| regulation of mrna processing | GO:0050684 | 3 | 0.892 | |
| regulation of mrna splicing via spliceosome | GO:0048024 | 3 | 0.660 | |
| cellular aromatic compound metabolic process | GO:0006725 | 295 | 0.596 | |
| cellular nitrogen compound metabolic process | GO:0034641 | 290 | 0.566 | |
| gene expression | GO:0010467 | 252 | 0.540 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 10 | 0.486 | |
| regulation of nitrogen compound metabolic process | GO:0051171 | 251 | 0.469 | |
| regulation of cellular metabolic process | GO:0031323 | 320 | 0.457 | |
| regulation of alternative mrna splicing via spliceosome | GO:0000381 | 1 | 0.452 | |
| alternative mrna splicing via spliceosome | GO:0000380 | 1 | 0.420 | |
| organic cyclic compound metabolic process | GO:1901360 | 301 | 0.408 | |
| rna processing | GO:0006396 | 25 | 0.357 | |
| nucleobase containing compound metabolic process | GO:0006139 | 274 | 0.335 | |
| regulation of metabolic process | GO:0019222 | 359 | 0.335 | |
| negative regulation of gene expression | GO:0010629 | 65 | 0.322 | |
| cellular macromolecule biosynthetic process | GO:0034645 | 224 | 0.282 | |
| regulation of rna metabolic process | GO:0051252 | 224 | 0.254 | |
| heterocycle metabolic process | GO:0046483 | 290 | 0.205 | |
| mrna metabolic process | GO:0016071 | 20 | 0.201 | |
| negative regulation of rna splicing | GO:0033119 | 1 | 0.196 | |
| regulation of macromolecule metabolic process | GO:0060255 | 317 | 0.194 | |
| regulation of signaling | GO:0023051 | 235 | 0.193 | |
| cellular biosynthetic process | GO:0044249 | 286 | 0.183 | |
| nitrogen compound metabolic process | GO:0006807 | 319 | 0.170 | |
| regulation of nucleobase containing compound metabolic process | GO:0019219 | 250 | 0.165 | |
| regulation of gene expression | GO:0010468 | 265 | 0.157 | |
| negative regulation of cellular process | GO:0048523 | 283 | 0.150 | |
| regulation of meiotic cell cycle | GO:0051445 | 1 | 0.142 | |
| organelle fission | GO:0048285 | 23 | 0.140 | |
| cellular macromolecule metabolic process | GO:0044260 | 391 | 0.135 | |
| rna metabolic process | GO:0016070 | 219 | 0.115 | |
| regulation of multicellular organismal development | GO:2000026 | 223 | 0.115 | Fly |
| regulation of developmental process | GO:0050793 | 247 | 0.113 | Fly |
| negative regulation of biological process | GO:0048519 | 304 | 0.113 | |
| multi organism process | GO:0051704 | 134 | 0.113 | |
| rna splicing | GO:0008380 | 16 | 0.108 | |
| pole plasm assembly | GO:0007315 | 4 | 0.107 | |
| negative regulation of metabolic process | GO:0009892 | 86 | 0.104 | |
| regulation of biosynthetic process | GO:0009889 | 250 | 0.100 | |
| regulation of signal transduction | GO:0009966 | 225 | 0.100 | |
| nucleobase containing compound biosynthetic process | GO:0034654 | 205 | 0.098 | |
| cellular nitrogen compound biosynthetic process | GO:0044271 | 218 | 0.092 | |
| positive regulation of biological process | GO:0048518 | 253 | 0.083 | Fly |
| regulation of multicellular organismal process | GO:0051239 | 277 | 0.083 | Fly |
| meiotic nuclear division | GO:0007126 | 4 | 0.081 | |
| regulation of cell communication | GO:0010646 | 232 | 0.079 | |
| regulation of cellular biosynthetic process | GO:0031326 | 245 | 0.078 | |
| regulation of response to stimulus | GO:0048583 | 269 | 0.077 | |
| signal transduction | GO:0007165 | 455 | 0.076 | |
| stem cell maintenance | GO:0019827 | 4 | 0.076 | |
| positive regulation of transport | GO:0051050 | 2 | 0.075 | |
| blood vessel morphogenesis | GO:0048514 | 216 | 0.073 | |
| growth | GO:0040007 | 174 | 0.071 | Fly |
| regulation of cellular macromolecule biosynthetic process | GO:2000112 | 222 | 0.071 | |
| cell death in response to oxidative stress | GO:0036473 | 2 | 0.070 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 59 | 0.069 | |
| nucleic acid metabolic process | GO:0090304 | 244 | 0.069 | |
| cellular component movement | GO:0006928 | 335 | 0.068 | |
| aromatic compound biosynthetic process | GO:0019438 | 217 | 0.066 | |
| regulation of rna biosynthetic process | GO:2001141 | 213 | 0.065 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 4 | 0.065 | |
| oocyte anterior posterior axis specification | GO:0007314 | 4 | 0.064 | |
| regulation of cellular response to oxidative stress | GO:1900407 | 2 | 0.064 | |
| locomotion | GO:0040011 | 313 | 0.063 | |
| rna splicing via transesterification reactions | GO:0000375 | 10 | 0.060 | |
| rna biosynthetic process | GO:0032774 | 181 | 0.059 | |
| multi organism reproductive process | GO:0044703 | 36 | 0.059 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 76 | 0.058 | |
| angiogenesis | GO:0001525 | 158 | 0.056 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 59 | 0.056 | |
| regulation of macromolecule biosynthetic process | GO:0010556 | 225 | 0.054 | |
| response to uv | GO:0009411 | 3 | 0.054 | |
| organic substance biosynthetic process | GO:1901576 | 289 | 0.054 | |
| regulation of primary metabolic process | GO:0080090 | 311 | 0.054 | |
| nucleic acid templated transcription | GO:0097659 | 181 | 0.051 | |
| macromolecule biosynthetic process | GO:0009059 | 227 | 0.049 | |
| organic cyclic compound biosynthetic process | GO:1901362 | 223 | 0.048 | |
| biosynthetic process | GO:0009058 | 294 | 0.047 | |
| regulation of synapse organization | GO:0050807 | 3 | 0.047 | Fly |
| regulation of mrna metabolic process | GO:1903311 | 6 | 0.047 | |
| localization of cell | GO:0051674 | 244 | 0.045 | |
| regulation of reproductive process | GO:2000241 | 4 | 0.043 | |
| regulation of cell shape | GO:0008360 | 1 | 0.042 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 271 | 0.041 | |
| eye development | GO:0001654 | 277 | 0.041 | Fly |
| positive regulation of cellular process | GO:0048522 | 201 | 0.041 | Fly |
| chordate embryonic development | GO:0043009 | 271 | 0.041 | |
| hemopoiesis | GO:0030097 | 183 | 0.041 | |
| hematopoietic or lymphoid organ development | GO:0048534 | 191 | 0.040 | |
| rna stabilization | GO:0043489 | 4 | 0.039 | |
| immune system development | GO:0002520 | 191 | 0.039 | |
| cell proliferation | GO:0008283 | 80 | 0.039 | |
| response to abiotic stimulus | GO:0009628 | 122 | 0.039 | |
| maintenance of location | GO:0051235 | 4 | 0.039 | |
| stem cell proliferation | GO:0072089 | 4 | 0.038 | |
| cellular response to stress | GO:0033554 | 62 | 0.037 | |
| positive regulation of cellular catabolic process | GO:0031331 | 3 | 0.037 | |
| negative regulation of rna metabolic process | GO:0051253 | 48 | 0.037 | |
| female gonad development | GO:0008585 | 4 | 0.036 | |
| protein metabolic process | GO:0019538 | 183 | 0.035 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 3 | 0.035 | Fly |
| posttranscriptional gene silencing by rna | GO:0035194 | 3 | 0.035 | |
| regulation of synapse assembly | GO:0051963 | 3 | 0.035 | Fly |
| spermatid differentiation | GO:0048515 | 2 | 0.035 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 48 | 0.034 | |
| response to external stimulus | GO:0009605 | 264 | 0.034 | |
| somite development | GO:0061053 | 96 | 0.034 | |
| mrna processing | GO:0006397 | 14 | 0.034 | |
| transcription dna templated | GO:0006351 | 181 | 0.034 | |
| regulation of cellular component organization | GO:0051128 | 86 | 0.033 | Fly |
| larval development | GO:0002164 | 2 | 0.032 | |
| response to chemical | GO:0042221 | 320 | 0.032 | |
| response to biotic stimulus | GO:0009607 | 97 | 0.031 | |
| regulation of rna splicing | GO:0043484 | 8 | 0.031 | |
| dsrna fragmentation | GO:0031050 | 1 | 0.030 | |
| immune system process | GO:0002376 | 241 | 0.030 | |
| lipid storage | GO:0019915 | 1 | 0.030 | |
| anterior posterior pattern specification | GO:0009952 | 152 | 0.030 | |
| gene silencing by rna | GO:0031047 | 4 | 0.030 | |
| negative regulation of multicellular organismal process | GO:0051241 | 69 | 0.029 | |
| regulation of biological quality | GO:0065008 | 263 | 0.029 | Fly |
| response to temperature stimulus | GO:0009266 | 15 | 0.029 | |
| regulation of cell differentiation | GO:0045595 | 142 | 0.028 | |
| specification of symmetry | GO:0009799 | 204 | 0.028 | |
| posttranscriptional gene silencing | GO:0016441 | 3 | 0.028 | |
| behavior | GO:0007610 | 74 | 0.027 | Fly |
| cell migration | GO:0016477 | 237 | 0.027 | |
| aging | GO:0007568 | 2 | 0.026 | |
| developmental cell growth | GO:0048588 | 52 | 0.026 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 69 | 0.026 | |
| multi organism cellular process | GO:0044764 | 2 | 0.026 | |
| viral process | GO:0016032 | 1 | 0.026 | |
| negative regulation of mrna metabolic process | GO:1903312 | 3 | 0.026 | |
| negative regulation of biosynthetic process | GO:0009890 | 55 | 0.026 | |
| positive regulation of biosynthetic process | GO:0009891 | 68 | 0.025 | |
| dorsal ventral pattern formation | GO:0009953 | 125 | 0.025 | |
| determination of bilateral symmetry | GO:0009855 | 204 | 0.025 | |
| gene silencing | GO:0016458 | 4 | 0.024 | |
| mrna splicing via spliceosome | GO:0000398 | 10 | 0.024 | |
| multicellular organism growth | GO:0035264 | 4 | 0.024 | |
| response to organic substance | GO:0010033 | 153 | 0.024 | |
| regulation of growth rate | GO:0040009 | 1 | 0.024 | |
| gene silencing by mirna | GO:0035195 | 3 | 0.024 | |
| negative regulation of developmental process | GO:0051093 | 65 | 0.024 | |
| cell motility | GO:0048870 | 244 | 0.023 | |
| embryonic pattern specification | GO:0009880 | 44 | 0.023 | |
| response to light stimulus | GO:0009416 | 46 | 0.023 | |
| response to cold | GO:0009409 | 4 | 0.022 | |
| regulation of myeloid cell differentiation | GO:0045637 | 8 | 0.022 | |
| regionalization | GO:0003002 | 274 | 0.022 | |
| intracellular mrna localization | GO:0008298 | 1 | 0.022 | |
| interspecies interaction between organisms | GO:0044419 | 4 | 0.022 | |
| rna localization | GO:0006403 | 4 | 0.022 | |
| regulation of protein targeting | GO:1903533 | 2 | 0.022 | |
| negative regulation of response to stimulus | GO:0048585 | 104 | 0.022 | |
| response to radiation | GO:0009314 | 51 | 0.021 | |
| multicellular organism reproduction | GO:0032504 | 35 | 0.021 | |
| heterocycle biosynthetic process | GO:0018130 | 215 | 0.021 | |
| segmentation | GO:0035282 | 97 | 0.021 | |
| response to wounding | GO:0009611 | 116 | 0.021 | |
| cellular biogenic amine metabolic process | GO:0006576 | 2 | 0.021 | |
| cellular component assembly | GO:0022607 | 170 | 0.021 | Fly |
| regulation of gene expression epigenetic | GO:0040029 | 11 | 0.021 | |
| production of small rna involved in gene silencing by rna | GO:0070918 | 1 | 0.020 | |
| blood vessel development | GO:0001568 | 246 | 0.020 | |
| synaptic growth at neuromuscular junction | GO:0051124 | 2 | 0.020 | Fly |
| negative regulation of signal transduction | GO:0009968 | 94 | 0.020 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 48 | 0.020 | |
| amine metabolic process | GO:0009308 | 2 | 0.020 | |
| translational initiation | GO:0006413 | 3 | 0.019 | |
| neural crest cell development | GO:0014032 | 62 | 0.019 | |
| negative regulation of myeloid cell differentiation | GO:0045638 | 1 | 0.019 | |
| regulation of response to oxidative stress | GO:1902882 | 2 | 0.019 | |
| negative regulation of tor signaling | GO:0032007 | 2 | 0.019 | |
| regulation of translational initiation | GO:0006446 | 1 | 0.019 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 3 | 0.019 | |
| regulation of cell development | GO:0060284 | 100 | 0.019 | |
| regulation of oxidative stress induced intrinsic apoptotic signaling pathway | GO:1902175 | 2 | 0.018 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 3 | 0.018 | |
| regulation of vasculature development | GO:1901342 | 33 | 0.018 | |
| adult behavior | GO:0030534 | 2 | 0.018 | Fly |
| regulation of nucleic acid templated transcription | GO:1903506 | 213 | 0.018 | |
| regulation of intracellular protein transport | GO:0033157 | 3 | 0.018 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 14 | 0.018 | |
| regulation of oxidative stress induced cell death | GO:1903201 | 2 | 0.018 | |
| regulation of nucleocytoplasmic transport | GO:0046822 | 2 | 0.017 | |
| neural crest cell differentiation | GO:0014033 | 72 | 0.017 | |
| response to drug | GO:0042493 | 3 | 0.017 | |
| regulation of symbiosis encompassing mutualism through parasitism | GO:0043903 | 1 | 0.017 | |
| regulation of cell death | GO:0010941 | 103 | 0.017 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 69 | 0.017 | |
| gamete generation | GO:0007276 | 33 | 0.017 | |
| negative regulation of translation | GO:0017148 | 1 | 0.017 | |
| cellular response to dsrna | GO:0071359 | 1 | 0.017 | |
| establishment of protein localization to organelle | GO:0072594 | 4 | 0.017 | |
| regulation of cytoplasmic transport | GO:1903649 | 4 | 0.017 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 55 | 0.017 | |
| macromolecule localization | GO:0033036 | 54 | 0.017 | |
| cell death | GO:0008219 | 121 | 0.017 | |
| regulation of protein catabolic process | GO:0042176 | 1 | 0.017 | |
| regulation of cell cycle | GO:0051726 | 52 | 0.016 | |
| regulation of synaptic growth at neuromuscular junction | GO:0008582 | 1 | 0.016 | Fly |
| cellular response to molecule of bacterial origin | GO:0071219 | 3 | 0.016 | |
| oocyte axis specification | GO:0007309 | 5 | 0.016 | |
| regulation of establishment of protein localization | GO:0070201 | 4 | 0.016 | |
| epithelial cell differentiation | GO:0030855 | 116 | 0.016 | |
| negative regulation of cell differentiation | GO:0045596 | 46 | 0.016 | |
| intrinsic apoptotic signaling pathway in response to oxidative stress | GO:0008631 | 2 | 0.016 | |
| positive regulation of metabolic process | GO:0009893 | 108 | 0.016 | |
| regulation of cell activation | GO:0050865 | 1 | 0.016 | |
| sensory organ development | GO:0007423 | 393 | 0.016 | Fly |
| embryonic organ morphogenesis | GO:0048562 | 274 | 0.016 | |
| oxoacid metabolic process | GO:0043436 | 31 | 0.016 | |
| positive regulation of cytosolic calcium ion concentration | GO:0007204 | 4 | 0.016 | |
| intracellular signal transduction | GO:0035556 | 85 | 0.015 | |
| compound eye development | GO:0048749 | 2 | 0.015 | Fly |
| development of primary female sexual characteristics | GO:0046545 | 4 | 0.015 | |
| regulation of localization | GO:0032879 | 104 | 0.015 | |
| regulation of peptidyl tyrosine phosphorylation | GO:0050730 | 1 | 0.015 | |
| response to other organism | GO:0051707 | 97 | 0.015 | |
| regulation of transcription dna templated | GO:0006355 | 213 | 0.015 | |
| regulation of binding | GO:0051098 | 3 | 0.015 | |
| response to lipopolysaccharide | GO:0032496 | 13 | 0.014 | |
| phosphate containing compound metabolic process | GO:0006796 | 108 | 0.014 | |
| camera type eye development | GO:0043010 | 222 | 0.014 | |
| stem cell development | GO:0048864 | 82 | 0.014 | |
| symbiosis encompassing mutualism through parasitism | GO:0044403 | 4 | 0.014 | |
| tissue remodeling | GO:0048771 | 4 | 0.014 | |
| negative regulation of nucleocytoplasmic transport | GO:0046823 | 2 | 0.014 | |
| positive regulation of stem cell proliferation | GO:2000648 | 1 | 0.014 | |
| positive regulation of response to stimulus | GO:0048584 | 80 | 0.014 | |
| b cell activation | GO:0042113 | 2 | 0.014 | |
| protein secretion | GO:0009306 | 1 | 0.014 | |
| anterior posterior axis specification | GO:0009948 | 20 | 0.013 | |
| spermatid development | GO:0007286 | 2 | 0.013 | |
| oocyte development | GO:0048599 | 14 | 0.013 | |
| multicellular organismal reproductive process | GO:0048609 | 35 | 0.013 | |
| programmed cell death | GO:0012501 | 119 | 0.013 | |
| regulation of apoptotic process | GO:0042981 | 98 | 0.013 | |
| cellular response to lipopolysaccharide | GO:0071222 | 3 | 0.013 | |
| regulation of multicellular organism growth | GO:0040014 | 4 | 0.013 | |
| dicarboxylic acid transport | GO:0006835 | 1 | 0.013 | |
| embryonic organ development | GO:0048568 | 381 | 0.013 | |
| response to oxygen containing compound | GO:1901700 | 55 | 0.012 | |
| negative regulation of cell projection organization | GO:0031345 | 9 | 0.012 | |
| positive regulation of epithelial cell proliferation | GO:0050679 | 1 | 0.012 | |
| myeloid cell differentiation | GO:0030099 | 86 | 0.012 | |
| meiotic chromosome segregation | GO:0045132 | 3 | 0.012 | |
| response to stress | GO:0006950 | 263 | 0.012 | |
| cellular component biogenesis | GO:0044085 | 178 | 0.012 | Fly |
| rna modification | GO:0009451 | 2 | 0.012 | |
| cytokinesis | GO:0000910 | 3 | 0.012 | |
| spermatogenesis | GO:0007283 | 7 | 0.012 | |
| positive regulation of synapse assembly | GO:0051965 | 1 | 0.012 | Fly |
| reproductive process | GO:0022414 | 40 | 0.012 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 80 | 0.012 | |
| dorsal aorta morphogenesis | GO:0035912 | 3 | 0.012 | |
| cytoplasm organization | GO:0007028 | 4 | 0.012 | |
| positive regulation of multi organism process | GO:0043902 | 3 | 0.011 | |
| single organism organelle organization | GO:1902589 | 199 | 0.011 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 45 | 0.011 | |
| muscle tissue development | GO:0060537 | 110 | 0.011 | |
| positive regulation of catabolic process | GO:0009896 | 4 | 0.011 | |
| cell cycle | GO:0007049 | 93 | 0.011 | |
| cellular response to radiation | GO:0071478 | 4 | 0.011 | |
| positive regulation of cellular metabolic process | GO:0031325 | 94 | 0.011 | |
| morphogenesis of an epithelium | GO:0002009 | 333 | 0.011 | |
| somatic muscle development | GO:0007525 | 4 | 0.011 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 59 | 0.011 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 130 | 0.011 | |
| negative regulation of signaling | GO:0023057 | 96 | 0.011 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 68 | 0.011 | |
| mitotic nuclear division | GO:0007067 | 18 | 0.011 | |
| regulation of cellular protein metabolic process | GO:0032268 | 52 | 0.011 | |
| regulation of hematopoietic progenitor cell differentiation | GO:1901532 | 1 | 0.011 | |
| response to corticosteroid | GO:0031960 | 1 | 0.011 | |
| response to external biotic stimulus | GO:0043207 | 97 | 0.010 | |
| oligodendrocyte differentiation | GO:0048709 | 23 | 0.010 | |
| wnt signaling pathway | GO:0016055 | 80 | 0.010 | |
| organelle assembly | GO:0070925 | 110 | 0.010 | |
| positive regulation of cytokine production | GO:0001819 | 2 | 0.010 | |
| heart morphogenesis | GO:0003007 | 156 | 0.010 | |
| meiosis i | GO:0007127 | 1 | 0.010 | |
| negative regulation of neuron projection regeneration | GO:0070571 | 4 | 0.010 | |
| cell surface receptor signaling pathway | GO:0007166 | 325 | 0.010 | |
| mitotic cell cycle process | GO:1903047 | 48 | 0.010 | |
| developmental maturation | GO:0021700 | 34 | 0.010 | |
| cellular response to starvation | GO:0009267 | 1 | 0.010 | |
