| regulation of protein modification by small protein conjugation or removal | GO:1903320 | 3 | 0.090 | |
| cellular macromolecule metabolic process | GO:0044260 | 391 | 0.049 | |
| cellular nitrogen compound metabolic process | GO:0034641 | 290 | 0.042 | |
| cellular aromatic compound metabolic process | GO:0006725 | 295 | 0.041 | |
| larval development | GO:0002164 | 2 | 0.038 | |
| regulation of signaling | GO:0023051 | 235 | 0.037 | |
| regulation of protein ubiquitination | GO:0031396 | 3 | 0.037 | |
| regulation of cellular metabolic process | GO:0031323 | 320 | 0.036 | |
| nitrogen compound metabolic process | GO:0006807 | 319 | 0.035 | |
| nucleobase containing compound metabolic process | GO:0006139 | 274 | 0.035 | |
| organic cyclic compound metabolic process | GO:1901360 | 301 | 0.035 | |
| positive regulation of catabolic process | GO:0009896 | 4 | 0.034 | |
| aging | GO:0007568 | 2 | 0.034 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 4 | 0.033 | |
| synaptic growth at neuromuscular junction | GO:0051124 | 2 | 0.033 | |
| regulation of macromolecule metabolic process | GO:0060255 | 317 | 0.032 | |
| transcription dna templated | GO:0006351 | 181 | 0.032 | |
| nucleocytoplasmic transport | GO:0006913 | 4 | 0.031 | |
| guanosine containing compound catabolic process | GO:1901069 | 2 | 0.031 | |
| gtp metabolic process | GO:0046039 | 4 | 0.030 | |
| mitochondrion organization | GO:0007005 | 4 | 0.030 | |
| regulation of nucleotide catabolic process | GO:0030811 | 2 | 0.030 | |
| gtp catabolic process | GO:0006184 | 2 | 0.030 | |
| single organism metabolic process | GO:0044710 | 217 | 0.029 | |
| nucleic acid metabolic process | GO:0090304 | 244 | 0.028 | |
| regulation of nucleic acid templated transcription | GO:1903506 | 213 | 0.028 | |
| rna modification | GO:0009451 | 2 | 0.028 | |
| protein metabolic process | GO:0019538 | 183 | 0.027 | |
| regulation of response to stimulus | GO:0048583 | 269 | 0.027 | |
| cell morphogenesis | GO:0000902 | 289 | 0.027 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 4 | 0.027 | |
| regulation of nitrogen compound metabolic process | GO:0051171 | 251 | 0.027 | |
| nuclear transport | GO:0051169 | 4 | 0.027 | |
| regulation of rna metabolic process | GO:0051252 | 224 | 0.027 | |
| regulation of nucleoside metabolic process | GO:0009118 | 2 | 0.026 | |
| regulation of signal transduction | GO:0009966 | 225 | 0.026 | |
| regulation of synapse organization | GO:0050807 | 3 | 0.026 | |
| positive regulation of cell cycle | GO:0045787 | 3 | 0.025 | |
| atp catabolic process | GO:0006200 | 4 | 0.025 | |
| maintenance of location | GO:0051235 | 4 | 0.025 | |
| response to nutrient | GO:0007584 | 3 | 0.024 | |
| cellular macromolecule biosynthetic process | GO:0034645 | 224 | 0.024 | |
| regulation of purine nucleotide catabolic process | GO:0033121 | 2 | 0.024 | |
| guanosine containing compound metabolic process | GO:1901068 | 4 | 0.024 | |
| cellular biosynthetic process | GO:0044249 | 286 | 0.024 | |
| macromolecule modification | GO:0043412 | 111 | 0.024 | |
| organic substance biosynthetic process | GO:1901576 | 289 | 0.024 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 4 | 0.023 | |
| positive regulation of cellular catabolic process | GO:0031331 | 3 | 0.023 | |
| positive regulation of nucleoside metabolic process | GO:0045979 | 1 | 0.023 | |
| regulation of metabolic process | GO:0019222 | 359 | 0.023 | |
| cell surface receptor signaling pathway | GO:0007166 | 325 | 0.023 | |
| regulation of multicellular organism growth | GO:0040014 | 4 | 0.023 | |
| negative regulation of biological process | GO:0048519 | 304 | 0.022 | |
| protein modification process | GO:0036211 | 100 | 0.022 | |
| protein import into nucleus | GO:0006606 | 3 | 0.022 | |
| cellular component morphogenesis | GO:0032989 | 336 | 0.022 | |
| cellular amine metabolic process | GO:0044106 | 2 | 0.022 | |
| regulation of cytoplasmic transport | GO:1903649 | 4 | 0.021 | |
| rna biosynthetic process | GO:0032774 | 181 | 0.021 | |
| regulation of synapse assembly | GO:0051963 | 3 | 0.021 | |
| development of primary female sexual characteristics | GO:0046545 | 4 | 0.021 | |
| protein targeting to nucleus | GO:0044744 | 3 | 0.021 | |
| positive regulation of nucleotide catabolic process | GO:0030813 | 1 | 0.021 | |
| establishment of protein localization to organelle | GO:0072594 | 4 | 0.021 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.021 | |
| cellular response to extracellular stimulus | GO:0031668 | 2 | 0.021 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 3 | 0.021 | |
| female sex differentiation | GO:0046660 | 4 | 0.021 | |
| cellular protein metabolic process | GO:0044267 | 129 | 0.020 | |
| regulation of gene expression | GO:0010468 | 265 | 0.020 | |
| axonogenesis | GO:0007409 | 152 | 0.020 | |
| positive regulation of transport | GO:0051050 | 2 | 0.020 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 4 | 0.020 | |
| regulation of cellular amine metabolic process | GO:0033238 | 0 | 0.020 | |
| regulation of protein transport | GO:0051223 | 3 | 0.020 | |
| amine metabolic process | GO:0009308 | 2 | 0.020 | |
| multicellular organism growth | GO:0035264 | 4 | 0.020 | |
| aromatic compound biosynthetic process | GO:0019438 | 217 | 0.020 | |
| response to chemical | GO:0042221 | 320 | 0.020 | |
| regulation of synaptic growth at neuromuscular junction | GO:0008582 | 1 | 0.020 | |
| secondary metabolic process | GO:0019748 | 3 | 0.020 | |
| gene expression | GO:0010467 | 252 | 0.020 | |
| sulfur compound transport | GO:0072348 | 3 | 0.019 | |
| protein localization to nucleus | GO:0034504 | 3 | 0.019 | |
| lipid storage | GO:0019915 | 1 | 0.019 | |
| cellular protein catabolic process | GO:0044257 | 4 | 0.019 | |
| adult behavior | GO:0030534 | 2 | 0.019 | |
| rna metabolic process | GO:0016070 | 219 | 0.019 | |
| digestive system development | GO:0055123 | 289 | 0.019 | |
| nuclear import | GO:0051170 | 3 | 0.019 | |
| single organism nuclear import | GO:1902593 | 3 | 0.019 | |
| i kappab kinase nf kappab signaling | GO:0007249 | 4 | 0.019 | |
| cellular response to external stimulus | GO:0071496 | 2 | 0.019 | |
| phagocytosis | GO:0006909 | 3 | 0.019 | |
| heterocycle biosynthetic process | GO:0018130 | 215 | 0.019 | |
| signal transduction | GO:0007165 | 455 | 0.019 | |
| regulation of developmental process | GO:0050793 | 247 | 0.018 | |
| regulation of jak stat cascade | GO:0046425 | 3 | 0.018 | |
| positive regulation of gtpase activity | GO:0043547 | 1 | 0.018 | |
| positive regulation of purine nucleotide catabolic process | GO:0033123 | 1 | 0.018 | |
| regulation of protein targeting | GO:1903533 | 2 | 0.018 | |
| sensory organ development | GO:0007423 | 393 | 0.018 | |
| regulation of cell communication | GO:0010646 | 232 | 0.018 | |
| female gonad development | GO:0008585 | 4 | 0.018 | |
| meiotic nuclear division | GO:0007126 | 4 | 0.018 | |
| regulation of cell activation | GO:0050865 | 1 | 0.018 | |
| immune system process | GO:0002376 | 241 | 0.018 | |
| regulation of cellular macromolecule biosynthetic process | GO:2000112 | 222 | 0.018 | |
| regulation of nucleobase containing compound metabolic process | GO:0019219 | 250 | 0.018 | |
| regulation of primary metabolic process | GO:0080090 | 311 | 0.018 | |
| nuclear export | GO:0051168 | 1 | 0.017 | |
| regionalization | GO:0003002 | 274 | 0.017 | |
| regulation of extrinsic apoptotic signaling pathway | GO:2001236 | 3 | 0.017 | |
| response to external stimulus | GO:0009605 | 264 | 0.017 | |
| regulation of establishment of protein localization | GO:0070201 | 4 | 0.017 | |
| negative regulation of mitosis | GO:0045839 | 3 | 0.017 | |
| eye development | GO:0001654 | 277 | 0.017 | |
| nucleic acid templated transcription | GO:0097659 | 181 | 0.017 | |
| organonitrogen compound metabolic process | GO:1901564 | 74 | 0.017 | |
| meiotic cell cycle process | GO:1903046 | 3 | 0.016 | |
| regulation of intracellular protein transport | GO:0033157 | 3 | 0.016 | |
| regulation of gtpase activity | GO:0043087 | 2 | 0.016 | |
| positive regulation of gtp catabolic process | GO:0033126 | 1 | 0.016 | |
| regulation of response to extracellular stimulus | GO:0032104 | 1 | 0.016 | |
| regulation of cellular biosynthetic process | GO:0031326 | 245 | 0.016 | |
| regulation of transcription dna templated | GO:0006355 | 213 | 0.016 | |
| chordate embryonic development | GO:0043009 | 271 | 0.016 | |
| cell cycle g1 s phase transition | GO:0044843 | 1 | 0.016 | |
| regulation of nucleocytoplasmic transport | GO:0046822 | 2 | 0.016 | |
| response to stress | GO:0006950 | 263 | 0.016 | |
| regulation of cytokine production | GO:0001817 | 3 | 0.016 | |
| regulation of translational initiation | GO:0006446 | 1 | 0.016 | |
| biosynthetic process | GO:0009058 | 294 | 0.016 | |
| sister chromatid cohesion | GO:0007062 | 2 | 0.016 | |
| response to corticosteroid | GO:0031960 | 1 | 0.016 | |
| regulation of binding | GO:0051098 | 3 | 0.015 | |
| cellular protein modification process | GO:0006464 | 100 | 0.015 | |
| regulation of gtp catabolic process | GO:0033124 | 2 | 0.015 | |
| protein stabilization | GO:0050821 | 2 | 0.015 | |
| regulation of multicellular organismal process | GO:0051239 | 277 | 0.015 | |
| negative regulation of cytoplasmic transport | GO:1903650 | 2 | 0.015 | |
| cellular nitrogen compound biosynthetic process | GO:0044271 | 218 | 0.015 | |
| regulation of protein localization to nucleus | GO:1900180 | 2 | 0.015 | |
| response to drug | GO:0042493 | 3 | 0.015 | |
| cellular response to nutrient levels | GO:0031669 | 2 | 0.015 | |
| stem cell maintenance | GO:0019827 | 4 | 0.015 | |
| negative regulation of protein kinase activity | GO:0006469 | 4 | 0.015 | |
| regulation of protein import into nucleus | GO:0042306 | 2 | 0.015 | |
| response to uv | GO:0009411 | 3 | 0.015 | |
| cellular amide metabolic process | GO:0043603 | 4 | 0.015 | |
| embryonic organ development | GO:0048568 | 381 | 0.015 | |
| regulation of biosynthetic process | GO:0009889 | 250 | 0.015 | |
| regulation of macromolecule biosynthetic process | GO:0010556 | 225 | 0.015 | |
| negative regulation of protein phosphorylation | GO:0001933 | 4 | 0.015 | |
| vacuolar transport | GO:0007034 | 2 | 0.014 | |
| response to carbohydrate | GO:0009743 | 3 | 0.014 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 1 | 0.014 | |
| organic cyclic compound biosynthetic process | GO:1901362 | 223 | 0.014 | |
| negative regulation of sequence specific dna binding transcription factor activity | GO:0043433 | 2 | 0.014 | |
| cognition | GO:0050890 | 1 | 0.014 | |
| regulation of multicellular organismal development | GO:2000026 | 223 | 0.014 | |
| regulation of i kappab kinase nf kappab signaling | GO:0043122 | 4 | 0.014 | |
| developmental growth involved in morphogenesis | GO:0060560 | 86 | 0.014 | |
| peptidyl serine modification | GO:0018209 | 2 | 0.014 | |
| regulation of rna biosynthetic process | GO:2001141 | 213 | 0.014 | |
| neuron projection development | GO:0031175 | 180 | 0.014 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 1 | 0.014 | |
| organic acid metabolic process | GO:0006082 | 31 | 0.014 | |
| cell projection morphogenesis | GO:0048858 | 244 | 0.013 | |
| positive regulation of erk1 and erk2 cascade | GO:0070374 | 2 | 0.013 | |
| tube morphogenesis | GO:0035239 | 349 | 0.013 | |
| positive regulation of immune effector process | GO:0002699 | 3 | 0.013 | |
| peptide metabolic process | GO:0006518 | 1 | 0.013 | |
| b cell mediated immunity | GO:0019724 | 3 | 0.013 | |
| production of molecular mediator of immune response | GO:0002440 | 2 | 0.013 | |
| response to monosaccharide | GO:0034284 | 3 | 0.013 | |
| b cell activation | GO:0042113 | 2 | 0.013 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 80 | 0.013 | |
| negative regulation of cellular process | GO:0048523 | 283 | 0.013 | |
| leukocyte proliferation | GO:0070661 | 1 | 0.013 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 0 | 0.013 | |
| negative regulation of nucleocytoplasmic transport | GO:0046823 | 2 | 0.013 | |
| regulation of epithelial cell proliferation | GO:0050678 | 3 | 0.013 | |
| protein import | GO:0017038 | 3 | 0.013 | |
| rna 3 end processing | GO:0031123 | 2 | 0.013 | |
| nucleobase containing compound transport | GO:0015931 | 2 | 0.013 | |
| retina development in camera type eye | GO:0060041 | 146 | 0.013 | |
| translational initiation | GO:0006413 | 3 | 0.013 | |
| peptidyl lysine acetylation | GO:0018394 | 2 | 0.013 | |
| heterocycle metabolic process | GO:0046483 | 290 | 0.013 | |
| cell part morphogenesis | GO:0032990 | 246 | 0.013 | |
| primary neural tube formation | GO:0014020 | 1 | 0.013 | |
| specification of symmetry | GO:0009799 | 204 | 0.012 | |
| cellular amino acid metabolic process | GO:0006520 | 7 | 0.012 | |
| cellular response to radiation | GO:0071478 | 4 | 0.012 | |
| regulation of protein binding | GO:0043393 | 3 | 0.012 | |
| cellular carbohydrate metabolic process | GO:0044262 | 4 | 0.012 | |
| intracellular signal transduction | GO:0035556 | 85 | 0.012 | |
| macromolecule biosynthetic process | GO:0009059 | 227 | 0.012 | |
| extrinsic apoptotic signaling pathway | GO:0097191 | 3 | 0.012 | |
| adherens junction organization | GO:0034332 | 4 | 0.012 | |
| regulation of molecular function | GO:0065009 | 70 | 0.012 | |
| protein localization to plasma membrane | GO:0072659 | 1 | 0.012 | |
| cellular response to light stimulus | GO:0071482 | 4 | 0.012 | |
| liver development | GO:0001889 | 96 | 0.012 | |
| regulation of meiotic cell cycle | GO:0051445 | 1 | 0.012 | |
| lymphocyte proliferation | GO:0046651 | 1 | 0.012 | |
| nucleobase containing compound biosynthetic process | GO:0034654 | 205 | 0.012 | |
| generation of neurons | GO:0048699 | 385 | 0.012 | |
| digestive tract morphogenesis | GO:0048546 | 231 | 0.012 | |
| regulation of sodium ion transport | GO:0002028 | 2 | 0.012 | |
| negative regulation of protein import into nucleus | GO:0042308 | 2 | 0.012 | |
| stem cell division | GO:0017145 | 1 | 0.012 | |
| neuron projection morphogenesis | GO:0048812 | 161 | 0.012 | |
| negative regulation of intracellular protein transport | GO:0090317 | 3 | 0.012 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 0 | 0.012 | |
| system process | GO:0003008 | 185 | 0.012 | |
| alcohol biosynthetic process | GO:0046165 | 2 | 0.012 | |
| meiotic chromosome segregation | GO:0045132 | 3 | 0.012 | |
| oxoacid metabolic process | GO:0043436 | 31 | 0.012 | |
| cell morphogenesis involved in differentiation | GO:0000904 | 195 | 0.012 | |
| response to hexose | GO:0009746 | 3 | 0.011 | |
| regulation of microtubule cytoskeleton organization | GO:0070507 | 3 | 0.011 | |
| proteasomal protein catabolic process | GO:0010498 | 2 | 0.011 | |
| mononuclear cell proliferation | GO:0032943 | 1 | 0.011 | |
| negative regulation of protein transport | GO:0051224 | 3 | 0.011 | |
| exocytosis | GO:0006887 | 1 | 0.011 | |
| cellular response to oxygen levels | GO:0071453 | 1 | 0.011 | |
| regulation of cell differentiation | GO:0045595 | 142 | 0.011 | |
| positive regulation of secretion | GO:0051047 | 1 | 0.011 | |
| adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | GO:0002460 | 4 | 0.011 | |
| cell projection organization | GO:0030030 | 284 | 0.011 | |
| negative regulation of mapk cascade | GO:0043409 | 4 | 0.011 | |
| regulation of protein catabolic process | GO:0042176 | 1 | 0.011 | |
| stem cell proliferation | GO:0072089 | 4 | 0.011 | |
| negative regulation of intracellular transport | GO:0032387 | 3 | 0.011 | |
| small molecule metabolic process | GO:0044281 | 77 | 0.011 | |
| heart development | GO:0007507 | 313 | 0.011 | |
| negative regulation of protein complex assembly | GO:0031333 | 1 | 0.011 | |
| internal protein amino acid acetylation | GO:0006475 | 2 | 0.011 | |
| protein acylation | GO:0043543 | 3 | 0.011 | |
| cell matrix adhesion | GO:0007160 | 4 | 0.011 | |
| phagocytosis engulfment | GO:0006911 | 1 | 0.011 | |
| spindle assembly | GO:0051225 | 2 | 0.011 | |
| positive regulation of stem cell proliferation | GO:2000648 | 1 | 0.011 | |
| cellular response to chemical stimulus | GO:0070887 | 157 | 0.011 | |
| response to glucose | GO:0009749 | 3 | 0.011 | |
| cellular response to hypoxia | GO:0071456 | 1 | 0.011 | |
| positive regulation of cytokine production | GO:0001819 | 2 | 0.011 | |
| ameboidal type cell migration | GO:0001667 | 143 | 0.011 | |
| regulation of stem cell proliferation | GO:0072091 | 2 | 0.011 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 7 | 0.011 | |
| regulation of systemic arterial blood pressure | GO:0003073 | 1 | 0.011 | |
| negative regulation of kinase activity | GO:0033673 | 4 | 0.011 | |
| positive regulation of epithelial cell proliferation | GO:0050679 | 1 | 0.011 | |
| camera type eye development | GO:0043010 | 222 | 0.011 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 271 | 0.010 | |
| anterior posterior pattern specification | GO:0009952 | 152 | 0.010 | |
| negative regulation of synapse assembly | GO:0051964 | 2 | 0.010 | |
| tube closure | GO:0060606 | 1 | 0.010 | |
| erk1 and erk2 cascade | GO:0070371 | 4 | 0.010 | |
| regulation of inflammatory response | GO:0050727 | 2 | 0.010 | |
| positive regulation of mesenchymal cell proliferation | GO:0002053 | 1 | 0.010 | |
| negative chemotaxis | GO:0050919 | 1 | 0.010 | |
| negative regulation of leukocyte differentiation | GO:1902106 | 1 | 0.010 | |
| glucose import | GO:0046323 | 2 | 0.010 | |
| negative regulation of catabolic process | GO:0009895 | 3 | 0.010 | |
| negative regulation of reproductive process | GO:2000242 | 3 | 0.010 | |
| regulation of reproductive process | GO:2000241 | 4 | 0.010 | |
| maturation of ssu rrna | GO:0030490 | 1 | 0.010 | |
