| mrna metabolic process | GO:0016071 | 269 | 1.000 | |
| rna splicing via transesterification reactions | GO:0000375 | 118 | 1.000 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 109 | 1.000 | |
| mrna splicing via spliceosome | GO:0000398 | 108 | 0.997 | |
| mrna processing | GO:0006397 | 185 | 0.996 | |
| rna splicing | GO:0008380 | 131 | 0.991 | |
| spliceosomal complex assembly | GO:0000245 | 21 | 0.888 | |
| rna catabolic process | GO:0006401 | 118 | 0.838 | |
| ncrna processing | GO:0034470 | 330 | 0.777 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 89 | 0.765 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.678 | |
| translational initiation | GO:0006413 | 56 | 0.627 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.626 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.622 | |
| ncrna 3 end processing | GO:0043628 | 44 | 0.467 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.462 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.438 | |
| protein targeting | GO:0006605 | 272 | 0.365 | |
| rna localization | GO:0006403 | 112 | 0.340 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.252 | |
| mrna catabolic process | GO:0006402 | 93 | 0.250 | |
| mrna transport | GO:0051028 | 60 | 0.237 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.226 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.223 | |
| regulation of biological quality | GO:0065008 | 391 | 0.206 | |
| nuclear export | GO:0051168 | 124 | 0.205 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.174 | |
| regulation of translational initiation | GO:0006446 | 18 | 0.172 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.156 | |
| multi organism cellular process | GO:0044764 | 120 | 0.153 | |
| nuclear mrna surveillance | GO:0071028 | 22 | 0.115 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.114 | |
| anatomical structure development | GO:0048856 | 160 | 0.111 | |
| single organism developmental process | GO:0044767 | 258 | 0.110 | |
| rna 3 end processing | GO:0031123 | 88 | 0.107 | |
| single organism catabolic process | GO:0044712 | 619 | 0.104 | |
| response to chemical | GO:0042221 | 390 | 0.102 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.101 | |
| lipid metabolic process | GO:0006629 | 269 | 0.098 | |
| mrna export from nucleus | GO:0006406 | 60 | 0.096 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.089 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.076 | |
| regulation of translation | GO:0006417 | 89 | 0.068 | |
| dna templated transcription termination | GO:0006353 | 42 | 0.058 | |
| mitotic nuclear division | GO:0007067 | 131 | 0.056 | |
| rna export from nucleus | GO:0006405 | 88 | 0.052 | |
| microtubule based process | GO:0007017 | 117 | 0.051 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.050 | |
| regulation of chromatin organization | GO:1902275 | 23 | 0.049 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.046 | |
| microtubule cytoskeleton organization | GO:0000226 | 109 | 0.045 | |
| establishment of protein localization | GO:0045184 | 367 | 0.042 | |
| regulation of chromatin modification | GO:1903308 | 23 | 0.040 | |
| translation | GO:0006412 | 230 | 0.040 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.039 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.036 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.036 | |
| rna transport | GO:0050658 | 92 | 0.036 | |
| developmental process | GO:0032502 | 261 | 0.033 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.033 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.032 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.031 | |
| multi organism process | GO:0051704 | 233 | 0.030 | |
| nuclear rna surveillance | GO:0071027 | 30 | 0.030 | |
| nucleic acid transport | GO:0050657 | 94 | 0.029 | |
| gene silencing | GO:0016458 | 151 | 0.028 | |
| sexual reproduction | GO:0019953 | 216 | 0.028 | |
| establishment of protein localization to membrane | GO:0090150 | 99 | 0.028 | |
| response to organic substance | GO:0010033 | 182 | 0.027 | |
| response to temperature stimulus | GO:0009266 | 74 | 0.026 | |
| histone methylation | GO:0016571 | 28 | 0.026 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.026 | |
| protein localization to organelle | GO:0033365 | 337 | 0.024 | |
| rrna metabolic process | GO:0016072 | 244 | 0.024 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.023 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.023 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.023 | |
| organelle assembly | GO:0070925 | 118 | 0.023 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.022 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.022 | |
| protein localization to membrane | GO:0072657 | 102 | 0.022 | |
| gene silencing by rna | GO:0031047 | 3 | 0.021 | |
| dna repair | GO:0006281 | 236 | 0.021 | |
| histone lysine methylation | GO:0034968 | 26 | 0.021 | |
| rrna processing | GO:0006364 | 227 | 0.021 | |
| regulation of dna metabolic process | GO:0051052 | 100 | 0.021 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.021 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.020 | |
| nuclear transport | GO:0051169 | 165 | 0.020 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.020 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.020 | |
| membrane organization | GO:0061024 | 276 | 0.020 | |
| mrna splice site selection | GO:0006376 | 8 | 0.020 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.019 | |
| poly a mrna export from nucleus | GO:0016973 | 24 | 0.018 | |
| protein transport | GO:0015031 | 345 | 0.018 | |
| nuclear division | GO:0000280 | 263 | 0.018 | |
| mrna cis splicing via spliceosome | GO:0045292 | 4 | 0.017 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.017 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.017 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.016 | |
| termination of rna polymerase ii transcription | GO:0006369 | 26 | 0.016 | |
| transcription coupled nucleotide excision repair | GO:0006283 | 16 | 0.015 | |
| snorna 3 end processing | GO:0031126 | 21 | 0.015 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.015 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.013 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.013 | |
| endomembrane system organization | GO:0010256 | 74 | 0.013 | |
| response to nutrient levels | GO:0031667 | 150 | 0.013 | |
| chromatin silencing | GO:0006342 | 147 | 0.013 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.013 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.013 | |
| histone h3 k4 methylation | GO:0051568 | 18 | 0.013 | |
| spindle organization | GO:0007051 | 37 | 0.013 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.013 | |
| snorna metabolic process | GO:0016074 | 40 | 0.013 | |
| cell aging | GO:0007569 | 70 | 0.012 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.012 | |
| regulation of histone modification | GO:0031056 | 18 | 0.012 | |
| rna surveillance | GO:0071025 | 30 | 0.011 | |
| organelle fission | GO:0048285 | 272 | 0.011 | |
| regulation of response to dna damage stimulus | GO:2001020 | 17 | 0.011 | |
| fatty acid metabolic process | GO:0006631 | 51 | 0.011 | |
| response to external stimulus | GO:0009605 | 158 | 0.011 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.011 | |
| nuclear transcribed mrna catabolic process nonsense mediated decay | GO:0000184 | 15 | 0.010 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.010 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.010 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.010 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.010 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.010 | |