| rna modification | GO:0009451 | 99 | 1.000 | |
| trna modification | GO:0006400 | 75 | 0.999 | |
| trna processing | GO:0008033 | 101 | 0.999 | |
| trna metabolic process | GO:0006399 | 151 | 0.998 | |
| ncrna processing | GO:0034470 | 330 | 0.987 | |
| rna methylation | GO:0001510 | 39 | 0.669 | |
| trna methylation | GO:0030488 | 21 | 0.497 | |
| methylation | GO:0032259 | 101 | 0.314 | |
| macromolecule methylation | GO:0043414 | 85 | 0.146 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.115 | |
| rrna metabolic process | GO:0016072 | 244 | 0.102 | |
| mitochondrial rna metabolic process | GO:0000959 | 24 | 0.098 | |
| rna phosphodiester bond hydrolysis | GO:0090501 | 112 | 0.091 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.083 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.078 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.077 | |
| pseudouridine synthesis | GO:0001522 | 13 | 0.076 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.071 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.065 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.060 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.050 | |
| telomere organization | GO:0032200 | 75 | 0.050 | |
| trna wobble base modification | GO:0002097 | 27 | 0.050 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.047 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.047 | |
| rrna methylation | GO:0031167 | 13 | 0.044 | |
| rrna processing | GO:0006364 | 227 | 0.044 | |
| mitochondrion organization | GO:0007005 | 261 | 0.043 | |
| cell division | GO:0051301 | 205 | 0.040 | |
| regulation of nuclear division | GO:0051783 | 103 | 0.040 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 194 | 0.039 | |
| developmental process | GO:0032502 | 261 | 0.039 | |
| growth | GO:0040007 | 157 | 0.035 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.034 | |
| telomere maintenance | GO:0000723 | 74 | 0.033 | |
| single organism catabolic process | GO:0044712 | 619 | 0.031 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.031 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.028 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.028 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.026 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.025 | |
| rrna modification | GO:0000154 | 19 | 0.025 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.025 | |
| ion transport | GO:0006811 | 274 | 0.024 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.023 | |
| translation | GO:0006412 | 230 | 0.023 | |
| organophosphate biosynthetic process | GO:0090407 | 182 | 0.023 | |
| regulation of cell division | GO:0051302 | 113 | 0.023 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.022 | |
| single organism developmental process | GO:0044767 | 258 | 0.021 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.021 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.021 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.021 | |
| regulation of translation | GO:0006417 | 89 | 0.020 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.020 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.020 | |
| organelle fission | GO:0048285 | 272 | 0.019 | |
| regulation of biological quality | GO:0065008 | 391 | 0.019 | |
| snrna metabolic process | GO:0016073 | 25 | 0.018 | |
| trna pseudouridine synthesis | GO:0031119 | 7 | 0.018 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.018 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.018 | |
| protein localization to organelle | GO:0033365 | 337 | 0.017 | |
| regulation of chromosome organization | GO:0033044 | 66 | 0.017 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.017 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.017 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.017 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.017 | |
| translational elongation | GO:0006414 | 32 | 0.016 | |
| regulation of molecular function | GO:0065009 | 320 | 0.016 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.016 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.015 | |
| proteasomal protein catabolic process | GO:0010498 | 141 | 0.015 | |
| phosphorylation | GO:0016310 | 291 | 0.015 | |
| reciprocal dna recombination | GO:0035825 | 54 | 0.015 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.014 | |
| anatomical structure homeostasis | GO:0060249 | 74 | 0.014 | |
| anatomical structure development | GO:0048856 | 160 | 0.014 | |
| mrna pseudouridine synthesis | GO:1990481 | 6 | 0.014 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.014 | |
| rna phosphodiester bond hydrolysis endonucleolytic | GO:0090502 | 79 | 0.014 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 89 | 0.014 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.014 | |
| regulation of protein catabolic process | GO:0042176 | 40 | 0.014 | |
| fungal type cell wall organization or biogenesis | GO:0071852 | 169 | 0.014 | |
| regulation of translational elongation | GO:0006448 | 25 | 0.014 | |
| rna catabolic process | GO:0006401 | 118 | 0.014 | |
| adenosine metabolic process | GO:0046085 | 9 | 0.014 | |
| sulfur compound metabolic process | GO:0006790 | 95 | 0.013 | |
| organelle localization | GO:0051640 | 128 | 0.013 | |
| mrna metabolic process | GO:0016071 | 269 | 0.013 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 181 | 0.013 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.013 | |
| trna wobble uridine modification | GO:0002098 | 26 | 0.013 | |
| mrna modification | GO:0016556 | 10 | 0.012 | |
| regulation of mitosis | GO:0007088 | 65 | 0.012 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.012 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.012 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.012 | |
| regulation of transferase activity | GO:0051338 | 83 | 0.012 | |
| rna 3 end processing | GO:0031123 | 88 | 0.012 | |
| nuclear division | GO:0000280 | 263 | 0.011 | |
| organic anion transport | GO:0015711 | 114 | 0.011 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.011 | |
| trna wobble position uridine thiolation | GO:0002143 | 5 | 0.011 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.011 | |
| regulation of kinase activity | GO:0043549 | 71 | 0.011 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.011 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.011 | |
| homeostatic process | GO:0042592 | 227 | 0.011 | |
| single organism carbohydrate catabolic process | GO:0044724 | 73 | 0.011 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.011 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.010 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.010 | |
| protein complex assembly | GO:0006461 | 302 | 0.010 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.010 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.010 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.010 | |
| negative regulation of molecular function | GO:0044092 | 68 | 0.010 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.010 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.010 | |
