Danio rerio

75 known processes

mib2

mind bomb 2

mib2 biological process predictions


Filter by process size:
Biological processGO term IDProcess sizeProbabilityFunc Analog Org
embryonic organ developmentGO:00485683810.353
regulation of biosynthetic processGO:00098892500.280
regulation of cellular metabolic processGO:00313233200.257
blood vessel developmentGO:00015682460.253
regulation of nucleobase containing compound metabolic processGO:00192192500.246
signal transductionGO:00071654550.233
vasculature developmentGO:00019442780.220
cellular aromatic compound metabolic processGO:00067252950.200
blood vessel morphogenesisGO:00485142160.190
dorsal ventral pattern formationGO:00099531250.184
determination of left right symmetryGO:00073681790.182
tube morphogenesisGO:00352393490.179
regulation of nitrogen compound metabolic processGO:00511712510.163
cellular biosynthetic processGO:00442492860.162
embryonic organ morphogenesisGO:00485622740.160
regulation of primary metabolic processGO:00800903110.153
cell surface receptor signaling pathwayGO:00071663250.153
regulation of rna metabolic processGO:00512522240.153
regulation of transcription from rna polymerase ii promoterGO:00063571140.152
angiogenesisGO:00015251580.150
sensory organ developmentGO:00074233930.149
negative regulation of biological processGO:00485193040.147
negative regulation of cellular processGO:00485232830.144
cellular component morphogenesisGO:00329893360.143
regionalizationGO:00030022740.142
regulation of multicellular organismal developmentGO:20000262230.140
rna biosynthetic processGO:00327741810.138
cellular nitrogen compound biosynthetic processGO:00442712180.137
regulation of cellular macromolecule biosynthetic processGO:20001122220.136
chordate embryonic developmentGO:00430092710.135
mesenchyme developmentGO:00604851270.131
cellular nitrogen compound metabolic processGO:00346412900.131
positive regulation of cellular processGO:00485222010.127
stem cell developmentGO:0048864820.121
morphogenesis of an epitheliumGO:00020093330.120
mesoderm developmentGO:0007498880.115
locomotionGO:00400113130.114
regulation of macromolecule biosynthetic processGO:00105562250.112
gene expressionGO:00104672520.108
organic cyclic compound biosynthetic processGO:19013622230.108
positive regulation of notch signaling pathwayGO:004574730.106
biosynthetic processGO:00090582940.106
nitrogen compound metabolic processGO:00068073190.104
gastrulationGO:00073692080.104
ameboidal type cell migrationGO:00016671430.103
transcription dna templatedGO:00063511810.103
appendage developmentGO:0048736800.101
nucleic acid templated transcriptionGO:00976591810.101
heart developmentGO:00075073130.100
stem cell differentiationGO:00488631170.099
heterocycle biosynthetic processGO:00181302150.097
regulation of nucleic acid templated transcriptionGO:19035062130.097
regulation of transcription dna templatedGO:00063552130.096
macromolecule biosynthetic processGO:00090592270.096
cellular macromolecule biosynthetic processGO:00346452240.096
regulation of signalingGO:00230512350.094
digestive tract developmentGO:00485652650.090
organic cyclic compound metabolic processGO:19013603010.088
appendage morphogenesisGO:0035107560.088
cell morphogenesis involved in differentiationGO:00009041950.085
cellular macromolecule metabolic processGO:00442603910.083
bmp signaling pathwayGO:0030509520.082
organic substance biosynthetic processGO:19015762890.082
transmembrane receptor protein serine threonine kinase signaling pathwayGO:0007178680.081
segmentationGO:0035282970.078
nucleobase containing compound metabolic processGO:00061392740.078
digestive system developmentGO:00551232890.078
determination of bilateral symmetryGO:00098552040.077
regulation of bmp signaling pathwayGO:0030510390.077
neural crest cell migrationGO:0001755420.075
cell morphogenesisGO:00009022890.075
cell fate specificationGO:0001708680.074
epithelial cell differentiationGO:00308551160.073
mesenchymal cell developmentGO:0014031780.072
neural crest cell differentiationGO:0014033720.072
nucleic acid metabolic processGO:00903042440.071
specification of symmetryGO:00097992040.071
tissue remodelingGO:004877140.071
cellular component movementGO:00069283350.070
regulation of gene expressionGO:00104682650.070
regulation of multicellular organismal processGO:00512392770.070
sprouting angiogenesisGO:0002040530.069
positive regulation of metabolic processGO:00098931080.065
i kappab kinase nf kappab signalingGO:000724940.065
transcription from rna polymerase ii promoterGO:0006366800.064
heart valve formationGO:000318840.064
nucleobase containing compound biosynthetic processGO:00346542050.064
immune system processGO:00023762410.063
regulation of developmental processGO:00507932470.062
forebrain developmentGO:0030900960.062
regulation of stem cell differentiationGO:200073640.062
negative regulation of metabolic processGO:0009892860.062
regulation of signal transductionGO:00099662250.061
sensory organ morphogenesisGO:00905962000.060
stem cell maintenanceGO:001982740.060
positive regulation of cell cycleGO:004578730.060
regulation of rna biosynthetic processGO:20011412130.059
central nervous system developmentGO:00074173870.058
regulation of macromolecule metabolic processGO:00602553170.057
inner ear developmentGO:00488391260.057
phagocytosisGO:000690930.056
larval developmentGO:000216420.056
epithelial tube morphogenesisGO:00605621480.055
brain developmentGO:00074202930.055
pectoral fin developmentGO:0033339500.054
cell fate commitmentGO:0045165990.054
embryo development ending in birth or egg hatchingGO:00097922710.054
endoderm developmentGO:0007492490.053
regulation of wnt signaling pathwayGO:0030111530.053
regulation of cell communicationGO:00106462320.051
regulation of cellular biosynthetic processGO:00313262450.051
regulation of embryonic developmentGO:0045995470.051
embryonic limb morphogenesisGO:003032620.050
eye developmentGO:00016542770.050
diencephalon developmentGO:0021536580.050
stem cell proliferationGO:007208940.050
regulation of apoptotic processGO:0042981980.050
embryonic skeletal joint developmentGO:007249830.049
rna metabolic processGO:00160702190.049
vasculogenesisGO:0001570410.048
negative regulation of macromolecule metabolic processGO:0010605760.048
heterocycle metabolic processGO:00464832900.048
gland developmentGO:00487321430.047
regulation of response to stimulusGO:00485832690.046
single organism metabolic processGO:00447102170.046
aromatic compound biosynthetic processGO:00194382170.046
cell projection morphogenesisGO:00488582440.045
pericardium developmentGO:006003910.045
kidney developmentGO:0001822920.044
anterior posterior pattern specificationGO:00099521520.044
heart morphogenesisGO:00030071560.044
regulation of metabolic processGO:00192223590.044
immune system developmentGO:00025201910.044
multi organism processGO:00517041340.043
cellular protein metabolic processGO:00442671290.043
head developmentGO:00603223030.042
cell motilityGO:00488702440.041
negative regulation of sequence specific dna binding transcription factor activityGO:004343320.041
single fertilizationGO:000733830.040
ear developmentGO:00435831270.040
canonical wnt signaling pathwayGO:0060070480.040
generation of neuronsGO:00486993850.039
regulation of cell fate commitmentGO:0010453220.039
notochord developmentGO:0030903540.039
neural crest cell developmentGO:0014032620.039
skeletal system morphogenesisGO:00487051020.039
cell deathGO:00082191210.039
compound eye developmentGO:004874920.037
agingGO:000756820.037
neuron differentiationGO:00301823530.037
somite developmentGO:0061053960.037
nephron tubule morphogenesisGO:007207810.037
pronephros developmentGO:0048793690.036
positive regulation of biological processGO:00485182530.036
embryonic skeletal system morphogenesisGO:0048704930.036
response to nutrientGO:000758430.036
positive regulation of cellular component biogenesisGO:004408930.036
regulation of transmembrane receptor protein serine threonine kinase signaling pathwayGO:0090092500.036
mesenchymal cell differentiationGO:0048762870.036
cellular response to external stimulusGO:007149620.035
regulation of cell proliferation involved in heart morphogenesisGO:200013620.035
regulation of anatomical structure morphogenesisGO:00226031300.034
cognitionGO:005089010.034
regulation of gastrulationGO:0010470240.034
negative regulation of transcription dna templatedGO:0045892450.033
regulation of programmed cell deathGO:00430671010.033
regulation of biological qualityGO:00650082630.033
hematopoietic or lymphoid organ developmentGO:00485341910.033
retina development in camera type eyeGO:00600411460.033
mesoderm morphogenesisGO:0048332510.032
proteolysis involved in cellular protein catabolic processGO:005160330.032
digestive tract morphogenesisGO:00485462310.032
response to chemicalGO:00422213200.031
single organism localizationGO:19025782250.031
cell projection organizationGO:00300302840.031
regulation of multicellular organism growthGO:004001440.031
negative regulation of cell communicationGO:0010648960.031
negative regulation of biosynthetic processGO:0009890550.031
neuron developmentGO:00486662620.030
peripheral nervous system developmentGO:0007422550.030
somatic muscle developmentGO:000752540.030
apoptotic process involved in morphogenesisGO:006056120.030
camera type eye developmentGO:00430102220.029
embryonic pectoral fin morphogenesisGO:0035118240.029
organ formationGO:0048645170.029
positive regulation of dna metabolic processGO:005105410.029
regulation of cell cycleGO:0051726520.029
regulation of cellular amine metabolic processGO:003323800.029
hepaticobiliary system developmentGO:0061008980.029
negative regulation of rna metabolic processGO:0051253480.029
determination of heart left right asymmetryGO:00613711170.028
post embryonic organ developmentGO:004856940.028
formation of primary germ layerGO:0001704620.028
pericardium morphogenesisGO:000334410.028
eye morphogenesisGO:00485921440.027
regulation of cell projection assemblyGO:006049140.027
programmed cell deathGO:00125011190.027
intracellular signal transductionGO:0035556850.027
specification of organ identityGO:001009220.027
system processGO:00030081850.027
positive regulation of nitrogen compound metabolic processGO:0051173690.027
inner ear morphogenesisGO:0042472630.027
homeostatic processGO:00425921420.027
behaviorGO:0007610740.027
septum transversum developmentGO:000334340.027
deathGO:00162651210.026
female sex differentiationGO:004666040.026
nuclear transportGO:005116940.026
cellular response to extracellular stimulusGO:003166820.026
carboxylic acid metabolic processGO:0019752220.026
cell part morphogenesisGO:00329902460.026
regulation of dna templated transcription in response to stressGO:004362000.026
retinal cone cell developmentGO:004654980.026
regulation of organ growthGO:004662030.026
fin developmentGO:0033333770.025
adult behaviorGO:003053420.025
somatic stem cell maintenanceGO:003501910.025
retinal rod cell developmentGO:004654840.025
amine metabolic processGO:000930820.025
germ line stem cell maintenanceGO:003071820.025
regulation of protein transportGO:005122330.025
negative regulation of rna biosynthetic processGO:1902679450.025
cellular ketone metabolic processGO:0042180110.025
cell projection assemblyGO:0030031640.025
developmental growthGO:00485891660.025
female gonad developmentGO:000858540.025
proepicardium developmentGO:000334240.025
regulation of cell deathGO:00109411030.024
negative regulation of signal transductionGO:0009968940.024
proteasome mediated ubiquitin dependent protein catabolic processGO:004316120.024
protein localization to nucleusGO:003450430.024
regulation of cellular ketone metabolic processGO:001056570.024
positive regulation of gene expressionGO:0010628710.024
cell proliferation involved in heart morphogenesisGO:006132320.024
liver developmentGO:0001889960.024
multicellular organism growthGO:003526440.024
positive regulation of i kappab kinase nf kappab signalingGO:004312330.023
cilium assemblyGO:0042384580.023
mesodermal cell differentiationGO:0048333210.023
blood circulationGO:0008015870.023
limb bud formationGO:006017420.023
erythrocyte differentiationGO:0030218540.023
positive regulation of transportGO:005105020.023
inner ear receptor cell differentiationGO:0060113290.023
negative regulation of protein phosphorylationGO:000193340.023
morphogenesis of an epithelial foldGO:006057110.023
response to stressGO:00069502630.023
endoderm formationGO:0001706290.023
axonogenesisGO:00074091520.023
cartilage developmentGO:0051216960.023
regulation of cell activationGO:005086510.023
protein secretionGO:000930610.022
regulation of reproductive processGO:200024140.022
oxoacid metabolic processGO:0043436310.022
connective tissue developmentGO:0061448990.022
cellular amine metabolic processGO:004410620.022
embryonic heart tube developmentGO:00350501330.022
cell fate commitment involved in formation of primary germ layerGO:0060795260.022
epithelial to mesenchymal transitionGO:0001837210.022
regulation of i kappab kinase nf kappab signalingGO:004312240.022
kupffer s vesicle developmentGO:0070121500.022
regulation of production of molecular mediator of immune responseGO:000270010.022
photoreceptor cell differentiationGO:0046530550.022
urogenital system developmentGO:0001655970.022
cell migrationGO:00164772370.022
determination of dorsal ventral asymmetryGO:0048262340.022
regulation of receptor mediated endocytosisGO:004825940.022
response to carbohydrateGO:000974330.022
myeloid cell differentiationGO:0030099860.022
positive regulation of epithelial cell differentiationGO:003085820.022
midbrain hindbrain boundary developmentGO:0030917230.021
embryonic pattern specificationGO:0009880440.021
taxisGO:00423301090.021
maintenance of locationGO:005123540.021
camera type eye morphogenesisGO:00485931080.021
regulation of organ morphogenesisGO:2000027350.021
negative regulation of cellular metabolic processGO:0031324770.021
positive regulation of cellular metabolic processGO:0031325940.021
regulation of epithelial cell proliferationGO:005067830.021
renal system developmentGO:0072001940.021
negative regulation of nucleic acid templated transcriptionGO:1903507450.021
wnt signaling pathwayGO:0016055800.021
nephron morphogenesisGO:007202820.021
proteasomal protein catabolic processGO:001049820.020
regulation of synaptic plasticityGO:004816710.020
regulation of cytoplasmic transportGO:190364940.020
neurological system processGO:0050877620.020
negative regulation of response to stimulusGO:00485851040.020
fertilizationGO:000956630.020
negative regulation of nitrogen compound metabolic processGO:0051172590.020
response to external stimulusGO:00096052640.020
apoptotic process involved in developmentGO:190274220.020
somitogenesisGO:0001756870.020
positive regulation of cellular biosynthetic processGO:0031328680.020
g1 s transition of mitotic cell cycleGO:000008210.019
protein importGO:001703830.019
embryonic cranial skeleton morphogenesisGO:0048701900.019
negative regulation of gene expressionGO:0010629650.019
cellular response to nutrient levelsGO:003166920.019
regulation of protein complex assemblyGO:004325430.019
cellular amino acid metabolic processGO:000652070.019
retina morphogenesis in camera type eyeGO:0060042790.019
nephron epithelium morphogenesisGO:007208810.019
regulation of bindingGO:005109830.019
positive regulation of stem cell proliferationGO:200064810.019
negative regulation of signalingGO:0023057960.019
spinal cord developmentGO:0021510460.019
endocardium morphogenesisGO:000316040.019
regulation of localizationGO:00328791040.019
regulation of cytokine productionGO:000181730.019
regulation of cell developmentGO:00602841000.019
cellular protein catabolic processGO:004425740.019
regulation of cellular amino acid metabolic processGO:000652100.019
regulation of tube sizeGO:003515020.019
ubiquitin dependent protein catabolic processGO:000651130.018
pancreas developmentGO:0031016840.018
meiotic nuclear divisionGO:000712640.018
notch signaling pathwayGO:0007219350.018
skeletal system developmentGO:00015011810.018
mesoderm formationGO:0001707430.018
epithelial cell morphogenesisGO:000338220.018
gastrulation with mouth forming secondGO:0001702440.018
camera type eye photoreceptor cell differentiationGO:0060219190.018
regulation of autophagyGO:001050630.018
protein heterooligomerizationGO:005129110.018
protein metabolic processGO:00195381830.018
peripheral nervous system neuron differentiationGO:0048934280.018
neuroblast proliferationGO:000740520.018
modification dependent macromolecule catabolic processGO:004363230.018
positive regulation of rna biosynthetic processGO:1902680570.018
carbohydrate biosynthetic processGO:001605110.018
embryonic skeletal joint morphogenesisGO:006027230.018
golgi vesicle transportGO:004819330.018
organic acid metabolic processGO:0006082310.018
regulation of organelle assemblyGO:190211540.018
cell cycleGO:0007049930.018
positive regulation of cell activationGO:005086710.017
cell cycle g1 s phase transitionGO:004484310.017
heart joggingGO:0003146400.017
regulation of neural precursor cell proliferationGO:200017730.017
negative regulation of kinase activityGO:003367340.017
protein import into nucleusGO:000660630.017
embryonic heart tube morphogenesisGO:00031431080.017
regulation of establishment of protein localizationGO:007020140.017
kidney epithelium developmentGO:0072073230.017
nucleocytoplasmic transportGO:000691340.017
semicircular canal developmentGO:0060872240.017
stem cell fate determinationGO:004886710.017
autophagyGO:000691440.017
pronephric duct developmentGO:0039022130.017
cardiac cell fate commitmentGO:006091110.017
hematopoietic stem cell differentiationGO:0060218200.017
heterophilic cell cell adhesion via plasma membrane cell adhesion moleculesGO:000715720.017
pronephros morphogenesisGO:0072114140.017
invagination involved in gastrulation with mouth forming secondGO:005510910.017
regulation of cell differentiationGO:00455951420.017
production of molecular mediator of immune responseGO:000244020.017
negative regulation of mapk cascadeGO:004340940.017
neuroblast differentiationGO:001401610.017
axis specificationGO:0009798430.017
positive regulation of biosynthetic processGO:0009891680.017
photoreceptor cell fate commitmentGO:004655210.017
cardiac chamber developmentGO:0003205190.017
response to biotic stimulusGO:0009607970.017
regulation of cellular protein catabolic processGO:190336210.017
regulation of reactive oxygen species metabolic processGO:200037720.017
embryonic hemopoiesisGO:0035162530.017
positive regulation of transcription dna templatedGO:0045893570.017
lateral inhibitionGO:004633110.017
establishment of protein localization to organelleGO:007259440.017
modification dependent protein catabolic processGO:001994130.017
regulation of protein modification by small protein conjugation or removalGO:190332030.017
regulation of protein targetingGO:190353320.017
secondary metabolic processGO:001974830.017
positive regulation of rna metabolic processGO:0051254590.017
positive regulation of immune effector processGO:000269930.016
regulation of exocytosisGO:001715710.016
positive regulation of catabolic processGO:000989640.016
regulation of inflammatory responseGO:005072720.016
fin regenerationGO:0031101510.016
neural tube patterningGO:0021532330.016
meiotic cell cycle processGO:190304630.016
cellular component disassemblyGO:002241110.016
response to bacteriumGO:0009617580.016
cellular response to starvationGO:000926710.016
response to monosaccharideGO:003428430.016
protein modification processGO:00362111000.016
neuron projection morphogenesisGO:00488121610.016
response to hexoseGO:000974630.016
columnar cuboidal epithelial cell differentiationGO:0002065380.016
ear morphogenesisGO:0042471640.016
negative regulation of stem cell differentiationGO:200073720.016
internal peptidyl lysine acetylationGO:001839320.016
peptidyl lysine acetylationGO:001839420.016
single organism organelle organizationGO:19025891990.016
hatchingGO:003518840.016
leukocyte proliferationGO:007066110.016
response to glucoseGO:000974930.016
morphogenesis of an epithelial sheetGO:0002011490.016
auditory receptor cell fate commitmentGO:000991240.015
hemopoiesisGO:00300971830.015
embryonic viscerocranium morphogenesisGO:0048703520.015
single organism nuclear importGO:190259330.015
b cell activationGO:004211320.015
positive regulation of cell adhesionGO:004578510.015
regulation of intracellular protein transportGO:003315730.015
kidney morphogenesisGO:0060993150.015
cell migration involved in gastrulationGO:0042074790.015
positive regulation of cell divisionGO:005178120.015
negative regulation of cellular biosynthetic processGO:0031327550.015
protein acylationGO:004354330.015
positive regulation of cytokine productionGO:000181920.015
positive regulation of gliogenesisGO:001401520.015
regulation of filopodium assemblyGO:005148920.015
positive regulation of macromolecule metabolic processGO:0010604930.015
convergent extensionGO:00600261180.015
negative regulation of cell deathGO:0060548600.015
negative regulation of nucleobase containing compound metabolic processGO:0045934590.015
cell substrate adhesionGO:003158940.015
stem cell fate commitmentGO:004886510.015
renal tubule morphogenesisGO:006133310.015
multicellular organismal metabolic processGO:004423620.015
muscle organ developmentGO:00075171010.015
protein targeting to nucleusGO:004474430.015
positive regulation of muscle tissue developmentGO:190186310.015
regulation of protein import into nucleusGO:004230620.015
epidermis developmentGO:0008544480.014
regulation of dna replicationGO:000627530.014
regulation of meiotic cell cycleGO:005144510.014
growthGO:00400071740.014
astrocyte differentiationGO:004870810.014
positive regulation of macromolecule biosynthetic processGO:0010557590.014
ventral spinal cord developmentGO:0021517350.014
positive regulation of response to stimulusGO:0048584800.014
regulation of nucleocytoplasmic transportGO:004682220.014
internal protein amino acid acetylationGO:000647520.014
endodermal cell fate commitmentGO:0001711180.014
type b pancreatic cell developmentGO:000332340.014
extrinsic apoptotic signaling pathwayGO:009719130.014
lipid storageGO:001991510.014
cellular response to molecule of bacterial originGO:007121930.014
glial cell proliferationGO:001400940.014
axon guidanceGO:0007411860.014
carbohydrate homeostasisGO:003350010.014
negative regulation of cellular macromolecule biosynthetic processGO:2000113480.014
positive regulation of epithelial cell proliferationGO:005067910.014
positive regulation of protein complex assemblyGO:003133420.014
regulation of cellular component organizationGO:0051128860.014
glucose homeostasisGO:004259310.014
regulation of dendrite developmentGO:005077330.014
negative regulation of developmental processGO:0051093650.014
regulation of glial cell proliferationGO:006025140.014
developmental programmed cell deathGO:001062340.014
epithalamus developmentGO:0021538100.014
adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domainsGO:000246040.014
stem cell divisionGO:001714510.013
tissue regenerationGO:0042246740.013
single organism reproductive processGO:0044702400.013
developmental maturationGO:0021700340.013
myeloid cell homeostasisGO:0002262560.013
spinal cord motor neuron differentiationGO:0021522260.013
positive regulation of cellular catabolic processGO:003133130.013
heart formationGO:0060914130.013
guanosine containing compound metabolic processGO:190106840.013
homeostasis of number of cellsGO:0048872620.013
cranial nerve developmentGO:0021545420.013
meiotic chromosome segregationGO:004513230.013
erythrocyte homeostasisGO:0034101550.013
regulation of neuron differentiationGO:0045664560.013
proteolysisGO:0006508380.013
organism emergence from protective structureGO:007168440.013
response to external biotic stimulusGO:0043207970.013
exocytosisGO:000688710.013
peripheral nervous system neuron developmentGO:0048935220.013
regulation of canonical wnt signaling pathwayGO:0060828340.013
nephric duct morphogenesisGO:007217870.013
nerve developmentGO:0021675450.013
regulation of cell cycle processGO:0010564200.013
artery developmentGO:0060840220.013
negative regulation of macromolecule biosynthetic processGO:0010558480.013
regulation of synapse assemblyGO:005196330.013
regulation of cell motilityGO:2000145460.013
establishment of protein localization to plasma membraneGO:009000210.013
eye photoreceptor cell developmentGO:0042462300.012
cellular carbohydrate metabolic processGO:004426240.012
immune responseGO:0006955280.012
embryonic skeletal system developmentGO:0048706970.012
limb developmentGO:006017380.012
enzyme linked receptor protein signaling pathwayGO:00071671060.012
organelle organizationGO:00069962270.012
embryonic appendage morphogenesisGO:0035113300.012
negative regulation of programmed cell deathGO:0043069580.012

mib2 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in zebrafish and predicted with the zebrafish functional network.

DiseaseDO term IDSizeProbabilityFunc Analog Org
disease of anatomical entityDOID:700.056
musculoskeletal system diseaseDOID:1700.023
nervous system diseaseDOID:86300.014
cardiovascular system diseaseDOID:128700.013