| chordate embryonic development | GO:0043009 | 271 | 0.201 | |
| embryonic organ development | GO:0048568 | 381 | 0.180 | |
| embryonic organ morphogenesis | GO:0048562 | 274 | 0.144 | |
| cellular macromolecule metabolic process | GO:0044260 | 391 | 0.107 | |
| embryonic skeletal system development | GO:0048706 | 97 | 0.092 | |
| skeletal system development | GO:0001501 | 181 | 0.084 | |
| regulation of multicellular organism growth | GO:0040014 | 4 | 0.082 | |
| organic cyclic compound metabolic process | GO:1901360 | 301 | 0.082 | |
| sensory organ morphogenesis | GO:0090596 | 200 | 0.070 | |
| macromolecule biosynthetic process | GO:0009059 | 227 | 0.068 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 271 | 0.068 | |
| larval development | GO:0002164 | 2 | 0.066 | |
| skeletal system morphogenesis | GO:0048705 | 102 | 0.057 | |
| cellular biosynthetic process | GO:0044249 | 286 | 0.054 | |
| nucleobase containing compound biosynthetic process | GO:0034654 | 205 | 0.048 | |
| heterocycle metabolic process | GO:0046483 | 290 | 0.048 | |
| negative regulation of cellular process | GO:0048523 | 283 | 0.046 | |
| regulation of cell communication | GO:0010646 | 232 | 0.046 | |
| nitrogen compound metabolic process | GO:0006807 | 319 | 0.042 | |
| embryonic cranial skeleton morphogenesis | GO:0048701 | 90 | 0.042 | |
| regulation of gene expression | GO:0010468 | 265 | 0.041 | |
| chondrocyte development | GO:0002063 | 4 | 0.038 | |
| otic vesicle development | GO:0071599 | 42 | 0.038 | |
| sensory organ development | GO:0007423 | 393 | 0.038 | |
| cartilage condensation | GO:0001502 | 3 | 0.037 | |
| embryonic skeletal system morphogenesis | GO:0048704 | 93 | 0.036 | |
| negative regulation of biological process | GO:0048519 | 304 | 0.036 | |
| establishment of protein localization to organelle | GO:0072594 | 4 | 0.035 | |
| cell migration | GO:0016477 | 237 | 0.034 | |
| growth | GO:0040007 | 174 | 0.033 | |
| trigeminal nerve development | GO:0021559 | 3 | 0.032 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 114 | 0.031 | |
| cartilage development | GO:0051216 | 96 | 0.029 | |
| adult behavior | GO:0030534 | 2 | 0.029 | |
| regulation of response to stimulus | GO:0048583 | 269 | 0.028 | |
| organic acid metabolic process | GO:0006082 | 31 | 0.028 | |
| glycoprotein metabolic process | GO:0009100 | 23 | 0.027 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 4 | 0.027 | |
| response to abiotic stimulus | GO:0009628 | 122 | 0.027 | |
| aging | GO:0007568 | 2 | 0.026 | |
| regulation of developmental process | GO:0050793 | 247 | 0.026 | |
| regulation of reactive oxygen species metabolic process | GO:2000377 | 2 | 0.026 | |
| protein import | GO:0017038 | 3 | 0.025 | |
| appendage development | GO:0048736 | 80 | 0.025 | |
| regulation of cellular biosynthetic process | GO:0031326 | 245 | 0.025 | |
| inner ear morphogenesis | GO:0042472 | 63 | 0.025 | |
| ear morphogenesis | GO:0042471 | 64 | 0.024 | |
| negative regulation of signal transduction | GO:0009968 | 94 | 0.024 | |
| positive regulation of transport | GO:0051050 | 2 | 0.024 | |
| axis elongation | GO:0003401 | 31 | 0.023 | |
| positive regulation of cellular catabolic process | GO:0031331 | 3 | 0.023 | |
| regulation of signal transduction | GO:0009966 | 225 | 0.023 | |
| extracellular structure organization | GO:0043062 | 27 | 0.023 | |
| embryonic viscerocranium morphogenesis | GO:0048703 | 52 | 0.023 | |
| cellular macromolecule biosynthetic process | GO:0034645 | 224 | 0.023 | |
| regulation of multicellular organismal process | GO:0051239 | 277 | 0.023 | |
| cellular nitrogen compound metabolic process | GO:0034641 | 290 | 0.022 | |
| regulation of binding | GO:0051098 | 3 | 0.022 | |
| regulation of nucleobase containing compound metabolic process | GO:0019219 | 250 | 0.022 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 80 | 0.022 | |
| negative regulation of cell communication | GO:0010648 | 96 | 0.022 | |
| cellular nitrogen compound biosynthetic process | GO:0044271 | 218 | 0.022 | |
| neural crest formation | GO:0014029 | 14 | 0.021 | |
| response to topologically incorrect protein | GO:0035966 | 2 | 0.021 | |
| regulation of signaling | GO:0023051 | 235 | 0.021 | |
| response to carbohydrate | GO:0009743 | 3 | 0.021 | |
| endochondral bone growth | GO:0003416 | 2 | 0.020 | |
| regulation of biosynthetic process | GO:0009889 | 250 | 0.020 | |
| regulation of cytoplasmic transport | GO:1903649 | 4 | 0.020 | |
| organic substance biosynthetic process | GO:1901576 | 289 | 0.020 | |
| regulation of blood pressure | GO:0008217 | 1 | 0.020 | |
| meiotic cell cycle process | GO:1903046 | 3 | 0.020 | |
| negative regulation of signaling | GO:0023057 | 96 | 0.020 | |
| multicellular organism growth | GO:0035264 | 4 | 0.019 | |
| nucleobase containing compound metabolic process | GO:0006139 | 274 | 0.019 | |
| regulation of metal ion transport | GO:0010959 | 4 | 0.019 | |
| collagen fibril organization | GO:0030199 | 1 | 0.019 | |
| regulation of inflammatory response | GO:0050727 | 2 | 0.019 | |
| nuclear transport | GO:0051169 | 4 | 0.019 | |
| regulation of protein catabolic process | GO:0042176 | 1 | 0.019 | |
| cell surface receptor signaling pathway | GO:0007166 | 325 | 0.019 | |
| growth plate cartilage development | GO:0003417 | 2 | 0.019 | |
| inner ear development | GO:0048839 | 126 | 0.019 | |
| regulation of rna metabolic process | GO:0051252 | 224 | 0.018 | |
| regulation of cell shape | GO:0008360 | 1 | 0.018 | |
| tissue regeneration | GO:0042246 | 74 | 0.018 | |
| regulation of macromolecule biosynthetic process | GO:0010556 | 225 | 0.018 | |
| cell motility | GO:0048870 | 244 | 0.018 | |
| modification dependent protein catabolic process | GO:0019941 | 3 | 0.017 | |
| negative regulation of dna metabolic process | GO:0051053 | 4 | 0.017 | |
| monocarboxylic acid catabolic process | GO:0072329 | 3 | 0.017 | |
| regulation of cellular metabolic process | GO:0031323 | 320 | 0.017 | |
| glycosaminoglycan metabolic process | GO:0030203 | 9 | 0.017 | |
| muscle structure development | GO:0061061 | 196 | 0.017 | |
| developmental growth involved in morphogenesis | GO:0060560 | 86 | 0.017 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 4 | 0.017 | |
| tissue remodeling | GO:0048771 | 4 | 0.017 | |
| regulation of chondrocyte differentiation | GO:0032330 | 1 | 0.017 | |
| connective tissue development | GO:0061448 | 99 | 0.017 | |
| nucleic acid templated transcription | GO:0097659 | 181 | 0.017 | |
| oxoacid metabolic process | GO:0043436 | 31 | 0.016 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 3 | 0.016 | |
| biosynthetic process | GO:0009058 | 294 | 0.016 | |
| regulation of metabolic process | GO:0019222 | 359 | 0.016 | |
| extracellular matrix constituent secretion | GO:0070278 | 3 | 0.016 | |
| cellular component morphogenesis | GO:0032989 | 336 | 0.016 | |
| response to organic substance | GO:0010033 | 153 | 0.016 | |
| carbohydrate derivative metabolic process | GO:1901135 | 61 | 0.016 | |
| regulation of protein modification by small protein conjugation or removal | GO:1903320 | 3 | 0.016 | |
| fin morphogenesis | GO:0033334 | 53 | 0.015 | |
| mitotic dna integrity checkpoint | GO:0044774 | 4 | 0.015 | |
| single organism nuclear import | GO:1902593 | 3 | 0.015 | |
| cell aggregation | GO:0098743 | 3 | 0.015 | |
| development of primary female sexual characteristics | GO:0046545 | 4 | 0.015 | |
| odontogenesis of dentin containing tooth | GO:0042475 | 1 | 0.015 | |
| cellular component movement | GO:0006928 | 335 | 0.015 | |
| regulation of rna biosynthetic process | GO:2001141 | 213 | 0.015 | |
| regulation of muscle contraction | GO:0006937 | 3 | 0.015 | |
| developmental growth | GO:0048589 | 166 | 0.015 | |
| small molecule catabolic process | GO:0044282 | 3 | 0.015 | |
| establishment of localization | GO:0051234 | 244 | 0.014 | |
| signal transduction | GO:0007165 | 455 | 0.014 | |
| organic cyclic compound biosynthetic process | GO:1901362 | 223 | 0.014 | |
| regulation of protein targeting | GO:1903533 | 2 | 0.014 | |
| atp catabolic process | GO:0006200 | 4 | 0.014 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 59 | 0.014 | |
| pectoral fin development | GO:0033339 | 50 | 0.014 | |
| regulation of cellular macromolecule biosynthetic process | GO:2000112 | 222 | 0.014 | |
| angiogenesis | GO:0001525 | 158 | 0.014 | |
| regulation of cellular response to growth factor stimulus | GO:0090287 | 35 | 0.014 | |
| small molecule metabolic process | GO:0044281 | 77 | 0.014 | |
| nuclear import | GO:0051170 | 3 | 0.014 | |
| nitric oxide metabolic process | GO:0046209 | 2 | 0.013 | |
| protein targeting to nucleus | GO:0044744 | 3 | 0.013 | |
| response to external stimulus | GO:0009605 | 264 | 0.013 | |
| transcription dna templated | GO:0006351 | 181 | 0.013 | |
| transport | GO:0006810 | 220 | 0.013 | |
| cellular aromatic compound metabolic process | GO:0006725 | 295 | 0.013 | |
| proteoglycan metabolic process | GO:0006029 | 14 | 0.013 | |
| protein polymerization | GO:0051258 | 4 | 0.013 | |
| nucleocytoplasmic transport | GO:0006913 | 4 | 0.013 | |
| regulation of nucleocytoplasmic transport | GO:0046822 | 2 | 0.013 | |
| digestive tract morphogenesis | GO:0048546 | 231 | 0.013 | |
| rna biosynthetic process | GO:0032774 | 181 | 0.013 | |
| anterior posterior pattern specification | GO:0009952 | 152 | 0.013 | |
| cellular response to radiation | GO:0071478 | 4 | 0.013 | |
| regulation of calcium ion transport | GO:0051924 | 2 | 0.013 | |
| morphogenesis of an epithelium | GO:0002009 | 333 | 0.013 | |
| organism emergence from protective structure | GO:0071684 | 4 | 0.013 | |
| response to uv | GO:0009411 | 3 | 0.013 | |
| activation of mapk activity | GO:0000187 | 3 | 0.012 | |
| regulation of sequestering of calcium ion | GO:0051282 | 4 | 0.012 | |
| meiotic chromosome segregation | GO:0045132 | 3 | 0.012 | |
| positive regulation of cell activation | GO:0050867 | 1 | 0.012 | |
| regulation of cytokine production | GO:0001817 | 3 | 0.012 | |
| cellular component disassembly | GO:0022411 | 1 | 0.012 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 3 | 0.012 | |
| nucleic acid metabolic process | GO:0090304 | 244 | 0.012 | |
| detection of mechanical stimulus involved in sensory perception of sound | GO:0050910 | 3 | 0.012 | |
| mitotic cytokinesis | GO:0000281 | 3 | 0.012 | |
| circulatory system process | GO:0003013 | 87 | 0.012 | |
| regulation of purine nucleotide catabolic process | GO:0033121 | 2 | 0.012 | |
| positive regulation of blood circulation | GO:1903524 | 2 | 0.012 | |
| mitotic g2 m transition checkpoint | GO:0044818 | 3 | 0.012 | |
| sister chromatid cohesion | GO:0007062 | 2 | 0.012 | |
| reactive oxygen species biosynthetic process | GO:1903409 | 1 | 0.012 | |
| negative regulation of dna replication | GO:0008156 | 2 | 0.012 | |
| fin development | GO:0033333 | 77 | 0.012 | |
| negative regulation of metabolic process | GO:0009892 | 86 | 0.012 | |
| protein import into nucleus | GO:0006606 | 3 | 0.012 | |
| cellular response to retinoic acid | GO:0071300 | 1 | 0.012 | |
| chemosensory behavior | GO:0007635 | 1 | 0.011 | |
| regulation of primary metabolic process | GO:0080090 | 311 | 0.011 | |
| sequestering of metal ion | GO:0051238 | 3 | 0.011 | |
| regulation of protein ubiquitination | GO:0031396 | 3 | 0.011 | |
| heterocycle biosynthetic process | GO:0018130 | 215 | 0.011 | |
| heart contraction | GO:0060047 | 71 | 0.011 | |
| somitogenesis | GO:0001756 | 87 | 0.011 | |
| regulation of macromolecule metabolic process | GO:0060255 | 317 | 0.011 | |
| ear development | GO:0043583 | 127 | 0.011 | |
| system process | GO:0003008 | 185 | 0.011 | |
| regulation of protein localization to nucleus | GO:1900180 | 2 | 0.011 | |
| regionalization | GO:0003002 | 274 | 0.011 | |
| fatty acid biosynthetic process | GO:0006633 | 4 | 0.011 | |
| sequestering of calcium ion | GO:0051208 | 3 | 0.011 | |
| carboxylic acid metabolic process | GO:0019752 | 22 | 0.011 | |
| collagen biosynthetic process | GO:0032964 | 2 | 0.011 | |
| ameboidal type cell migration | GO:0001667 | 143 | 0.011 | |
| regulation of dna replication | GO:0006275 | 3 | 0.011 | |
| cellular response to nutrient levels | GO:0031669 | 2 | 0.011 | |
| regulation of nitrogen compound metabolic process | GO:0051171 | 251 | 0.011 | |
| extracellular matrix organization | GO:0030198 | 27 | 0.010 | |
| regulation of multicellular organismal development | GO:2000026 | 223 | 0.010 | |
| segment polarity determination | GO:0007367 | 1 | 0.010 | |
| transmembrane receptor protein serine threonine kinase signaling pathway | GO:0007178 | 68 | 0.010 | |
| positive regulation of cytosolic calcium ion concentration | GO:0007204 | 4 | 0.010 | |
| neuron differentiation | GO:0030182 | 353 | 0.010 | |
| negative regulation of cytokine production | GO:0001818 | 1 | 0.010 | |
| muscle system process | GO:0003012 | 20 | 0.010 | |
| negative regulation of transforming growth factor beta receptor signaling pathway | GO:0030512 | 3 | 0.010 | |
| regulation of filopodium assembly | GO:0051489 | 2 | 0.010 | |
| locomotion | GO:0040011 | 313 | 0.010 | |
