| rna modification | GO:0009451 | 99 | 0.604 | |
| pseudouridine synthesis | GO:0001522 | 13 | 0.582 | |
| single organism membrane organization | GO:0044802 | 275 | 0.223 | |
| mitochondrial transport | GO:0006839 | 76 | 0.197 | |
| single organism developmental process | GO:0044767 | 258 | 0.189 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.136 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.132 | |
| cell division | GO:0051301 | 205 | 0.128 | |
| developmental process | GO:0032502 | 261 | 0.120 | |
| rrna metabolic process | GO:0016072 | 244 | 0.119 | |
| protein transport | GO:0015031 | 345 | 0.111 | |
| mrna modification | GO:0016556 | 10 | 0.110 | |
| trna wobble base modification | GO:0002097 | 27 | 0.104 | |
| trna metabolic process | GO:0006399 | 151 | 0.102 | |
| ncrna processing | GO:0034470 | 330 | 0.100 | |
| membrane organization | GO:0061024 | 276 | 0.094 | |
| regulation of biological quality | GO:0065008 | 391 | 0.093 | |
| establishment of protein localization | GO:0045184 | 367 | 0.086 | |
| growth | GO:0040007 | 157 | 0.084 | |
| organelle fusion | GO:0048284 | 85 | 0.076 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.076 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.075 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.074 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.072 | |
| single organism catabolic process | GO:0044712 | 619 | 0.072 | |
| trna wobble uridine modification | GO:0002098 | 26 | 0.072 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.071 | |
| homeostatic process | GO:0042592 | 227 | 0.069 | |
| trna modification | GO:0006400 | 75 | 0.063 | |
| endocytosis | GO:0006897 | 90 | 0.060 | |
| cellular homeostasis | GO:0019725 | 138 | 0.060 | |
| reproductive process | GO:0022414 | 248 | 0.059 | |
| ribosomal small subunit biogenesis | GO:0042274 | 124 | 0.058 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.057 | |
| single organism cellular localization | GO:1902580 | 375 | 0.054 | |
| regulation of vesicle mediated transport | GO:0060627 | 39 | 0.053 | |
| intracellular protein transport | GO:0006886 | 319 | 0.052 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.049 | |
| cellular response to oxidative stress | GO:0034599 | 94 | 0.047 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.047 | |
| chromatin modification | GO:0016568 | 200 | 0.046 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.046 | |
| membrane fusion | GO:0061025 | 73 | 0.046 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.045 | |
| golgi vesicle transport | GO:0048193 | 188 | 0.045 | |
| er to golgi vesicle mediated transport | GO:0006888 | 86 | 0.045 | |
| mitochondrion organization | GO:0007005 | 261 | 0.044 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.042 | |
| response to chemical | GO:0042221 | 390 | 0.042 | |
| intracellular protein transmembrane transport | GO:0065002 | 80 | 0.041 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.040 | |
| multi organism process | GO:0051704 | 233 | 0.038 | |
| protein targeting to mitochondrion | GO:0006626 | 56 | 0.036 | |
| mrna metabolic process | GO:0016071 | 269 | 0.035 | |
| protein acylation | GO:0043543 | 66 | 0.035 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.034 | |
| chemical homeostasis | GO:0048878 | 137 | 0.034 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.033 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.033 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.033 | |
| protein localization to membrane | GO:0072657 | 102 | 0.033 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.033 | |
| endomembrane system organization | GO:0010256 | 74 | 0.033 | |
| snrna pseudouridine synthesis | GO:0031120 | 6 | 0.032 | |
| metal ion homeostasis | GO:0055065 | 79 | 0.032 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.031 | |
| nuclear division | GO:0000280 | 263 | 0.031 | |
| response to oxidative stress | GO:0006979 | 99 | 0.031 | |
| single organism reproductive process | GO:0044702 | 159 | 0.030 | |
| chromatin remodeling | GO:0006338 | 80 | 0.030 | |
| sexual reproduction | GO:0019953 | 216 | 0.029 | |
| lipid metabolic process | GO:0006629 | 269 | 0.029 | |
| glycoprotein biosynthetic process | GO:0009101 | 61 | 0.029 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.028 | |
| trna aminoacylation | GO:0043039 | 35 | 0.028 | |
| post golgi vesicle mediated transport | GO:0006892 | 72 | 0.028 | |
| cellular developmental process | GO:0048869 | 191 | 0.028 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.028 | |
| oligosaccharide metabolic process | GO:0009311 | 35 | 0.028 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.028 | |
| regulation of cell division | GO:0051302 | 113 | 0.028 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.027 | |
| protein processing | GO:0016485 | 64 | 0.027 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.027 | |
| ion homeostasis | GO:0050801 | 118 | 0.027 | |
| rna localization | GO:0006403 | 112 | 0.026 | |
| regulation of meiosis | GO:0040020 | 42 | 0.025 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.025 | |
| cellular iron ion homeostasis | GO:0006879 | 34 | 0.025 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.025 | |
| retrograde vesicle mediated transport golgi to er | GO:0006890 | 28 | 0.025 | |
| protein localization to endoplasmic reticulum | GO:0070972 | 47 | 0.025 | |
| regulation of translation | GO:0006417 | 89 | 0.024 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.024 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.024 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.024 | |
| regulation of mitosis | GO:0007088 | 65 | 0.024 | |
| protein maturation | GO:0051604 | 76 | 0.023 | |
| cellular amide metabolic process | GO:0043603 | 59 | 0.023 | |
| mitochondrial rna metabolic process | GO:0000959 | 24 | 0.023 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.023 | |
| negative regulation of cell cycle | GO:0045786 | 91 | 0.023 | |
| establishment of protein localization to membrane | GO:0090150 | 99 | 0.023 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.023 | |
| protein phosphorylation | GO:0006468 | 197 | 0.022 | |
| protein localization to organelle | GO:0033365 | 337 | 0.022 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.022 | |
| cellular transition metal ion homeostasis | GO:0046916 | 59 | 0.022 | |
| organelle localization | GO:0051640 | 128 | 0.022 | |
| rrna modification | GO:0000154 | 19 | 0.022 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.022 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.022 | |
| sporulation resulting in formation of a cellular spore | GO:0030435 | 129 | 0.022 | |
| regulation of dephosphorylation | GO:0035303 | 18 | 0.022 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.021 | |
| replicative cell aging | GO:0001302 | 46 | 0.021 | |
| rrna processing | GO:0006364 | 227 | 0.021 | |
| regulation of vesicle fusion | GO:0031338 | 10 | 0.021 | |
| regulation of nuclear division | GO:0051783 | 103 | 0.021 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.020 | |
| organic anion transport | GO:0015711 | 114 | 0.020 | |
| cellular component morphogenesis | GO:0032989 | 97 | 0.020 | |
| anatomical structure development | GO:0048856 | 160 | 0.020 | |
| translation | GO:0006412 | 230 | 0.020 | |
| positive regulation of secretion by cell | GO:1903532 | 2 | 0.019 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.019 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.019 | |
| vesicle docking | GO:0048278 | 16 | 0.019 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.019 | |
| maintenance of location | GO:0051235 | 66 | 0.019 | |
| secretion by cell | GO:0032940 | 50 | 0.019 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.018 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.018 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.018 | |
| regulation of molecular function | GO:0065009 | 320 | 0.018 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.018 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.018 | |
| dna conformation change | GO:0071103 | 98 | 0.018 | |
| vacuolar transport | GO:0007034 | 145 | 0.018 | |
| regulation of transport | GO:0051049 | 85 | 0.018 | |
| dephosphorylation | GO:0016311 | 127 | 0.018 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.017 | |
| histone modification | GO:0016570 | 119 | 0.017 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.017 | |
| cellular modified amino acid metabolic process | GO:0006575 | 51 | 0.017 | |
| sulfur compound biosynthetic process | GO:0044272 | 53 | 0.017 | |
| organelle fission | GO:0048285 | 272 | 0.017 | |
| plasma membrane organization | GO:0007009 | 21 | 0.017 | |
| dna repair | GO:0006281 | 236 | 0.017 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.017 | |
| hormone transport | GO:0009914 | 1 | 0.017 | |
| sporulation | GO:0043934 | 132 | 0.017 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.017 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.017 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.016 | |
| snrna modification | GO:0040031 | 6 | 0.016 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.016 | |
| organic acid biosynthetic process | GO:0016053 | 152 | 0.016 | |
| cation homeostasis | GO:0055080 | 105 | 0.016 | |
| histone acetylation | GO:0016573 | 51 | 0.016 | |
| actin filament based process | GO:0030029 | 104 | 0.016 | |
| growth of unicellular organism as a thread of attached cells | GO:0070783 | 105 | 0.016 | |
| organelle assembly | GO:0070925 | 118 | 0.016 | |
| positive regulation of secretion | GO:0051047 | 2 | 0.016 | |
| lipid modification | GO:0030258 | 37 | 0.016 | |
| endoplasmic reticulum organization | GO:0007029 | 30 | 0.016 | |
| protein catabolic process | GO:0030163 | 221 | 0.016 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.016 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.015 | |
| regulation of hormone levels | GO:0010817 | 1 | 0.015 | |
| protein complex assembly | GO:0006461 | 302 | 0.015 | |
| cellular component disassembly | GO:0022411 | 86 | 0.015 | |
| transition metal ion homeostasis | GO:0055076 | 59 | 0.015 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.015 | |
| mitotic nuclear division | GO:0007067 | 131 | 0.015 | |
| establishment of protein localization to endoplasmic reticulum | GO:0072599 | 40 | 0.015 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.015 | |
| trna processing | GO:0008033 | 101 | 0.015 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.014 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.014 | |
| macromolecule methylation | GO:0043414 | 85 | 0.014 | |
| chromatin organization | GO:0006325 | 242 | 0.014 | |
| sexual sporulation | GO:0034293 | 113 | 0.014 | |
| cell differentiation | GO:0030154 | 161 | 0.014 | |
| trna pseudouridine synthesis | GO:0031119 | 7 | 0.014 | |
| protein glycosylation | GO:0006486 | 57 | 0.014 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.014 | |
| regulation of cell communication | GO:0010646 | 124 | 0.014 | |
| protein acetylation | GO:0006473 | 59 | 0.014 | |
| golgi to plasma membrane transport | GO:0006893 | 33 | 0.014 | |
| anatomical structure homeostasis | GO:0060249 | 74 | 0.014 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.014 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.014 | |
| protein refolding | GO:0042026 | 16 | 0.013 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.013 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.013 | |
| cellular metal ion homeostasis | GO:0006875 | 78 | 0.013 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.013 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.013 | |
| organophosphate ester transport | GO:0015748 | 45 | 0.013 | |
| endosomal transport | GO:0016197 | 86 | 0.013 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.013 | |
| nucleosome organization | GO:0034728 | 63 | 0.013 | |
| response to reactive oxygen species | GO:0000302 | 22 | 0.013 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.013 | |
| negative regulation of cell cycle process | GO:0010948 | 86 | 0.013 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.013 | |
| cellular response to pheromone | GO:0071444 | 88 | 0.013 | |
| cell growth | GO:0016049 | 89 | 0.013 | |
| negative regulation of meiosis | GO:0045835 | 23 | 0.013 | |
| actin cytoskeleton organization | GO:0030036 | 100 | 0.013 | |
| response to calcium ion | GO:0051592 | 1 | 0.012 | |
| signal transduction | GO:0007165 | 208 | 0.012 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 181 | 0.012 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.012 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.012 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.012 | |
| cytoplasmic translation | GO:0002181 | 65 | 0.012 | |
| filamentous growth | GO:0030447 | 124 | 0.012 | |
| positive regulation of exocytosis | GO:0045921 | 2 | 0.012 | |
| maintenance of protein location in cell | GO:0032507 | 50 | 0.012 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.012 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 49 | 0.012 | |
| iron ion homeostasis | GO:0055072 | 34 | 0.012 | |
| single organism signaling | GO:0044700 | 208 | 0.012 | |
| positive regulation of purine nucleotide catabolic process | GO:0033123 | 97 | 0.012 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.012 | |
| negative regulation of nuclear division | GO:0051784 | 62 | 0.012 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.011 | |
| pyridine nucleotide metabolic process | GO:0019362 | 45 | 0.011 | |
| response to external stimulus | GO:0009605 | 158 | 0.011 | |
| cell aging | GO:0007569 | 70 | 0.011 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.011 | |
| phospholipid transport | GO:0015914 | 23 | 0.011 | |
| sexual sporulation resulting in formation of a cellular spore | GO:0043935 | 113 | 0.011 | |
| membrane docking | GO:0022406 | 22 | 0.011 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.011 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.011 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.011 | |
| regulation of metal ion transport | GO:0010959 | 2 | 0.011 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.011 | |
| positive regulation of hydrolase activity | GO:0051345 | 112 | 0.011 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.011 | |
| invasive filamentous growth | GO:0036267 | 65 | 0.011 | |
| microtubule based process | GO:0007017 | 117 | 0.011 | |
| glycerolipid metabolic process | GO:0046486 | 108 | 0.011 | |
| mrna catabolic process | GO:0006402 | 93 | 0.011 | |
| telomere maintenance | GO:0000723 | 74 | 0.011 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.011 | |
| oxidation reduction process | GO:0055114 | 353 | 0.011 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.011 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 49 | 0.011 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.010 | |
| conjugation with cellular fusion | GO:0000747 | 106 | 0.010 | |
| mrna pseudouridine synthesis | GO:1990481 | 6 | 0.010 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.010 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.010 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.010 | |
| polysaccharide metabolic process | GO:0005976 | 60 | 0.010 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.010 | |
| regulation of signaling | GO:0023051 | 119 | 0.010 | |
| regulation of cellular localization | GO:0060341 | 50 | 0.010 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.010 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.010 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.010 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.010 | |
