| single organism signaling | GO:0044700 | 208 | 0.731 | |
| single organism developmental process | GO:0044767 | 258 | 0.393 | |
| phosphorylation | GO:0016310 | 291 | 0.334 | |
| signaling | GO:0023052 | 208 | 0.317 | |
| cell communication | GO:0007154 | 345 | 0.310 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.282 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.171 | |
| protein catabolic process | GO:0030163 | 221 | 0.167 | Yeast |
| developmental process | GO:0032502 | 261 | 0.160 | |
| response to nutrient levels | GO:0031667 | 150 | 0.158 | |
| signal transduction | GO:0007165 | 208 | 0.152 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.147 | |
| organelle fission | GO:0048285 | 272 | 0.122 | Yeast |
| regulation of signaling | GO:0023051 | 119 | 0.108 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.100 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.097 | Yeast |
| regulation of cell communication | GO:0010646 | 124 | 0.095 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.093 | |
| lipid metabolic process | GO:0006629 | 269 | 0.083 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.083 | |
| nuclear division | GO:0000280 | 263 | 0.082 | Yeast |
| cellular response to organic substance | GO:0071310 | 159 | 0.074 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.062 | |
| single organism cellular localization | GO:1902580 | 375 | 0.059 | |
| cellular developmental process | GO:0048869 | 191 | 0.054 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.047 | Yeast |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.045 | Yeast |
| aging | GO:0007568 | 71 | 0.044 | |
| regulation of biological quality | GO:0065008 | 391 | 0.042 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.040 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.036 | |
| dna repair | GO:0006281 | 236 | 0.036 | Yeast |
| response to organic substance | GO:0010033 | 182 | 0.034 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.033 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.033 | |
| intracellular protein transport | GO:0006886 | 319 | 0.032 | |
| regulation of carbohydrate metabolic process | GO:0006109 | 43 | 0.032 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.031 | Yeast |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.031 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.031 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.029 | |
| growth | GO:0040007 | 157 | 0.029 | |
| protein phosphorylation | GO:0006468 | 197 | 0.029 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.027 | |
| negative regulation of binding | GO:0051100 | 4 | 0.026 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.025 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.025 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.025 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.025 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.025 | Yeast |
| response to organic cyclic compound | GO:0014070 | 1 | 0.024 | |
| ribosome disassembly | GO:0032790 | 3 | 0.024 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.023 | |
| regulation of nuclease activity | GO:0032069 | 8 | 0.023 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.023 | |
| protein complex assembly | GO:0006461 | 302 | 0.022 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.021 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.021 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.020 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.020 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.020 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.019 | |
| sporulation | GO:0043934 | 132 | 0.019 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.019 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.019 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.019 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.018 | Yeast |
| macromolecule catabolic process | GO:0009057 | 383 | 0.018 | Yeast |
| negative regulation of mrna metabolic process | GO:1903312 | 2 | 0.018 | |
| establishment of protein localization | GO:0045184 | 367 | 0.017 | |
| apoptotic process | GO:0006915 | 30 | 0.017 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.017 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.016 | |
| single organism catabolic process | GO:0044712 | 619 | 0.016 | |
| response to nitrogen compound | GO:1901698 | 18 | 0.016 | |
| regulation of small gtpase mediated signal transduction | GO:0051056 | 47 | 0.016 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.016 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.016 | |
| regulation of molecular function | GO:0065009 | 320 | 0.015 | Yeast |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.015 | |
| sporulation resulting in formation of a cellular spore | GO:0030435 | 129 | 0.015 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.015 | |
| regulation of cellular carbohydrate metabolic process | GO:0010675 | 41 | 0.015 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.015 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.015 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.014 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.014 | |
| positive regulation of adenylate cyclase activity | GO:0045762 | 3 | 0.014 | |
| regulation of protein binding | GO:0043393 | 3 | 0.014 | |
| oxidation reduction process | GO:0055114 | 353 | 0.013 | |
| alcohol metabolic process | GO:0006066 | 112 | 0.013 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.012 | |
| ras protein signal transduction | GO:0007265 | 29 | 0.012 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.012 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.012 | |
| positive regulation of cyclase activity | GO:0031281 | 3 | 0.012 | |
| response to external stimulus | GO:0009605 | 158 | 0.012 | |
| negative regulation of cell communication | GO:0010648 | 33 | 0.012 | |
| establishment of protein localization to membrane | GO:0090150 | 99 | 0.012 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.011 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.011 | |
| proteolysis | GO:0006508 | 268 | 0.011 | |
| regulation of intracellular signal transduction | GO:1902531 | 78 | 0.011 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.011 | |
| response to chemical | GO:0042221 | 390 | 0.011 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.011 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.011 | |
| positive regulation of transferase activity | GO:0051347 | 28 | 0.011 | |
| positive regulation of phosphorylation | GO:0042327 | 33 | 0.011 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.011 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.011 | |
| positive regulation of protein oligomerization | GO:0032461 | 2 | 0.010 | |
| protein transport | GO:0015031 | 345 | 0.010 | |
| regulation of nuclear division | GO:0051783 | 103 | 0.010 | |
| regulation of protein oligomerization | GO:0032459 | 2 | 0.010 | |
