| transmembrane transport | GO:0055085 | 349 | 0.974 | |
| protein transmembrane transport | GO:0071806 | 82 | 0.947 | |
| intracellular protein transmembrane transport | GO:0065002 | 80 | 0.928 | |
| protein targeting | GO:0006605 | 272 | 0.908 | |
| protein import | GO:0017038 | 122 | 0.906 | |
| peroxisome organization | GO:0007031 | 68 | 0.893 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.855 | |
| protein import into peroxisome matrix | GO:0016558 | 20 | 0.849 | |
| protein targeting to peroxisome | GO:0006625 | 22 | 0.824 | |
| intracellular protein transmembrane import | GO:0044743 | 67 | 0.788 | |
| protein transport | GO:0015031 | 345 | 0.786 | |
| peroxisomal transport | GO:0043574 | 22 | 0.752 | |
| establishment of protein localization | GO:0045184 | 367 | 0.750 | |
| intracellular protein transport | GO:0006886 | 319 | 0.726 | |
| protein localization to peroxisome | GO:0072662 | 22 | 0.711 | |
| establishment of protein localization to peroxisome | GO:0072663 | 22 | 0.711 | |
| single organism cellular localization | GO:1902580 | 375 | 0.646 | |
| signaling | GO:0023052 | 208 | 0.606 | |
| protein localization to organelle | GO:0033365 | 337 | 0.448 | |
| protein import into peroxisome matrix receptor recycling | GO:0016562 | 5 | 0.396 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.244 | |
| cell communication | GO:0007154 | 345 | 0.201 | |
| single organism membrane organization | GO:0044802 | 275 | 0.200 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.196 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.186 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.175 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 265 | 0.168 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.164 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.163 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 262 | 0.148 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.146 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.136 | |
| organelle localization | GO:0051640 | 128 | 0.136 | |
| atp metabolic process | GO:0046034 | 251 | 0.130 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.128 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.124 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.120 | |
| anion transport | GO:0006820 | 145 | 0.118 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.115 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.114 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.114 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.113 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.107 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.105 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.105 | |
| single organism catabolic process | GO:0044712 | 619 | 0.104 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.103 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.101 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.100 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.097 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.095 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.094 | |
| signal transduction | GO:0007165 | 208 | 0.094 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 267 | 0.091 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.090 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.087 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.085 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.083 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.081 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.081 | |
| glycerolipid metabolic process | GO:0046486 | 108 | 0.080 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.080 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.079 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.078 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.077 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.076 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 262 | 0.075 | |
| peroxisome degradation | GO:0030242 | 22 | 0.072 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.063 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.061 | |
| proteolysis | GO:0006508 | 268 | 0.060 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.060 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.059 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.058 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.058 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 224 | 0.056 | |
| single organism signaling | GO:0044700 | 208 | 0.054 | |
| ion transport | GO:0006811 | 274 | 0.054 | |
| fungal type cell wall organization or biogenesis | GO:0071852 | 169 | 0.053 | |
| alcohol metabolic process | GO:0006066 | 112 | 0.052 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.051 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.048 | |
| cell wall organization or biogenesis | GO:0071554 | 190 | 0.048 | |
| protein complex assembly | GO:0006461 | 302 | 0.048 | |
| regulation of molecular function | GO:0065009 | 320 | 0.046 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.045 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.044 | |
| membrane organization | GO:0061024 | 276 | 0.044 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.042 | |
| sexual reproduction | GO:0019953 | 216 | 0.042 | |
| dna templated transcription elongation | GO:0006354 | 91 | 0.040 | |
| lipid metabolic process | GO:0006629 | 269 | 0.040 | |
| receptor metabolic process | GO:0043112 | 8 | 0.038 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.038 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.037 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.037 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.035 | |
| organic acid transport | GO:0015849 | 77 | 0.035 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.035 | |
| cytoskeleton dependent cytokinesis | GO:0061640 | 65 | 0.034 | |
| response to nutrient levels | GO:0031667 | 150 | 0.034 | |
| phospholipid biosynthetic process | GO:0008654 | 89 | 0.034 | |
| cell division | GO:0051301 | 205 | 0.034 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.033 | |
| sexual sporulation resulting in formation of a cellular spore | GO:0043935 | 113 | 0.031 | |
| regulation of cell communication | GO:0010646 | 124 | 0.031 | |
| organic anion transport | GO:0015711 | 114 | 0.031 | |
| fatty acid catabolic process | GO:0009062 | 17 | 0.030 | |
| cation transport | GO:0006812 | 166 | 0.030 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.030 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.030 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 38 | 0.028 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.028 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.027 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.027 | |
| mitotic cell cycle phase transition | GO:0044772 | 141 | 0.026 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.026 | |
| fungal type cell wall organization | GO:0031505 | 145 | 0.026 | |
| dephosphorylation | GO:0016311 | 127 | 0.026 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 81 | 0.026 | |
| autophagy | GO:0006914 | 106 | 0.026 | |
| reproductive process | GO:0022414 | 248 | 0.025 | |
| carboxylic acid catabolic process | GO:0046395 | 71 | 0.025 | |
| glycerophospholipid metabolic process | GO:0006650 | 98 | 0.025 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.024 | |
| single organism reproductive process | GO:0044702 | 159 | 0.024 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.024 | |
| monocarboxylic acid metabolic process | GO:0032787 | 122 | 0.024 | |
| lipid catabolic process | GO:0016042 | 33 | 0.024 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.024 | |
| regulation of transport | GO:0051049 | 85 | 0.023 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.023 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.023 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 181 | 0.023 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.022 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.022 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.022 | |
| alcohol biosynthetic process | GO:0046165 | 75 | 0.022 | |
| organic hydroxy compound biosynthetic process | GO:1901617 | 81 | 0.021 | |
| cellular homeostasis | GO:0019725 | 138 | 0.021 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 147 | 0.021 | |
| endocytosis | GO:0006897 | 90 | 0.020 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.019 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.019 | |
| regulation of intracellular signal transduction | GO:1902531 | 78 | 0.019 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.019 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.019 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.019 | |
| multi organism process | GO:0051704 | 233 | 0.019 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.018 | |
| cation transmembrane transport | GO:0098655 | 135 | 0.018 | |
| carbon catabolite regulation of transcription from rna polymerase ii promoter | GO:0000429 | 34 | 0.018 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.018 | |
| external encapsulating structure organization | GO:0045229 | 146 | 0.018 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.018 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.018 | |
| oxidation reduction process | GO:0055114 | 353 | 0.017 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.017 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.017 | |
| ion transmembrane transport | GO:0034220 | 200 | 0.017 | |
| response to drug | GO:0042493 | 41 | 0.017 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.017 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.017 | |
| glycerolipid biosynthetic process | GO:0045017 | 71 | 0.017 | |
| fatty acid beta oxidation | GO:0006635 | 12 | 0.016 | |
| regulation of dna templated transcription elongation | GO:0032784 | 44 | 0.016 | |
| carboxylic acid transport | GO:0046942 | 74 | 0.016 | |
| regulation of protein complex assembly | GO:0043254 | 77 | 0.016 | |
| mitochondrial genome maintenance | GO:0000002 | 40 | 0.016 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.016 | |
| protein targeting to membrane | GO:0006612 | 52 | 0.015 | |
| mitochondrion organization | GO:0007005 | 261 | 0.015 | |
| response to chemical | GO:0042221 | 390 | 0.015 | |
| small molecule catabolic process | GO:0044282 | 88 | 0.015 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 136 | 0.015 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.015 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.015 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.015 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.014 | |
| cellular response to abiotic stimulus | GO:0071214 | 62 | 0.014 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.014 | |
| lipid modification | GO:0030258 | 37 | 0.014 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.014 | |
| cellular component disassembly | GO:0022411 | 86 | 0.014 | |
| conjugation | GO:0000746 | 107 | 0.014 | |
| single organism developmental process | GO:0044767 | 258 | 0.014 | |
| positive regulation of fatty acid oxidation | GO:0046321 | 3 | 0.014 | |
| regulation of chromatin silencing at telomere | GO:0031938 | 27 | 0.013 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.013 | |
| cellular lipid catabolic process | GO:0044242 | 33 | 0.013 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.013 | |
| chromatin remodeling | GO:0006338 | 80 | 0.013 | |
| cellular response to oxidative stress | GO:0034599 | 94 | 0.013 | |
| nucleotide excision repair | GO:0006289 | 50 | 0.012 | |
| chromatin silencing at telomere | GO:0006348 | 84 | 0.012 | |
| homeostatic process | GO:0042592 | 227 | 0.012 | |
| positive regulation of apoptotic process | GO:0043065 | 3 | 0.012 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.012 | |
| organic hydroxy compound metabolic process | GO:1901615 | 125 | 0.012 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.012 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.012 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.012 | |
| cell wall biogenesis | GO:0042546 | 93 | 0.012 | |
| conjugation with cellular fusion | GO:0000747 | 106 | 0.012 | |
| multi organism cellular process | GO:0044764 | 120 | 0.012 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 109 | 0.012 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 147 | 0.012 | |
| positive regulation of lipid catabolic process | GO:0050996 | 4 | 0.011 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.011 | |
| positive regulation of transcription by oleic acid | GO:0061421 | 4 | 0.011 | |
| dna recombination | GO:0006310 | 172 | 0.011 | |
| dna repair | GO:0006281 | 236 | 0.011 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.011 | |
| response to uv | GO:0009411 | 4 | 0.011 | |
| regulation of response to stress | GO:0080134 | 57 | 0.011 | |
| lipid localization | GO:0010876 | 60 | 0.011 | |
| glycerophospholipid biosynthetic process | GO:0046474 | 68 | 0.011 | |
| response to oxidative stress | GO:0006979 | 99 | 0.011 | |
| late endosome to vacuole transport | GO:0045324 | 42 | 0.011 | |
| regulation of localization | GO:0032879 | 127 | 0.011 | |
| cellular response to starvation | GO:0009267 | 90 | 0.011 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.011 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.011 | |
| organophosphate biosynthetic process | GO:0090407 | 182 | 0.011 | |
| carbon catabolite activation of transcription from rna polymerase ii promoter | GO:0000436 | 22 | 0.011 | |
| protein lipidation | GO:0006497 | 40 | 0.010 | |
| protein import into peroxisome matrix docking | GO:0016560 | 5 | 0.010 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.010 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.010 | |
| regulation of cellular response to stress | GO:0080135 | 50 | 0.010 | |
| sexual sporulation | GO:0034293 | 113 | 0.010 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.010 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.010 | |
| regulation of fatty acid beta oxidation | GO:0031998 | 3 | 0.010 | |
| regulation of fatty acid oxidation | GO:0046320 | 3 | 0.010 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.010 | |