| modification dependent protein catabolic process | GO:0019941 | 3 | 0.441 | Yeast |
| modification dependent macromolecule catabolic process | GO:0043632 | 3 | 0.408 | Yeast |
| proteasomal protein catabolic process | GO:0010498 | 2 | 0.370 | Yeast |
| cellular protein complex assembly | GO:0043623 | 19 | 0.328 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 3 | 0.260 | Yeast |
| cellular macromolecule metabolic process | GO:0044260 | 391 | 0.257 | Yeast |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 2 | 0.250 | Yeast |
| embryo development ending in birth or egg hatching | GO:0009792 | 271 | 0.250 | Worm |
| cellular protein catabolic process | GO:0044257 | 4 | 0.248 | Yeast |
| positive regulation of cellular process | GO:0048522 | 201 | 0.181 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 3 | 0.144 | Yeast |
| organic cyclic compound biosynthetic process | GO:1901362 | 223 | 0.143 | |
| protein metabolic process | GO:0019538 | 183 | 0.136 | Yeast |
| aromatic compound biosynthetic process | GO:0019438 | 217 | 0.129 | |
| cellular component assembly | GO:0022607 | 170 | 0.124 | Fly |
| organic substance biosynthetic process | GO:1901576 | 289 | 0.120 | |
| cellular macromolecular complex assembly | GO:0034622 | 24 | 0.115 | |
| aging | GO:0007568 | 2 | 0.111 | |
| rna biosynthetic process | GO:0032774 | 181 | 0.110 | |
| larval development | GO:0002164 | 2 | 0.103 | Worm |
| single fertilization | GO:0007338 | 3 | 0.095 | |
| regulation of gene expression | GO:0010468 | 265 | 0.091 | |
| regulation of macromolecule biosynthetic process | GO:0010556 | 225 | 0.091 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 80 | 0.090 | |
| biosynthetic process | GO:0009058 | 294 | 0.088 | |
| cellular response to dna damage stimulus | GO:0006974 | 24 | 0.086 | |
| cellular macromolecule biosynthetic process | GO:0034645 | 224 | 0.085 | |
| regulation of macromolecule metabolic process | GO:0060255 | 317 | 0.076 | |
| macromolecule biosynthetic process | GO:0009059 | 227 | 0.075 | |
| regulation of cellular metabolic process | GO:0031323 | 320 | 0.075 | |
| regulation of protein complex assembly | GO:0043254 | 3 | 0.073 | |
| proteolysis | GO:0006508 | 38 | 0.072 | Yeast |
| protein polymerization | GO:0051258 | 4 | 0.071 | |
| nucleobase containing compound biosynthetic process | GO:0034654 | 205 | 0.071 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 4 | 0.070 | |
| transcription dna templated | GO:0006351 | 181 | 0.066 | |
| nucleic acid metabolic process | GO:0090304 | 244 | 0.065 | |
| cellular aromatic compound metabolic process | GO:0006725 | 295 | 0.063 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 4 | 0.060 | |
| cellular protein metabolic process | GO:0044267 | 129 | 0.059 | Yeast |
| nitrogen compound metabolic process | GO:0006807 | 319 | 0.059 | |
| heterocycle metabolic process | GO:0046483 | 290 | 0.059 | |
| response to stress | GO:0006950 | 263 | 0.058 | |
| regulation of rna biosynthetic process | GO:2001141 | 213 | 0.058 | |
| regulation of cellular macromolecule biosynthetic process | GO:2000112 | 222 | 0.058 | |
| regulation of proteolysis | GO:0030162 | 24 | 0.057 | |
| regulation of transcription dna templated | GO:0006355 | 213 | 0.056 | |
| regulation of binding | GO:0051098 | 3 | 0.055 | |
| gene expression | GO:0010467 | 252 | 0.054 | |
| heterocycle biosynthetic process | GO:0018130 | 215 | 0.054 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 4 | 0.054 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 4 | 0.054 | |
| nucleic acid templated transcription | GO:0097659 | 181 | 0.054 | |
| protein complex assembly | GO:0006461 | 30 | 0.052 | Fly |
| cellular biosynthetic process | GO:0044249 | 286 | 0.051 | |
| regulation of nucleic acid templated transcription | GO:1903506 | 213 | 0.050 | |
| establishment of protein localization to organelle | GO:0072594 | 4 | 0.049 | |
| macromolecular complex subunit organization | GO:0043933 | 74 | 0.048 | Fly |
| regulation of biological quality | GO:0065008 | 263 | 0.047 | |
| organic cyclic compound metabolic process | GO:1901360 | 301 | 0.046 | |
| atp catabolic process | GO:0006200 | 4 | 0.046 | |
| cellular response to stress | GO:0033554 | 62 | 0.045 | |
| rna metabolic process | GO:0016070 | 219 | 0.045 | |
| cellular component biogenesis | GO:0044085 | 178 | 0.045 | Fly |
| regulation of nitrogen compound metabolic process | GO:0051171 | 251 | 0.044 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 114 | 0.042 | |
| negative regulation of biological process | GO:0048519 | 304 | 0.042 | |
| signal transduction | GO:0007165 | 455 | 0.041 | |
| locomotion | GO:0040011 | 313 | 0.040 | |
| regulation of metabolic process | GO:0019222 | 359 | 0.039 | |
| nucleobase containing compound metabolic process | GO:0006139 | 274 | 0.038 | |
| cellular nitrogen compound metabolic process | GO:0034641 | 290 | 0.038 | |
| protein complex biogenesis | GO:0070271 | 30 | 0.037 | Fly |
| regulation of cellular biosynthetic process | GO:0031326 | 245 | 0.036 | |
| regulation of primary metabolic process | GO:0080090 | 311 | 0.036 | |
| cellular nitrogen compound biosynthetic process | GO:0044271 | 218 | 0.035 | |
| mitotic dna integrity checkpoint | GO:0044774 | 4 | 0.034 | |
| positive regulation of protein complex assembly | GO:0031334 | 2 | 0.034 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 3 | 0.031 | |
| regulation of rna metabolic process | GO:0051252 | 224 | 0.031 | |
| regulation of protein ubiquitination | GO:0031396 | 3 | 0.029 | |
| cell projection morphogenesis | GO:0048858 | 244 | 0.029 | |
| dna templated transcription initiation | GO:0006352 | 1 | 0.029 | |
| embryonic organ development | GO:0048568 | 381 | 0.028 | |
| chordate embryonic development | GO:0043009 | 271 | 0.028 | |
| regulation of protein modification by small protein conjugation or removal | GO:1903320 | 3 | 0.028 | |
| fertilization | GO:0009566 | 3 | 0.026 | |
| negative regulation of cellular process | GO:0048523 | 283 | 0.026 | |
| amine metabolic process | GO:0009308 | 2 | 0.025 | |
| regulation of protein transport | GO:0051223 | 3 | 0.025 | |
| meiotic cell cycle process | GO:1903046 | 3 | 0.025 | |
| regulation of nucleobase containing compound metabolic process | GO:0019219 | 250 | 0.025 | |
| positive regulation of catabolic process | GO:0009896 | 4 | 0.025 | |
| golgi vesicle transport | GO:0048193 | 3 | 0.025 | |
| meiotic nuclear division | GO:0007126 | 4 | 0.025 | |
| protein localization to nucleus | GO:0034504 | 3 | 0.024 | |
| protein acylation | GO:0043543 | 3 | 0.024 | |
| nuclear import | GO:0051170 | 3 | 0.024 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 93 | 0.023 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 3 | 0.023 | |
| cell morphogenesis | GO:0000902 | 289 | 0.023 | |
| immune system process | GO:0002376 | 241 | 0.023 | |
| regulation of apoptotic process | GO:0042981 | 98 | 0.022 | |
| transport | GO:0006810 | 220 | 0.022 | |
| phosphate containing compound metabolic process | GO:0006796 | 108 | 0.022 | |
| single organism nuclear import | GO:1902593 | 3 | 0.022 | |
| regulation of cell communication | GO:0010646 | 232 | 0.021 | |
| cell part morphogenesis | GO:0032990 | 246 | 0.021 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 3 | 0.021 | |
| regulation of biosynthetic process | GO:0009889 | 250 | 0.020 | |
| pronuclear migration | GO:0035046 | 1 | 0.020 | |
| positive regulation of metabolic process | GO:0009893 | 108 | 0.020 | |
| cellular catabolic process | GO:0044248 | 27 | 0.020 | Yeast |
| translational initiation | GO:0006413 | 3 | 0.020 | |
| protein targeting to nucleus | GO:0044744 | 3 | 0.019 | |
| regulation of molecular function | GO:0065009 | 70 | 0.018 | |
| cellular component morphogenesis | GO:0032989 | 336 | 0.018 | |
| regulation of inflammatory response | GO:0050727 | 2 | 0.018 | |
| mitochondrion organization | GO:0007005 | 4 | 0.018 | |
| mitotic dna damage checkpoint | GO:0044773 | 4 | 0.018 | |
| regulation of translational initiation | GO:0006446 | 1 | 0.018 | |
| apoptotic process | GO:0006915 | 116 | 0.018 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 68 | 0.018 | |
| regulation of response to stimulus | GO:0048583 | 269 | 0.018 | |
| meiotic chromosome segregation | GO:0045132 | 3 | 0.018 | |
| mitotic g2 dna damage checkpoint | GO:0007095 | 3 | 0.018 | |
| protein targeting to vacuole | GO:0006623 | 1 | 0.017 | |
| dna templated transcription elongation | GO:0006354 | 3 | 0.017 | |
| negative regulation of protein transport | GO:0051224 | 3 | 0.017 | |
| maintenance of location | GO:0051235 | 4 | 0.017 | |
| regulation of cellular protein metabolic process | GO:0032268 | 52 | 0.016 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 57 | 0.016 | |
| nucleocytoplasmic transport | GO:0006913 | 4 | 0.016 | |
| peptidyl serine phosphorylation | GO:0018105 | 1 | 0.016 | |
| positive regulation of cell cycle | GO:0045787 | 3 | 0.016 | |
| cellular amine metabolic process | GO:0044106 | 2 | 0.016 | |
| regulation of endopeptidase activity | GO:0052548 | 23 | 0.016 | |
| organic substance catabolic process | GO:1901575 | 28 | 0.015 | Yeast |
| regulation of nucleocytoplasmic transport | GO:0046822 | 2 | 0.015 | |
| multicellular organism growth | GO:0035264 | 4 | 0.015 | |
| regulation of protein metabolic process | GO:0051246 | 56 | 0.015 | |
| embryonic skeletal system morphogenesis | GO:0048704 | 93 | 0.015 | |
| hatching | GO:0035188 | 4 | 0.015 | |
| regulation of cellular amine metabolic process | GO:0033238 | 0 | 0.015 | |
| single organism metabolic process | GO:0044710 | 217 | 0.015 | |
| regulation of protein localization to nucleus | GO:1900180 | 2 | 0.015 | |
| cell cycle g1 s phase transition | GO:0044843 | 1 | 0.015 | |
| peptidyl serine modification | GO:0018209 | 2 | 0.015 | |
| positive regulation of cellular metabolic process | GO:0031325 | 94 | 0.014 | |
| organelle organization | GO:0006996 | 227 | 0.014 | Fly |
| positive regulation of biological process | GO:0048518 | 253 | 0.014 | |
| cell death in response to oxidative stress | GO:0036473 | 2 | 0.014 | |
| regulation of signal transduction | GO:0009966 | 225 | 0.014 | |
| macromolecular complex assembly | GO:0065003 | 35 | 0.014 | Fly |
| nuclear transport | GO:0051169 | 4 | 0.014 | |
| negative regulation of response to stimulus | GO:0048585 | 104 | 0.014 | |
| organonitrogen compound metabolic process | GO:1901564 | 74 | 0.014 | |
| regulation of protein catabolic process | GO:0042176 | 1 | 0.014 | |
| regulation of protein import into nucleus | GO:0042306 | 2 | 0.014 | |
| protein secretion | GO:0009306 | 1 | 0.013 | |
| negative regulation of intracellular transport | GO:0032387 | 3 | 0.013 | |
| cell projection organization | GO:0030030 | 284 | 0.013 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.013 | |
| embryonic cranial skeleton morphogenesis | GO:0048701 | 90 | 0.013 | |
| purine nucleotide metabolic process | GO:0006163 | 27 | 0.013 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 1 | 0.013 | |
| regulation of programmed cell death | GO:0043067 | 101 | 0.013 | |
| neuron differentiation | GO:0030182 | 353 | 0.013 | |
| phosphorus metabolic process | GO:0006793 | 109 | 0.013 | |
| regulation of dna templated transcription elongation | GO:0032784 | 3 | 0.013 | |
| catabolic process | GO:0009056 | 32 | 0.013 | Yeast |
| protein stabilization | GO:0050821 | 2 | 0.013 | |
| positive regulation of transcription dna templated | GO:0045893 | 57 | 0.013 | |
| g2 dna damage checkpoint | GO:0031572 | 3 | 0.012 | |
| generation of neurons | GO:0048699 | 385 | 0.012 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 1 | 0.012 | |
| single organism transport | GO:0044765 | 206 | 0.012 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 69 | 0.012 | |
| negative regulation of cell death | GO:0060548 | 60 | 0.012 | |
| protein acetylation | GO:0006473 | 2 | 0.012 | |
| ncrna catabolic process | GO:0034661 | 1 | 0.012 | |
| regulation of peptidase activity | GO:0052547 | 23 | 0.012 | |
| regulation of synaptic growth at neuromuscular junction | GO:0008582 | 1 | 0.012 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 1 | 0.012 | |
| rrna catabolic process | GO:0016075 | 1 | 0.012 | |
| skeletal system development | GO:0001501 | 181 | 0.012 | |
| positive regulation of biosynthetic process | GO:0009891 | 68 | 0.012 | |
| regulation of cytoplasmic transport | GO:1903649 | 4 | 0.012 | |
| regulation of meiotic cell cycle | GO:0051445 | 1 | 0.012 | |
| cell migration | GO:0016477 | 237 | 0.012 | |
| adult behavior | GO:0030534 | 2 | 0.011 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 7 | 0.011 | |
| response to organic substance | GO:0010033 | 153 | 0.011 | |
| negative regulation of cytoplasmic transport | GO:1903650 | 2 | 0.011 | |
| embryonic skeletal system development | GO:0048706 | 97 | 0.011 | |
| negative regulation of intracellular protein transport | GO:0090317 | 3 | 0.011 | |
| negative regulation of nuclear division | GO:0051784 | 3 | 0.011 | |
| cellular localization | GO:0051641 | 97 | 0.011 | |
| microtubule polymerization | GO:0046785 | 2 | 0.011 | |
| mitotic cell cycle process | GO:1903047 | 48 | 0.011 | Fly |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 59 | 0.011 | |
| small molecule metabolic process | GO:0044281 | 77 | 0.011 | |
| positive regulation of rna metabolic process | GO:0051254 | 59 | 0.010 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 0 | 0.010 | |
| protein import | GO:0017038 | 3 | 0.010 | |
| macromolecule catabolic process | GO:0009057 | 15 | 0.010 | Yeast |
| regulation of multicellular organismal process | GO:0051239 | 277 | 0.010 | |
| negative regulation of metabolic process | GO:0009892 | 86 | 0.010 | |
| meiosis ii | GO:0007135 | 1 | 0.010 | |
| cell cycle | GO:0007049 | 93 | 0.010 | Fly |
