to stress | GO:0043618 | 51 | 0.017 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.017 | |
| cellular homeostasis | GO:0019725 | 138 | 0.017 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.017 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.017 | |
| mitochondrion organization | GO:0007005 | 261 | 0.017 | |
| organophosphate ester transport | GO:0015748 | 45 | 0.017 | |
| maturation of 5 8s rrna | GO:0000460 | 80 | 0.017 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.017 | |
| transition metal ion homeostasis | GO:0055076 | 59 | 0.017 | |
| cation transmembrane transport | GO:0098655 | 135 | 0.017 | |
| fungal type cell wall organization | GO:0031505 | 145 | 0.017 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.016 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.016 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.016 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.016 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.016 | |
| plasma membrane selenite transport | GO:0097080 | 3 | 0.016 | |
| organic hydroxy compound metabolic process | GO:1901615 | 125 | 0.016 | |
| cell differentiation | GO:0030154 | 161 | 0.016 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.016 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.016 | |
| chemical homeostasis | GO:0048878 | 137 | 0.015 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.015 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.015 | Yeast |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.015 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.015 | |
| filamentous growth of a population of unicellular organisms | GO:0044182 | 109 | 0.015 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.015 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.015 | |
| response to organic substance | GO:0010033 | 182 | 0.015 | Yeast |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.015 | |
| copper ion import | GO:0015677 | 8 | 0.015 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.015 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.015 | |
| multi organism process | GO:0051704 | 233 | 0.014 | |
| endonucleolytic cleavage of tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna | GO:0000479 | 47 | 0.014 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.014 | Yeast |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.014 | |
| organelle inheritance | GO:0048308 | 51 | 0.014 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.014 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.014 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.014 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.014 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.014 | |
| inorganic cation transmembrane transport | GO:0098662 | 98 | 0.014 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.014 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.014 | |
| transition metal ion transport | GO:0000041 | 45 | 0.014 | |
| organelle fission | GO:0048285 | 272 | 0.014 | Yeast |
| fungal type cell wall biogenesis | GO:0009272 | 80 | 0.014 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.014 | |
| sporulation resulting in formation of a cellular spore | GO:0030435 | 129 | 0.014 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.014 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.014 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.013 | |
| rna phosphodiester bond hydrolysis | GO:0090501 | 112 | 0.013 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.013 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.013 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.013 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.013 | |
| fatty acid biosynthetic process | GO:0006633 | 22 | 0.013 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.013 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.013 | |
| response to inorganic substance | GO:0010035 | 47 | 0.013 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.013 | |
| cellular response to hypoxia | GO:0071456 | 4 | 0.013 | |
| regulation of meiotic cell cycle | GO:0051445 | 43 | 0.013 | Yeast |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.013 | |
| cellular response to oxidative stress | GO:0034599 | 94 | 0.013 | |
| protein catabolic process | GO:0030163 | 221 | 0.013 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.013 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 267 | 0.013 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.013 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.013 | |
| regulation of translation | GO:0006417 | 89 | 0.013 | |
| cell wall organization or biogenesis | GO:0071554 | 190 | 0.013 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.013 | |
| rrna metabolic process | GO:0016072 | 244 | 0.012 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.012 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.012 | Yeast |
| sexual sporulation | GO:0034293 | 113 | 0.012 | |
| sexual sporulation resulting in formation of a cellular spore | GO:0043935 | 113 | 0.012 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.012 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.012 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.012 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.012 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 147 | 0.012 | |
| ncrna processing | GO:0034470 | 330 | 0.012 | |
| single organism reproductive process | GO:0044702 | 159 | 0.012 | |
| nuclear division | GO:0000280 | 263 | 0.012 | Yeast |
| golgi vesicle transport | GO:0048193 | 188 | 0.011 | |
| chromatin remodeling | GO:0006338 | 80 | 0.011 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.011 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.011 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.011 | |
| carboxylic acid transport | GO:0046942 | 74 | 0.011 | |
| negative regulation of meiosis | GO:0045835 | 23 | 0.011 | Yeast |
| single organism developmental process | GO:0044767 | 258 | 0.011 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.011 | |
| nicotinamide nucleotide metabolic process | GO:0046496 | 44 | 0.011 | |
| positive regulation of apoptotic process | GO:0043065 | 3 | 0.011 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.011 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.011 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 136 | 0.011 | |
| cellular component disassembly | GO:0022411 | 86 | 0.011 | |
| cellular developmental process | GO:0048869 | 191 | 0.011 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.011 | |
| response to temperature stimulus | GO:0009266 | 74 | 0.011 | |
| negative regulation of cell division | GO:0051782 | 66 | 0.011 | Yeast |
| protein complex biogenesis | GO:0070271 | 314 | 0.011 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.011 | |
| ion homeostasis | GO:0050801 | 118 | 0.011 | |
| macromolecule methylation | GO:0043414 | 85 | 0.011 | |
| cell wall biogenesis | GO:0042546 | 93 | 0.011 | |
| response to hypoxia | GO:0001666 | 4 | 0.011 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.011 | |
| regulation of nuclear division | GO:0051783 | 103 | 0.010 | Yeast |
| ribosomal large subunit biogenesis | GO:0042273 | 98 | 0.010 | |
| amine metabolic process | GO:0009308 | 51 | 0.010 | |
| glycerolipid metabolic process | GO:0046486 | 108 | 0.010 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.010 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.010 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.010 | |
| filamentous growth | GO:0030447 | 124 | 0.010 | |
| mitochondrial translation | GO:0032543 | 52 | 0.010 | |
| regulation of lipid metabolic process | GO:0019216 | 45 | 0.010 | |
| generation of precursor metabolites and energy | GO:0006091 | 147 | 0.010 | |
| spore wall biogenesis | GO:0070590 | 52 | 0.010 | |
