| chordate embryonic development | GO:0043009 | 271 | 0.827 | |
| embryonic skeletal system development | GO:0048706 | 97 | 0.673 | |
| skeletal system morphogenesis | GO:0048705 | 102 | 0.552 | |
| neuron differentiation | GO:0030182 | 353 | 0.523 | |
| chemical homeostasis | GO:0048878 | 49 | 0.352 | |
| embryonic skeletal system morphogenesis | GO:0048704 | 93 | 0.333 | |
| generation of neurons | GO:0048699 | 385 | 0.320 | |
| biosynthetic process | GO:0009058 | 294 | 0.291 | |
| cartilage development | GO:0051216 | 96 | 0.286 | |
| skeletal system development | GO:0001501 | 181 | 0.257 | |
| ion homeostasis | GO:0050801 | 41 | 0.242 | |
| embryonic organ morphogenesis | GO:0048562 | 274 | 0.241 | |
| digestive system development | GO:0055123 | 289 | 0.224 | |
| cation homeostasis | GO:0055080 | 33 | 0.217 | |
| embryonic viscerocranium morphogenesis | GO:0048703 | 52 | 0.215 | |
| golgi vesicle transport | GO:0048193 | 3 | 0.150 | |
| neural tube development | GO:0021915 | 62 | 0.132 | |
| lateral line development | GO:0048882 | 66 | 0.128 | |
| lateral line system development | GO:0048925 | 76 | 0.123 | |
| metal ion homeostasis | GO:0055065 | 26 | 0.117 | |
| connective tissue development | GO:0061448 | 99 | 0.113 | |
| organic substance biosynthetic process | GO:1901576 | 289 | 0.111 | |
| regulation of biological quality | GO:0065008 | 263 | 0.104 | |
| er to golgi vesicle mediated transport | GO:0006888 | 1 | 0.103 | |
| gastrulation | GO:0007369 | 208 | 0.100 | |
| cellular amino acid biosynthetic process | GO:0008652 | 2 | 0.097 | |
| pancreas development | GO:0031016 | 84 | 0.094 | |
| type b pancreatic cell development | GO:0003323 | 4 | 0.092 | |
| amino acid transport | GO:0006865 | 2 | 0.092 | |
| regulation of protein modification by small protein conjugation or removal | GO:1903320 | 3 | 0.087 | |
| cellular macromolecule metabolic process | GO:0044260 | 391 | 0.086 | |
| protein targeting to nucleus | GO:0044744 | 3 | 0.083 | |
| neuron projection development | GO:0031175 | 180 | 0.081 | |
| cation transport | GO:0006812 | 81 | 0.075 | |
| sensory system development | GO:0048880 | 76 | 0.075 | |
| cation transmembrane transport | GO:0098655 | 65 | 0.074 | |
| neuron development | GO:0048666 | 262 | 0.072 | |
| cellular component biogenesis | GO:0044085 | 178 | 0.072 | |
| actomyosin structure organization | GO:0031032 | 53 | 0.071 | |
| embryonic organ development | GO:0048568 | 381 | 0.070 | |
| extracellular matrix constituent secretion | GO:0070278 | 3 | 0.070 | |
| cellular macromolecule biosynthetic process | GO:0034645 | 224 | 0.068 | |
| inorganic ion transmembrane transport | GO:0098660 | 57 | 0.067 | |
| single organism nuclear import | GO:1902593 | 3 | 0.066 | |
| endocrine system development | GO:0035270 | 65 | 0.064 | |
| metal ion transport | GO:0030001 | 58 | 0.059 | |
| ion transport | GO:0006811 | 114 | 0.058 | |
| endocrine pancreas development | GO:0031018 | 27 | 0.057 | |
| organic cyclic compound biosynthetic process | GO:1901362 | 223 | 0.057 | |
| response to ketone | GO:1901654 | 1 | 0.057 | |
| regulation of cell matrix adhesion | GO:0001952 | 1 | 0.057 | |
| establishment of localization in cell | GO:0051649 | 77 | 0.054 | |
| larval development | GO:0002164 | 2 | 0.054 | |
| collagen biosynthetic process | GO:0032964 | 2 | 0.054 | |
| regulation of carbohydrate metabolic process | GO:0006109 | 4 | 0.053 | |
| immune system development | GO:0002520 | 191 | 0.052 | |
| cell migration | GO:0016477 | 237 | 0.051 | |
| maintenance of location | GO:0051235 | 4 | 0.051 | |
| cell part morphogenesis | GO:0032990 | 246 | 0.051 | |
| camera type eye morphogenesis | GO:0048593 | 108 | 0.051 | |
| wnt signaling pathway | GO:0016055 | 80 | 0.050 | |
| hormone transport | GO:0009914 | 2 | 0.049 | |
| fin morphogenesis | GO:0033334 | 53 | 0.049 | |
| system process | GO:0003008 | 185 | 0.047 | |
| development of primary female sexual characteristics | GO:0046545 | 4 | 0.047 | |
| hormone secretion | GO:0046879 | 2 | 0.046 | |
| macromolecule biosynthetic process | GO:0009059 | 227 | 0.046 | |
| regulation of wnt signaling pathway | GO:0030111 | 53 | 0.045 | |
| response to abiotic stimulus | GO:0009628 | 122 | 0.044 | |
| negative regulation of sequestering of calcium ion | GO:0051283 | 4 | 0.044 | |
| fin development | GO:0033333 | 77 | 0.043 | |
| nitrogen compound metabolic process | GO:0006807 | 319 | 0.043 | |
| mechanosensory lateral line system development | GO:0048881 | 49 | 0.043 | |
| positive regulation of cytosolic calcium ion concentration | GO:0007204 | 4 | 0.041 | |
| transport | GO:0006810 | 220 | 0.041 | |
| regulation of cytoplasmic transport | GO:1903649 | 4 | 0.040 | |
| cell projection morphogenesis | GO:0048858 | 244 | 0.039 | |
| regulation of metal ion transport | GO:0010959 | 4 | 0.038 | |
| negative regulation of cellular process | GO:0048523 | 283 | 0.037 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 3 | 0.037 | |
| glucose homeostasis | GO:0042593 | 1 | 0.037 | |
| response to osmotic stress | GO:0006970 | 11 | 0.036 | |
| negative regulation of biological process | GO:0048519 | 304 | 0.035 | |
| intestinal epithelial cell differentiation | GO:0060575 | 3 | 0.034 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 271 | 0.034 | |
| protein localization to nucleus | GO:0034504 | 3 | 0.034 | |
| embryonic cranial skeleton morphogenesis | GO:0048701 | 90 | 0.033 | |
| negative regulation of cell communication | GO:0010648 | 96 | 0.033 | |
| taxis | GO:0042330 | 109 | 0.033 | |
| establishment of protein localization to organelle | GO:0072594 | 4 | 0.032 | |
| axon development | GO:0061564 | 166 | 0.031 | |
| convergent extension involved in gastrulation | GO:0060027 | 71 | 0.031 | |
| cellular nitrogen compound metabolic process | GO:0034641 | 290 | 0.031 | |
| regulation of transcription involved in cell fate commitment | GO:0060850 | 1 | 0.031 | |
| peptide transport | GO:0015833 | 1 | 0.030 | |
| cell substrate adhesion | GO:0031589 | 4 | 0.030 | |
| morphogenesis of embryonic epithelium | GO:0016331 | 30 | 0.030 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 3 | 0.029 | |
| negative regulation of dna metabolic process | GO:0051053 | 4 | 0.029 | |
| regulation of sequestering of calcium ion | GO:0051282 | 4 | 0.029 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 45 | 0.029 | |
| sequestering of calcium ion | GO:0051208 | 3 | 0.029 | |
| regulation of localization | GO:0032879 | 104 | 0.029 | |
| calcium ion transport | GO:0006816 | 18 | 0.028 | |
| negative regulation of cytoplasmic transport | GO:1903650 | 2 | 0.028 | |
| regulation of blood vessel size | GO:0050880 | 2 | 0.028 | |
| rna biosynthetic process | GO:0032774 | 181 | 0.027 | |
| positive regulation of cell substrate adhesion | GO:0010811 | 1 | 0.027 | |
| l amino acid transport | GO:0015807 | 1 | 0.027 | |
| cellular response to oxygen levels | GO:0071453 | 1 | 0.027 | |
| tube morphogenesis | GO:0035239 | 349 | 0.026 | |
| calcium ion import | GO:0070509 | 4 | 0.025 | |
| response to glucose | GO:0009749 | 3 | 0.025 | |
| response to external stimulus | GO:0009605 | 264 | 0.025 | |
| cell matrix adhesion | GO:0007160 | 4 | 0.025 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 43 | 0.024 | |
| digestive tract development | GO:0048565 | 265 | 0.024 | |
| embryonic digestive tract development | GO:0048566 | 4 | 0.024 | |
| regulation of binding | GO:0051098 | 3 | 0.024 | |
| visual behavior | GO:0007632 | 10 | 0.023 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 59 | 0.023 | |
| cellular protein catabolic process | GO:0044257 | 4 | 0.023 | |
| collagen metabolic process | GO:0032963 | 2 | 0.023 | |
| central nervous system neuron differentiation | GO:0021953 | 74 | 0.023 | |
| regulation of cellular carbohydrate metabolic process | GO:0010675 | 4 | 0.023 | |
| cell projection organization | GO:0030030 | 284 | 0.023 | |
| regulation of cell substrate adhesion | GO:0010810 | 1 | 0.023 | |
| sensory perception of chemical stimulus | GO:0007606 | 3 | 0.023 | |
| negative regulation of biosynthetic process | GO:0009890 | 55 | 0.023 | |
| regulation of protein localization to nucleus | GO:1900180 | 2 | 0.022 | |
| protein import | GO:0017038 | 3 | 0.022 | |
| regulation of nitrogen compound metabolic process | GO:0051171 | 251 | 0.022 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 55 | 0.022 | |
| homeostatic process | GO:0042592 | 142 | 0.022 | |
| positive regulation of neural precursor cell proliferation | GO:2000179 | 1 | 0.022 | |
| negative regulation of signaling | GO:0023057 | 96 | 0.021 | |
| sodium ion transmembrane transport | GO:0035725 | 21 | 0.021 | |
| nuclear import | GO:0051170 | 3 | 0.021 | |
| single organism biosynthetic process | GO:0044711 | 71 | 0.021 | |
| nucleic acid templated transcription | GO:0097659 | 181 | 0.021 | |
| cell differentiation in spinal cord | GO:0021515 | 40 | 0.021 | |
| locomotion | GO:0040011 | 313 | 0.021 | |
| nucleic acid metabolic process | GO:0090304 | 244 | 0.020 | |
| regulation of tube size | GO:0035150 | 2 | 0.020 | |
| cell substrate junction assembly | GO:0007044 | 2 | 0.020 | |
| regulation of protein ubiquitination | GO:0031396 | 3 | 0.020 | |
| cell proliferation | GO:0008283 | 80 | 0.020 | |
| central nervous system development | GO:0007417 | 387 | 0.020 | |
| regulation of neural precursor cell proliferation | GO:2000177 | 3 | 0.019 | |
| regulation of nucleic acid templated transcription | GO:1903506 | 213 | 0.019 | |
| axonal defasciculation | GO:0007414 | 2 | 0.019 | |
| protein import into nucleus | GO:0006606 | 3 | 0.019 | |
| iron ion homeostasis | GO:0055072 | 4 | 0.019 | |
| optomotor response | GO:0071632 | 1 | 0.019 | |
| cardiac cell development | GO:0055006 | 21 | 0.019 | |
| brain development | GO:0007420 | 293 | 0.019 | |
| regulation of locomotion | GO:0040012 | 55 | 0.019 | |
| forebrain neuron fate commitment | GO:0021877 | 1 | 0.019 | |
| ion transmembrane transport | GO:0034220 | 91 | 0.019 | |
| cellular response to nutrient levels | GO:0031669 | 2 | 0.018 | |
| neuron neuron synaptic transmission | GO:0007270 | 1 | 0.018 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 48 | 0.018 | |
| neural tube formation | GO:0001841 | 16 | 0.018 | |
| positive regulation of epithelial cell differentiation | GO:0030858 | 2 | 0.018 | |
| cell cell signaling | GO:0007267 | 52 | 0.018 | |
| small molecule metabolic process | GO:0044281 | 77 | 0.018 | |
| multicellular organismal macromolecule metabolic process | GO:0044259 | 2 | 0.018 | |
| nucleocytoplasmic transport | GO:0006913 | 4 | 0.018 | |
| divalent inorganic cation transport | GO:0072511 | 21 | 0.018 | |
| transmembrane transport | GO:0055085 | 120 | 0.018 | |
| cartilage development involved in endochondral bone morphogenesis | GO:0060351 | 8 | 0.018 | |
| negative regulation of dna replication | GO:0008156 | 2 | 0.018 | |
| medial fin morphogenesis | GO:0035141 | 14 | 0.018 | |
| sodium ion import | GO:0097369 | 3 | 0.018 | |
| organic substance transport | GO:0071702 | 58 | 0.017 | |
| cellular biosynthetic process | GO:0044249 | 286 | 0.017 | |
| calcium ion transport into cytosol | GO:0060402 | 3 | 0.017 | |
| androgen biosynthetic process | GO:0006702 | 1 | 0.017 | |
| convergent extension | GO:0060026 | 118 | 0.017 | |
| regulation of protein import into nucleus | GO:0042306 | 2 | 0.017 | |
| morphogenesis of an epithelium | GO:0002009 | 333 | 0.017 | |
| heterocycle biosynthetic process | GO:0018130 | 215 | 0.017 | |
| regulation of transcription dna templated | GO:0006355 | 213 | 0.017 | |
| protein metabolic process | GO:0019538 | 183 | 0.017 | |
| aging | GO:0007568 | 2 | 0.017 | |
| androgen metabolic process | GO:0008209 | 2 | 0.017 | |
| neuromast deposition | GO:0048885 | 9 | 0.016 | |
| regulation of multicellular organism growth | GO:0040014 | 4 | 0.016 | |
| monocarboxylic acid catabolic process | GO:0072329 | 3 | 0.016 | |
| divalent inorganic anion homeostasis | GO:0072505 | 5 | 0.016 | |
| pectoral fin development | GO:0033339 | 50 | 0.016 | |
| extracellular structure organization | GO:0043062 | 27 | 0.016 | |
| localization within membrane | GO:0051668 | 1 | 0.015 | |
| negative regulation of metabolic process | GO:0009892 | 86 | 0.015 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 59 | 0.015 | |
| rna metabolic process | GO:0016070 | 219 | 0.015 | |
| single organism behavior | GO:0044708 | 24 | 0.015 | |
| regulation of developmental process | GO:0050793 | 247 | 0.015 | |
| response to corticosteroid | GO:0031960 | 1 | 0.015 | |
| positive regulation of cell adhesion | GO:0045785 | 1 | 0.015 | |
| pyruvate metabolic process | GO:0006090 | 1 | 0.015 | |
| divalent inorganic cation homeostasis | GO:0072507 | 22 | 0.015 | |
| positive regulation of catabolic process | GO:0009896 | 4 | 0.015 | |
| oxoacid metabolic process | GO:0043436 | 31 | 0.015 | |
| cellular response to extracellular stimulus | GO:0031668 | 2 | 0.014 | |
| cell aggregation | GO:0098743 | 3 | 0.014 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 3 | 0.014 | |
| cytoskeleton organization | GO:0007010 | 96 | 0.014 | |
| regulation of homeostatic process | GO:0032844 | 9 | 0.014 | |
| cellular metal ion homeostasis | GO:0006875 | 16 | 0.014 | |
| regulation of embryonic development | GO:0045995 | 47 | 0.014 | |
| angiogenesis | GO:0001525 | 158 | 0.014 | |
| cellular carbohydrate metabolic process | GO:0044262 | 4 | 0.013 | |
| cellular response to decreased oxygen levels | GO:0036294 | 1 | 0.013 | |
| appendage morphogenesis | GO:0035107 | 56 | 0.013 | |
| sequestering of metal ion | GO:0051238 | 3 | 0.013 | |
| neutral amino acid transport | GO:0015804 | 2 | 0.013 | |
| regulation of metabolic process | GO:0019222 | 359 | 0.013 | |
| carbohydrate homeostasis | GO:0033500 | 1 | 0.013 | |
| response to alkaloid | GO:0043279 | 2 | 0.013 | |
| head development | GO:0060322 | 303 | 0.013 | |
| steroid hormone mediated signaling pathway | GO:0043401 | 9 | 0.013 | |
| carbohydrate metabolic process | GO:0005975 | 12 | 0.013 | |
| bone mineralization | GO:0030282 | 9 | 0.013 | |
| chondroitin sulfate metabolic process | GO:0030204 | 2 | 0.013 | |
| inorganic cation transmembrane transport | GO:0098662 | 50 | 0.013 | |
| nitrogen compound transport | GO:0071705 | 23 | 0.012 | |
| neurological system process | GO:0050877 | 62 | 0.012 | |
| regulation of meiotic cell cycle | GO:0051445 | 1 | 0.012 | |
| negative regulation of cellular metabolic process | GO:0031324 | 77 | 0.012 | |
| growth plate cartilage development | GO:0003417 | 2 | 0.012 | |
| hatching | GO:0035188 | 4 | 0.012 | |
| cytokinesis | GO:0000910 | 3 | 0.012 | |
| sensory perception | GO:0007600 | 39 | 0.012 | |
| regulation of gastrulation | GO:0010470 | 24 | 0.012 | |
| regulation of protein binding | GO:0043393 | 3 | 0.012 | |
| endochondral bone growth | GO:0003416 | 2 | 0.012 | |
| regulation of dna replication | GO:0006275 | 3 | 0.012 | |
| multicellular organismal metabolic process | GO:0044236 | 2 | 0.012 | |
| cranial suture morphogenesis | GO:0060363 | 1 | 0.012 | |
| positive regulation of secretion | GO:0051047 | 1 | 0.012 | |
| cytosolic calcium ion transport | GO:0060401 | 3 | 0.012 | |
| negative regulation of transcription dna templated | GO:0045892 | 45 | 0.012 | |
| response to nutrient | GO:0007584 | 3 | 0.012 | |
| regulation of carbohydrate biosynthetic process | GO:0043255 | 1 | 0.012 | |
| cellular response to chemical stimulus | GO:0070887 | 157 | 0.012 | |
| biomineral tissue development | GO:0031214 | 13 | 0.012 | |
| neurotransmitter transport | GO:0006836 | 2 | 0.012 | |
| regulation of biosynthetic process | GO:0009889 | 250 | 0.012 | |
| embryonic neurocranium morphogenesis | GO:0048702 | 15 | 0.011 | |
| digestive tract mesoderm development | GO:0007502 | 1 | 0.011 | |
| muscle cell development | GO:0055001 | 115 | 0.011 | |
| nucleobase containing compound biosynthetic process | GO:0034654 | 205 | 0.011 | |
| cartilage condensation | GO:0001502 | 3 | 0.011 | |
| negative regulation of tor signaling | GO:0032007 | 2 | 0.011 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 107 | 0.011 | |
| membrane lipid biosynthetic process | GO:0046467 | 2 | 0.011 | |
| glycoprotein biosynthetic process | GO:0009101 | 21 | 0.011 | |
| cellular response to starvation | GO:0009267 | 1 | 0.011 | |
| cell morphogenesis involved in differentiation | GO:0000904 | 195 | 0.011 | |
| regulation of chondrocyte differentiation | GO:0032330 | 1 | 0.011 | |
| collagen fibril organization | GO:0030199 | 1 | 0.011 | |
| regulation of calcium ion transport | GO:0051924 | 2 | 0.011 | |
| regulation of intracellular protein transport | GO:0033157 | 3 | 0.011 | |
| common bile duct development | GO:0061009 | 13 | 0.011 | |
| sensory organ development | GO:0007423 | 393 | 0.010 | |
| epiboly | GO:0090504 | 41 | 0.010 | |
| digestive tract morphogenesis | GO:0048546 | 231 | 0.010 | |
| intracellular transport | GO:0046907 | 32 | 0.010 | |
| positive regulation of cell differentiation | GO:0045597 | 30 | 0.010 | |
| endoplasmic reticulum organization | GO:0007029 | 3 | 0.010 | |
| epithelial cell morphogenesis | GO:0003382 | 2 | 0.010 | |
| cytoplasmic transport | GO:0016482 | 11 | 0.010 | |
