| golgi vesicle transport | GO:0048193 | 3 | 0.837 | Yeast Rat |
| er to golgi vesicle mediated transport | GO:0006888 | 1 | 0.778 | Yeast Rat |
| nitrogen compound metabolic process | GO:0006807 | 319 | 0.523 | Yeast |
| digestive tract development | GO:0048565 | 265 | 0.393 | |
| sulfur compound metabolic process | GO:0006790 | 13 | 0.335 | |
| digestive system development | GO:0055123 | 289 | 0.290 | |
| protein targeting to nucleus | GO:0044744 | 3 | 0.272 | Fly |
| pancreas development | GO:0031016 | 84 | 0.267 | |
| cellular modified amino acid metabolic process | GO:0006575 | 3 | 0.265 | |
| heparan sulfate proteoglycan metabolic process | GO:0030201 | 6 | 0.210 | |
| hepaticobiliary system development | GO:0061008 | 98 | 0.205 | |
| ribosome assembly | GO:0042255 | 1 | 0.201 | |
| chordate embryonic development | GO:0043009 | 271 | 0.182 | |
| small molecule metabolic process | GO:0044281 | 77 | 0.182 | Yeast |
| cellular biosynthetic process | GO:0044249 | 286 | 0.176 | Yeast |
| skeletal system development | GO:0001501 | 181 | 0.163 | |
| single organism biosynthetic process | GO:0044711 | 71 | 0.151 | |
| regulation of embryonic development | GO:0045995 | 47 | 0.148 | |
| localization within membrane | GO:0051668 | 1 | 0.139 | Yeast |
| single organism transport | GO:0044765 | 206 | 0.133 | |
| single organism intracellular transport | GO:1902582 | 25 | 0.125 | Yeast Rat Fly |
| larval development | GO:0002164 | 2 | 0.107 | Worm Fly |
| oxoacid metabolic process | GO:0043436 | 31 | 0.103 | |
| digestive tract morphogenesis | GO:0048546 | 231 | 0.103 | |
| specification of axis polarity | GO:0065001 | 4 | 0.101 | |
| organic acid metabolic process | GO:0006082 | 31 | 0.098 | |
| intracellular transport | GO:0046907 | 32 | 0.093 | Yeast Rat Fly |
| protein localization to nucleus | GO:0034504 | 3 | 0.091 | Fly |
| alpha amino acid metabolic process | GO:1901605 | 3 | 0.086 | |
| glycosaminoglycan biosynthetic process | GO:0006024 | 8 | 0.076 | |
| biosynthetic process | GO:0009058 | 294 | 0.075 | Yeast |
| regulation of protein binding | GO:0043393 | 3 | 0.074 | |
| endocardium formation | GO:0060214 | 1 | 0.073 | |
| organonitrogen compound metabolic process | GO:1901564 | 74 | 0.072 | Yeast |
| organonitrogen compound biosynthetic process | GO:1901566 | 47 | 0.071 | |
| cellular macromolecule metabolic process | GO:0044260 | 391 | 0.064 | Yeast |
| protein localization | GO:0008104 | 40 | 0.058 | |
| maturation of ssu rrna | GO:0030490 | 1 | 0.058 | |
| heart development | GO:0007507 | 313 | 0.057 | |
| proteoglycan metabolic process | GO:0006029 | 14 | 0.055 | |
| nucleocytoplasmic transport | GO:0006913 | 4 | 0.055 | Fly |
| cytokinesis | GO:0000910 | 3 | 0.055 | Worm |
| chondroitin sulfate proteoglycan metabolic process | GO:0050654 | 8 | 0.055 | |
| nucleobase containing compound biosynthetic process | GO:0034654 | 205 | 0.054 | Yeast |
| protein import | GO:0017038 | 3 | 0.054 | Fly |
| vesicle localization | GO:0051648 | 27 | 0.051 | |
| glycoprotein biosynthetic process | GO:0009101 | 21 | 0.046 | |
| determination of left right symmetry | GO:0007368 | 179 | 0.046 | |
| heterocycle metabolic process | GO:0046483 | 290 | 0.044 | Yeast |
| cellular component morphogenesis | GO:0032989 | 336 | 0.042 | |
| regulation of multicellular organism growth | GO:0040014 | 4 | 0.040 | |
| establishment of protein localization to organelle | GO:0072594 | 4 | 0.040 | Fly |
| transmembrane transport | GO:0055085 | 120 | 0.040 | |
| protein depolymerization | GO:0051261 | 1 | 0.039 | |
| gene expression | GO:0010467 | 252 | 0.039 | Yeast Fly |
| glycoprotein metabolic process | GO:0009100 | 23 | 0.039 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 2 | 0.038 | Yeast |
| erythrocyte development | GO:0048821 | 24 | 0.037 | |
| regulation of cellular amine metabolic process | GO:0033238 | 0 | 0.036 | |
| single organism metabolic process | GO:0044710 | 217 | 0.036 | Yeast |
| embryonic digestive tract morphogenesis | GO:0048557 | 3 | 0.036 | |
| embryonic cranial skeleton morphogenesis | GO:0048701 | 90 | 0.035 | |
| proximal distal pattern formation | GO:0009954 | 1 | 0.035 | |
| carbohydrate homeostasis | GO:0033500 | 1 | 0.034 | |
| regulation of biological quality | GO:0065008 | 263 | 0.034 | |
| peptide metabolic process | GO:0006518 | 1 | 0.034 | |
| regulation of cytoplasmic transport | GO:1903649 | 4 | 0.033 | |
| extracellular structure organization | GO:0043062 | 27 | 0.033 | |
| establishment of localization in cell | GO:0051649 | 77 | 0.033 | |
| cellular macromolecular complex assembly | GO:0034622 | 24 | 0.033 | |
| regulation of binding | GO:0051098 | 3 | 0.033 | |
| forebrain regionalization | GO:0021871 | 4 | 0.032 | |
| response to stress | GO:0006950 | 263 | 0.032 | |
| gastrulation | GO:0007369 | 208 | 0.032 | |
| embryo development ending in birth or egg hatching | GO:0009792 | 271 | 0.032 | Worm |
| cellular nitrogen compound metabolic process | GO:0034641 | 290 | 0.031 | Yeast |
| negative regulation of cellular catabolic process | GO:0031330 | 3 | 0.031 | |
| hydrogen peroxide metabolic process | GO:0042743 | 2 | 0.031 | |
| double strand break repair | GO:0006302 | 3 | 0.031 | |
| myeloid cell development | GO:0061515 | 32 | 0.029 | |
| pronuclear migration | GO:0035046 | 1 | 0.029 | |
| response to chemical | GO:0042221 | 320 | 0.029 | |
| single organism membrane organization | GO:0044802 | 20 | 0.029 | Yeast |
| nuclear import | GO:0051170 | 3 | 0.028 | Fly |
| response to other organism | GO:0051707 | 97 | 0.028 | |
| aminoglycan biosynthetic process | GO:0006023 | 8 | 0.027 | |
| transport | GO:0006810 | 220 | 0.027 | |
| autophagy | GO:0006914 | 4 | 0.027 | |
| regulation of cellular macromolecule biosynthetic process | GO:2000112 | 222 | 0.027 | Yeast |
| negative regulation of sequence specific dna binding transcription factor activity | GO:0043433 | 2 | 0.026 | |
| response to external biotic stimulus | GO:0043207 | 97 | 0.026 | |
| carbohydrate derivative metabolic process | GO:1901135 | 61 | 0.026 | Yeast |
| regulation of nitrogen compound metabolic process | GO:0051171 | 251 | 0.026 | Yeast |
| carboxylic acid metabolic process | GO:0019752 | 22 | 0.026 | |
| epithelial cell morphogenesis | GO:0003382 | 2 | 0.025 | |
| inner ear development | GO:0048839 | 126 | 0.025 | |
| ectodermal placode development | GO:0071696 | 37 | 0.025 | |
| organelle assembly | GO:0070925 | 110 | 0.025 | |
| cell surface receptor signaling pathway | GO:0007166 | 325 | 0.025 | Fly |
| neural tube patterning | GO:0021532 | 33 | 0.025 | |
| embryonic neurocranium morphogenesis | GO:0048702 | 15 | 0.024 | |
| negative regulation of catabolic process | GO:0009895 | 3 | 0.024 | |
| mitotic g2 dna damage checkpoint | GO:0007095 | 3 | 0.024 | |
| embryonic skeletal system morphogenesis | GO:0048704 | 93 | 0.024 | |
| neuroblast fate commitment | GO:0014017 | 1 | 0.024 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 4 | 0.024 | |
| multicellular organism growth | GO:0035264 | 4 | 0.023 | |
| gland development | GO:0048732 | 143 | 0.023 | |
| protein import into nucleus | GO:0006606 | 3 | 0.023 | Fly |
| exocrine pancreas development | GO:0031017 | 28 | 0.023 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 3 | 0.023 | Worm |
| amine metabolic process | GO:0009308 | 2 | 0.022 | |
| response to biotic stimulus | GO:0009607 | 97 | 0.022 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 4 | 0.022 | |
| response to antibiotic | GO:0046677 | 1 | 0.021 | |
| regulation of cell proliferation involved in tissue homeostasis | GO:0060784 | 2 | 0.021 | |
| cellular macromolecule biosynthetic process | GO:0034645 | 224 | 0.020 | Yeast |
| reflex | GO:0060004 | 2 | 0.020 | |
| olfactory placode development | GO:0071698 | 12 | 0.020 | |
| cellular amino acid metabolic process | GO:0006520 | 7 | 0.019 | |
| protein targeting to membrane | GO:0006612 | 1 | 0.019 | |
| pyruvate metabolic process | GO:0006090 | 1 | 0.019 | |
| regulation of autophagy | GO:0010506 | 3 | 0.019 | |
| cellular amide metabolic process | GO:0043603 | 4 | 0.019 | |
| mucopolysaccharide metabolic process | GO:1903510 | 2 | 0.018 | |
| cell part morphogenesis | GO:0032990 | 246 | 0.018 | |
| central nervous system development | GO:0007417 | 387 | 0.018 | |
| mitotic cell cycle | GO:0000278 | 64 | 0.018 | Worm |
| positive regulation of oligodendrocyte differentiation | GO:0048714 | 1 | 0.018 | |
| glycosaminoglycan metabolic process | GO:0030203 | 9 | 0.018 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 43 | 0.018 | |
| dicarboxylic acid transport | GO:0006835 | 1 | 0.017 | |
| g2 dna damage checkpoint | GO:0031572 | 3 | 0.017 | |
| optic placode formation involved in camera type eye formation | GO:0046619 | 3 | 0.017 | |
| midbrain development | GO:0030901 | 28 | 0.017 | |
| specification of symmetry | GO:0009799 | 204 | 0.017 | |
| embryonic skeletal system development | GO:0048706 | 97 | 0.017 | |
| cellular aromatic compound metabolic process | GO:0006725 | 295 | 0.017 | Yeast |
| regulation of establishment of protein localization | GO:0070201 | 4 | 0.016 | |
| gene silencing by rna | GO:0031047 | 4 | 0.016 | |
| peptide transport | GO:0015833 | 1 | 0.016 | |
| regulation of growth rate | GO:0040009 | 1 | 0.016 | |
| mitotic dna damage checkpoint | GO:0044773 | 4 | 0.016 | |
| regulation of multicellular organismal process | GO:0051239 | 277 | 0.016 | |
| posttranscriptional gene silencing by rna | GO:0035194 | 3 | 0.016 | |
| dorsal ventral neural tube patterning | GO:0021904 | 1 | 0.016 | |
| glucose homeostasis | GO:0042593 | 1 | 0.016 | |
| maintenance of location | GO:0051235 | 4 | 0.016 | |
| interspecies interaction between organisms | GO:0044419 | 4 | 0.015 | |
| negative regulation of metabolic process | GO:0009892 | 86 | 0.015 | Fly |
| nucleic acid metabolic process | GO:0090304 | 244 | 0.015 | Yeast |
| hormone secretion | GO:0046879 | 2 | 0.015 | |
| lateral line development | GO:0048882 | 66 | 0.015 | |
| embryonic organ development | GO:0048568 | 381 | 0.015 | |
| regulation of nucleocytoplasmic transport | GO:0046822 | 2 | 0.015 | |
| sensory system development | GO:0048880 | 76 | 0.015 | |
| embryonic digestive tract development | GO:0048566 | 4 | 0.014 | |
| regulation of organelle assembly | GO:1902115 | 4 | 0.014 | |
| single organism cellular localization | GO:1902580 | 46 | 0.014 | Yeast Fly |
| carbohydrate metabolic process | GO:0005975 | 12 | 0.014 | |
| nuclear transport | GO:0051169 | 4 | 0.014 | Fly |
| extracellular matrix assembly | GO:0085029 | 1 | 0.014 | |
| regulation of cell projection assembly | GO:0060491 | 4 | 0.014 | |
| forebrain anterior posterior pattern specification | GO:0021797 | 3 | 0.014 | |
| spindle assembly involved in meiosis | GO:0090306 | 1 | 0.014 | |
| actin filament polymerization | GO:0030041 | 2 | 0.014 | |
| regulation of cell shape | GO:0008360 | 1 | 0.014 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 4 | 0.013 | |
| chromosome organization involved in meiosis | GO:0070192 | 1 | 0.013 | |
| golgi organization | GO:0007030 | 1 | 0.013 | |
| type b pancreatic cell development | GO:0003323 | 4 | 0.013 | |
| membrane hyperpolarization | GO:0060081 | 1 | 0.013 | |
| regulation of endothelial cell differentiation | GO:0045601 | 3 | 0.013 | |
| organic substance biosynthetic process | GO:1901576 | 289 | 0.013 | Yeast |
| positive regulation of transport | GO:0051050 | 2 | 0.013 | |
| eye photoreceptor cell differentiation | GO:0001754 | 45 | 0.013 | |
| nucleobase containing compound metabolic process | GO:0006139 | 274 | 0.013 | Yeast |
| centrosome organization | GO:0051297 | 1 | 0.013 | |
| ribonucleoprotein complex assembly | GO:0022618 | 5 | 0.013 | |
| regulation of dendrite morphogenesis | GO:0048814 | 3 | 0.013 | |
| inorganic cation transmembrane transport | GO:0098662 | 50 | 0.013 | |
| mitotic dna integrity checkpoint | GO:0044774 | 4 | 0.013 | |
| cellular ketone metabolic process | GO:0042180 | 11 | 0.012 | |
| receptor mediated endocytosis | GO:0006898 | 6 | 0.012 | Worm |
| cellular component movement | GO:0006928 | 335 | 0.012 | |
| histone deacetylation | GO:0016575 | 2 | 0.012 | |
| reactive oxygen species metabolic process | GO:0072593 | 6 | 0.012 | |
| reactive oxygen species biosynthetic process | GO:1903409 | 1 | 0.012 | |
| nuclear export | GO:0051168 | 1 | 0.012 | |
| regulation of fatty acid beta oxidation | GO:0031998 | 1 | 0.012 | |
| regulation of oligodendrocyte differentiation | GO:0048713 | 1 | 0.012 | |
| endomembrane system organization | GO:0010256 | 13 | 0.012 | |
| chondrocyte development | GO:0002063 | 4 | 0.012 | |
| regulation of heart growth | GO:0060420 | 2 | 0.012 | |
| apoptotic process | GO:0006915 | 116 | 0.012 | Worm |
| regulation of developmental process | GO:0050793 | 247 | 0.012 | |
| cell proliferation in dorsal spinal cord | GO:0010456 | 2 | 0.012 | |
| vesicle mediated transport | GO:0016192 | 22 | 0.012 | Yeast Rat Worm |
| retinal pigment epithelium development | GO:0003406 | 8 | 0.012 | |
| chondroitin sulfate proteoglycan biosynthetic process | GO:0050650 | 7 | 0.012 | |
| single organism nuclear import | GO:1902593 | 3 | 0.012 | Fly |
| protein polymerization | GO:0051258 | 4 | 0.012 | |
| embryonic viscerocranium morphogenesis | GO:0048703 | 52 | 0.012 | |
| dna biosynthetic process | GO:0071897 | 3 | 0.012 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 4 | 0.011 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 7 | 0.011 | |
| regulation of protein transport | GO:0051223 | 3 | 0.011 | |
| atp catabolic process | GO:0006200 | 4 | 0.011 | |
| membrane organization | GO:0061024 | 21 | 0.011 | Yeast |
| regulation of protein processing | GO:0070613 | 10 | 0.011 | |
| positive regulation of oocyte development | GO:0060282 | 1 | 0.011 | |
| single organism localization | GO:1902578 | 225 | 0.011 | |
| regulation of protein complex assembly | GO:0043254 | 3 | 0.011 | |
| membrane invagination | GO:0010324 | 1 | 0.011 | |
| spindle assembly involved in mitosis | GO:0090307 | 1 | 0.011 | |
| regulation of synaptic growth at neuromuscular junction | GO:0008582 | 1 | 0.011 | |
| pyrimidine containing compound metabolic process | GO:0072527 | 3 | 0.011 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 55 | 0.011 | |
| interaction with host | GO:0051701 | 4 | 0.011 | |
| enteroendocrine cell differentiation | GO:0035883 | 9 | 0.011 | |
| protein complex disassembly | GO:0043241 | 1 | 0.011 | |
| liver development | GO:0001889 | 96 | 0.011 | |
| neuron projection development | GO:0031175 | 180 | 0.010 | |
| cellular response to light stimulus | GO:0071482 | 4 | 0.010 | |
| regulation of protein depolymerization | GO:1901879 | 1 | 0.010 | |
| neural retina development | GO:0003407 | 49 | 0.010 | |
| cellular amine metabolic process | GO:0044106 | 2 | 0.010 | |
| protein acylation | GO:0043543 | 3 | 0.010 | |
| heme metabolic process | GO:0042168 | 9 | 0.010 | |
| er nucleus signaling pathway | GO:0006984 | 2 | 0.010 | |
| erythrocyte differentiation | GO:0030218 | 54 | 0.010 | |
| organic substance transport | GO:0071702 | 58 | 0.010 | |
| establishment of localization | GO:0051234 | 244 | 0.010 | |
