| axonemal dynein complex assembly | GO:0070286 | 5 | 0.366 | |
| signal transduction | GO:0007165 | 455 | 0.307 | |
| cilium morphogenesis | GO:0060271 | 85 | 0.269 | |
| cell surface receptor signaling pathway | GO:0007166 | 325 | 0.185 | |
| cilium organization | GO:0044782 | 71 | 0.178 | |
| specification of symmetry | GO:0009799 | 204 | 0.102 | |
| epithelial cilium movement involved in determination of left right asymmetry | GO:0060287 | 8 | 0.097 | |
| homeostatic process | GO:0042592 | 142 | 0.084 | |
| tube closure | GO:0060606 | 1 | 0.080 | |
| cell part morphogenesis | GO:0032990 | 246 | 0.076 | |
| cell projection morphogenesis | GO:0048858 | 244 | 0.073 | |
| chordate embryonic development | GO:0043009 | 271 | 0.069 | |
| regulation of microtubule based movement | GO:0060632 | 3 | 0.068 | |
| photoreceptor cell differentiation | GO:0046530 | 55 | 0.068 | |
| cilium movement | GO:0003341 | 26 | 0.067 | |
| cell morphogenesis | GO:0000902 | 289 | 0.065 | |
| neuron differentiation | GO:0030182 | 353 | 0.060 | |
| regulation of neural retina development | GO:0061074 | 2 | 0.056 | |
| regionalization | GO:0003002 | 274 | 0.055 | |
| cellular component assembly | GO:0022607 | 170 | 0.053 | |
| larval development | GO:0002164 | 2 | 0.049 | |
| nitrogen compound metabolic process | GO:0006807 | 319 | 0.046 | |
| synaptic target recognition | GO:0008039 | 1 | 0.044 | |
| determination of left right symmetry | GO:0007368 | 179 | 0.042 | |
| regulation of photoreceptor cell differentiation | GO:0046532 | 2 | 0.042 | |
| response to organic substance | GO:0010033 | 153 | 0.040 | |
| negative regulation of signal transduction | GO:0009968 | 94 | 0.038 | |
| regulation of signaling | GO:0023051 | 235 | 0.036 | |
| sensory organ development | GO:0007423 | 393 | 0.035 | |
| primary neural tube formation | GO:0014020 | 1 | 0.035 | |
| cilium assembly | GO:0042384 | 58 | 0.035 | |
| multi organism process | GO:0051704 | 134 | 0.035 | |
| brain morphogenesis | GO:0048854 | 18 | 0.035 | |
| gland development | GO:0048732 | 143 | 0.033 | |
| cellular nitrogen compound biosynthetic process | GO:0044271 | 218 | 0.033 | |
| regulation of inner ear receptor cell differentiation | GO:2000980 | 1 | 0.032 | |
| regulation of multicellular organism growth | GO:0040014 | 4 | 0.030 | |
| regulation of cellular metabolic process | GO:0031323 | 320 | 0.030 | |
| cellular biosynthetic process | GO:0044249 | 286 | 0.030 | |
| cellular component morphogenesis | GO:0032989 | 336 | 0.028 | |
| regulation of retina development in camera type eye | GO:1902866 | 2 | 0.028 | |
| organic substance biosynthetic process | GO:1901576 | 289 | 0.028 | |
| cartilage development | GO:0051216 | 96 | 0.026 | |
| generation of neurons | GO:0048699 | 385 | 0.026 | |
| response to chemical | GO:0042221 | 320 | 0.025 | |
| embryonic organ development | GO:0048568 | 381 | 0.025 | |
| determination of bilateral symmetry | GO:0009855 | 204 | 0.024 | |
| multicellular organismal reproductive process | GO:0048609 | 35 | 0.023 | |
| behavior | GO:0007610 | 74 | 0.023 | |
| cellular component movement | GO:0006928 | 335 | 0.023 | |
| convergent extension | GO:0060026 | 118 | 0.023 | |
| macromolecule biosynthetic process | GO:0009059 | 227 | 0.023 | |
| rostrocaudal neural tube patterning | GO:0021903 | 29 | 0.022 | |
| epithelial tube morphogenesis | GO:0060562 | 148 | 0.022 | |
| response to stress | GO:0006950 | 263 | 0.022 | |
| rna metabolic process | GO:0016070 | 219 | 0.021 | |
| guanosine containing compound catabolic process | GO:1901069 | 2 | 0.021 | |
| positive regulation of apoptotic signaling pathway | GO:2001235 | 1 | 0.021 | |
| melanin metabolic process | GO:0006582 | 2 | 0.021 | |
| rna biosynthetic process | GO:0032774 | 181 | 0.020 | |
| positive regulation of catabolic process | GO:0009896 | 4 | 0.020 | |
| regulation of rna biosynthetic process | GO:2001141 | 213 | 0.020 | |
| anterior posterior pattern specification | GO:0009952 | 152 | 0.020 | |
| hindbrain formation | GO:0021576 | 3 | 0.020 | |
| microtubule based movement | GO:0007018 | 33 | 0.020 | |
| epithelial cilium movement | GO:0003351 | 15 | 0.020 | |
| regulation of cell development | GO:0060284 | 100 | 0.020 | |
| regulation of fatty acid metabolic process | GO:0019217 | 1 | 0.019 | |
| regulation of multicellular organismal process | GO:0051239 | 277 | 0.018 | |
| gene expression | GO:0010467 | 252 | 0.018 | |
| neurological system process | GO:0050877 | 62 | 0.017 | |
| aromatic compound biosynthetic process | GO:0019438 | 217 | 0.017 | |
| determination of heart left right asymmetry | GO:0061371 | 117 | 0.017 | |
| neural tube development | GO:0021915 | 62 | 0.017 | |
| heart looping | GO:0001947 | 94 | 0.017 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 271 | 0.017 | |
| cellular macromolecule metabolic process | GO:0044260 | 391 | 0.017 | |
| cellular response to retinoic acid | GO:0071300 | 1 | 0.017 | |
| muscle cell fate determination | GO:0007521 | 1 | 0.017 | |
| negative regulation of biological process | GO:0048519 | 304 | 0.017 | |
| enzyme linked receptor protein signaling pathway | GO:0007167 | 106 | 0.017 | |
| regulation of cellular biosynthetic process | GO:0031326 | 245 | 0.017 | |
| brain development | GO:0007420 | 293 | 0.017 | |
| regulation of primary metabolic process | GO:0080090 | 311 | 0.017 | |
| cardiac cell fate commitment | GO:0060911 | 1 | 0.016 | |
| regulation of neurogenesis | GO:0050767 | 87 | 0.016 | |
| protein metabolic process | GO:0019538 | 183 | 0.016 | |
| rhombomere 4 morphogenesis | GO:0021661 | 5 | 0.016 | |
| heterocycle metabolic process | GO:0046483 | 290 | 0.016 | |
| regulation of neuron differentiation | GO:0045664 | 56 | 0.016 | |
| neural keel formation | GO:0014025 | 1 | 0.015 | |
| gall bladder development | GO:0061010 | 1 | 0.015 | |
| regulation of tissue remodeling | GO:0034103 | 2 | 0.015 | |
| regulation of biosynthetic process | GO:0009889 | 250 | 0.015 | |
| aging | GO:0007568 | 2 | 0.015 | |
| epithelial tube formation | GO:0072175 | 19 | 0.015 | |
| heart development | GO:0007507 | 313 | 0.015 | |
| cellular response to organic substance | GO:0071310 | 105 | 0.015 | |
| positive regulation of stem cell proliferation | GO:2000648 | 1 | 0.015 | |
| lipid storage | GO:0019915 | 1 | 0.015 | |
| cellular nitrogen compound metabolic process | GO:0034641 | 290 | 0.015 | |
| central nervous system development | GO:0007417 | 387 | 0.014 | |
| regulation of cytokine production | GO:0001817 | 3 | 0.014 | |
| lymphangiogenesis | GO:0001946 | 25 | 0.014 | |
| regulation of cellular component organization | GO:0051128 | 86 | 0.014 | |
| response to nicotine | GO:0035094 | 2 | 0.014 | |
| pronephros development | GO:0048793 | 69 | 0.014 | |
| multicellular organism growth | GO:0035264 | 4 | 0.014 | |
| embryonic organ morphogenesis | GO:0048562 | 274 | 0.013 | |
| neural crest cell differentiation | GO:0014033 | 72 | 0.013 | |
| pharyngeal muscle development | GO:0043282 | 4 | 0.013 | |
| digestive system development | GO:0055123 | 289 | 0.013 | |
| neural tube patterning | GO:0021532 | 33 | 0.013 | |
| sensory organ morphogenesis | GO:0090596 | 200 | 0.013 | |
| mesoderm development | GO:0007498 | 88 | 0.013 | |
| regulation of nucleobase containing compound metabolic process | GO:0019219 | 250 | 0.013 | |
| cytokinesis | GO:0000910 | 3 | 0.013 | |
| nucleobase containing compound biosynthetic process | GO:0034654 | 205 | 0.013 | |
| tube morphogenesis | GO:0035239 | 349 | 0.013 | |
| photoreceptor cell development | GO:0042461 | 40 | 0.012 | |
| convergent extension involved in gastrulation | GO:0060027 | 71 | 0.012 | |
| meiotic nuclear division | GO:0007126 | 4 | 0.012 | |
| maintenance of location | GO:0051235 | 4 | 0.012 | |
| developmental growth | GO:0048589 | 166 | 0.012 | |
| regulation of response to stimulus | GO:0048583 | 269 | 0.012 | |
| negative regulation of response to stimulus | GO:0048585 | 104 | 0.012 | |
| positive regulation of cell cycle | GO:0045787 | 3 | 0.012 | |
| central nervous system projection neuron axonogenesis | GO:0021952 | 15 | 0.012 | |
| regulation of cell matrix adhesion | GO:0001952 | 1 | 0.011 | |
| intracellular estrogen receptor signaling pathway | GO:0030520 | 3 | 0.011 | |
| embryonic heart tube development | GO:0035050 | 133 | 0.011 | |
| regulation of gtp catabolic process | GO:0033124 | 2 | 0.011 | |
| gastrulation | GO:0007369 | 208 | 0.011 | |
| ear morphogenesis | GO:0042471 | 64 | 0.011 | |
| epithelium regeneration | GO:1990399 | 14 | 0.011 | |
| localization of cell | GO:0051674 | 244 | 0.011 | |
| organic cyclic compound biosynthetic process | GO:1901362 | 223 | 0.011 | |
| segmentation | GO:0035282 | 97 | 0.011 | |
| regulation of developmental process | GO:0050793 | 247 | 0.011 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 59 | 0.011 | |
| regulation of cell differentiation | GO:0045595 | 142 | 0.011 | |
| smoothened signaling pathway | GO:0007224 | 30 | 0.011 | |
| nephron tubule morphogenesis | GO:0072078 | 1 | 0.011 | |
| female gonad development | GO:0008585 | 4 | 0.011 | |
| aorta morphogenesis | GO:0035909 | 3 | 0.010 | |
| vestibular receptor cell development | GO:0060118 | 3 | 0.010 | |
| nucleic acid templated transcription | GO:0097659 | 181 | 0.010 | |
| regulation of cytokine mediated signaling pathway | GO:0001959 | 3 | 0.010 | |
| negative regulation of protein complex assembly | GO:0031333 | 1 | 0.010 | |
| synaptic growth at neuromuscular junction | GO:0051124 | 2 | 0.010 | |
| regulation of response to cytokine stimulus | GO:0060759 | 3 | 0.010 | |
