| protein transmembrane transport | GO:0071806 | 82 | 0.987 | |
| intracellular protein transmembrane transport | GO:0065002 | 80 | 0.970 | |
| protein import | GO:0017038 | 122 | 0.963 | |
| intracellular protein transmembrane import | GO:0044743 | 67 | 0.957 | |
| establishment of protein localization to peroxisome | GO:0072663 | 22 | 0.934 | |
| protein targeting to peroxisome | GO:0006625 | 22 | 0.926 | |
| protein localization to peroxisome | GO:0072662 | 22 | 0.923 | |
| peroxisomal transport | GO:0043574 | 22 | 0.871 | |
| protein targeting | GO:0006605 | 272 | 0.868 | |
| peroxisome organization | GO:0007031 | 68 | 0.855 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.770 | |
| protein localization to organelle | GO:0033365 | 337 | 0.637 | |
| intracellular protein transport | GO:0006886 | 319 | 0.617 | |
| protein import into peroxisome matrix | GO:0016558 | 20 | 0.611 | |
| protein transport | GO:0015031 | 345 | 0.480 | |
| single organism cellular localization | GO:1902580 | 375 | 0.467 | |
| establishment of protein localization | GO:0045184 | 367 | 0.414 | |
| transmembrane transport | GO:0055085 | 349 | 0.238 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.159 | |
| protein import into peroxisome matrix receptor recycling | GO:0016562 | 5 | 0.151 | |
| protein ubiquitination | GO:0016567 | 118 | 0.147 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.118 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.115 | |
| protein complex assembly | GO:0006461 | 302 | 0.099 | |
| protein import into peroxisome matrix docking | GO:0016560 | 5 | 0.095 | |
| protein catabolic process | GO:0030163 | 221 | 0.081 | |
| cell communication | GO:0007154 | 345 | 0.081 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.078 | |
| single organism catabolic process | GO:0044712 | 619 | 0.073 | |
| single organism membrane organization | GO:0044802 | 275 | 0.072 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.072 | |
| protein targeting to membrane | GO:0006612 | 52 | 0.067 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.062 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.059 | |
| response to chemical | GO:0042221 | 390 | 0.058 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.058 | |
| lipid catabolic process | GO:0016042 | 33 | 0.058 | |
| fatty acid metabolic process | GO:0006631 | 51 | 0.054 | |
| negative regulation of molecular function | GO:0044092 | 68 | 0.052 | |
| microtubule based process | GO:0007017 | 117 | 0.047 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.047 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.046 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.045 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.045 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.044 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.043 | |
| membrane organization | GO:0061024 | 276 | 0.043 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.042 | |
| negative regulation of protein complex assembly | GO:0031333 | 15 | 0.041 | |
| protein to membrane docking | GO:0022615 | 5 | 0.040 | |
| signaling | GO:0023052 | 208 | 0.039 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.038 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.038 | |
| protein localization to membrane | GO:0072657 | 102 | 0.038 | |
| protein polyubiquitination | GO:0000209 | 20 | 0.037 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.037 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.037 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.036 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.036 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.036 | |
| cellular lipid catabolic process | GO:0044242 | 33 | 0.036 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.035 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.035 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.035 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.034 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.034 | |
| proteolysis | GO:0006508 | 268 | 0.034 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.034 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.031 | |
| cellular component disassembly | GO:0022411 | 86 | 0.030 | |
| lipid localization | GO:0010876 | 60 | 0.030 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.029 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.029 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.029 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.028 | |
| establishment of protein localization to membrane | GO:0090150 | 99 | 0.028 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.028 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.028 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.028 | |
| fatty acid catabolic process | GO:0009062 | 17 | 0.027 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.027 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.026 | |
| monocarboxylic acid metabolic process | GO:0032787 | 122 | 0.025 | |
| maintenance of location | GO:0051235 | 66 | 0.024 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.023 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.023 | |
| carboxylic acid catabolic process | GO:0046395 | 71 | 0.023 | |
| regulation of molecular function | GO:0065009 | 320 | 0.023 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.023 | |
| aging | GO:0007568 | 71 | 0.023 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.022 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.022 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.022 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.021 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.021 | |
| lipid transport | GO:0006869 | 58 | 0.021 | |
| gene silencing | GO:0016458 | 151 | 0.021 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.021 | |
| organophosphate biosynthetic process | GO:0090407 | 182 | 0.021 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.021 | |
| chromatin organization | GO:0006325 | 242 | 0.021 | |
| signal transduction | GO:0007165 | 208 | 0.021 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.021 | |
| organic hydroxy compound metabolic process | GO:1901615 | 125 | 0.021 | |
| regulation of biological quality | GO:0065008 | 391 | 0.020 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.020 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.020 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.020 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.019 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 224 | 0.019 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.019 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.019 | |
| organelle inheritance | GO:0048308 | 51 | 0.019 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.019 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.018 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.018 | |
| maintenance of protein location in cell | GO:0032507 | 50 | 0.018 | |
| translation | GO:0006412 | 230 | 0.018 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.018 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.018 | |
| single organism developmental process | GO:0044767 | 258 | 0.018 | |
| cellular response to oxidative stress | GO:0034599 | 94 | 0.017 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.017 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 224 | 0.017 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.017 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.017 | |
| cellular carbohydrate metabolic process | GO:0044262 | 135 | 0.017 | |
| alcohol metabolic process | GO:0006066 | 112 | 0.017 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.017 | |
| maintenance of protein location | GO:0045185 | 53 | 0.017 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.016 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 262 | 0.016 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.016 | |
| atp metabolic process | GO:0046034 | 251 | 0.016 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.016 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.016 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.016 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 181 | 0.016 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.016 | |
| organic hydroxy compound biosynthetic process | GO:1901617 | 81 | 0.016 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.016 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.015 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.015 | |
| regulation of cell communication | GO:0010646 | 124 | 0.015 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.015 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.014 | |
| lipid metabolic process | GO:0006629 | 269 | 0.014 | |
| developmental process | GO:0032502 | 261 | 0.014 | |
| membrane docking | GO:0022406 | 22 | 0.014 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.014 | |
| atp catabolic process | GO:0006200 | 224 | 0.014 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.014 | |
| cellular protein complex disassembly | GO:0043624 | 42 | 0.013 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.013 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.013 | |
| regulation of phosphorylation | GO:0042325 | 86 | 0.013 | |
| mitochondrion organization | GO:0007005 | 261 | 0.013 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.013 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.013 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.013 | |
| lipid oxidation | GO:0034440 | 13 | 0.013 | |
| regulation of protein modification process | GO:0031399 | 110 | 0.012 | |
| alcohol biosynthetic process | GO:0046165 | 75 | 0.012 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.012 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.012 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.012 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.012 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.012 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.012 | |
| regulation of translation | GO:0006417 | 89 | 0.012 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.012 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.012 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.011 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 262 | 0.011 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.011 | |
| protein complex disassembly | GO:0043241 | 70 | 0.011 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.011 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.011 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.011 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.011 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.011 | |
| monocarboxylic acid catabolic process | GO:0072329 | 26 | 0.011 | |
| exocytosis | GO:0006887 | 42 | 0.011 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.011 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 267 | 0.010 | |
| cell cycle phase transition | GO:0044770 | 144 | 0.010 | |
| cell differentiation | GO:0030154 | 161 | 0.010 | |
| glycoprotein metabolic process | GO:0009100 | 62 | 0.010 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.010 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.010 | |