| cilium organization | GO:0044782 | 71 | 0.398 | Mouse |
| cell morphogenesis | GO:0000902 | 289 | 0.182 | Mouse |
| cell part morphogenesis | GO:0032990 | 246 | 0.166 | Mouse |
| cilium morphogenesis | GO:0060271 | 85 | 0.150 | Mouse |
| cilium assembly | GO:0042384 | 58 | 0.140 | Mouse |
| cell projection morphogenesis | GO:0048858 | 244 | 0.123 | Mouse |
| regulation of cell communication | GO:0010646 | 232 | 0.121 | Mouse |
| single organism localization | GO:1902578 | 225 | 0.113 | |
| protein metabolic process | GO:0019538 | 183 | 0.111 | |
| photoreceptor cell outer segment organization | GO:0035845 | 9 | 0.110 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 4 | 0.109 | |
| cell projection organization | GO:0030030 | 284 | 0.104 | Mouse |
| sensory organ development | GO:0007423 | 393 | 0.102 | |
| regulation of response to stimulus | GO:0048583 | 269 | 0.093 | Mouse |
| cellular localization | GO:0051641 | 97 | 0.091 | |
| establishment of localization | GO:0051234 | 244 | 0.088 | |
| modification dependent protein catabolic process | GO:0019941 | 3 | 0.088 | |
| regulation of primary metabolic process | GO:0080090 | 311 | 0.084 | |
| determination of left right symmetry | GO:0007368 | 179 | 0.084 | |
| cellular component morphogenesis | GO:0032989 | 336 | 0.082 | Mouse |
| negative regulation of biological process | GO:0048519 | 304 | 0.081 | Mouse |
| nucleocytoplasmic transport | GO:0006913 | 4 | 0.081 | |
| atp catabolic process | GO:0006200 | 4 | 0.081 | |
| cell projection assembly | GO:0030031 | 64 | 0.078 | Mouse |
| signal transduction | GO:0007165 | 455 | 0.078 | Mouse |
| specification of symmetry | GO:0009799 | 204 | 0.076 | |
| microtubule based movement | GO:0007018 | 33 | 0.075 | |
| protein modification process | GO:0036211 | 100 | 0.073 | |
| convergent extension involved in gastrulation | GO:0060027 | 71 | 0.071 | |
| morphogenesis of an epithelium | GO:0002009 | 333 | 0.067 | |
| positive regulation of dna metabolic process | GO:0051054 | 1 | 0.067 | |
| cellular component movement | GO:0006928 | 335 | 0.062 | |
| digestive tract development | GO:0048565 | 265 | 0.060 | |
| digestive system development | GO:0055123 | 289 | 0.059 | |
| larval development | GO:0002164 | 2 | 0.059 | |
| transport | GO:0006810 | 220 | 0.058 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 3 | 0.057 | |
| head development | GO:0060322 | 303 | 0.054 | |
| intracellular signal transduction | GO:0035556 | 85 | 0.054 | |
| cytokinesis | GO:0000910 | 3 | 0.052 | |
| embryonic organ development | GO:0048568 | 381 | 0.050 | |
| neuron development | GO:0048666 | 262 | 0.050 | |
| heterocycle metabolic process | GO:0046483 | 290 | 0.049 | |
| single organism organelle organization | GO:1902589 | 199 | 0.048 | Mouse |
| negative regulation of cellular process | GO:0048523 | 283 | 0.048 | Mouse |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 4 | 0.046 | |
| immune system process | GO:0002376 | 241 | 0.045 | |
| telomere organization | GO:0032200 | 1 | 0.044 | |
| phosphorus metabolic process | GO:0006793 | 109 | 0.044 | |
| maintenance of location | GO:0051235 | 4 | 0.044 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 4 | 0.042 | |
| positive regulation of catabolic process | GO:0009896 | 4 | 0.042 | |
| digestive tract morphogenesis | GO:0048546 | 231 | 0.041 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 107 | 0.041 | Mouse |
| single organism transport | GO:0044765 | 206 | 0.041 | |
| protein localization to nucleus | GO:0034504 | 3 | 0.041 | |
| convergent extension | GO:0060026 | 118 | 0.040 | |
| embryonic organ morphogenesis | GO:0048562 | 274 | 0.040 | |
| heart development | GO:0007507 | 313 | 0.039 | |
| organic cyclic compound metabolic process | GO:1901360 | 301 | 0.039 | |
| retina development in camera type eye | GO:0060041 | 146 | 0.038 | |
| protein import into nucleus | GO:0006606 | 3 | 0.038 | |
| determination of bilateral symmetry | GO:0009855 | 204 | 0.038 | |
| regulation of signaling | GO:0023051 | 235 | 0.038 | Mouse |
| pigmentation | GO:0043473 | 85 | 0.038 | |
| cellular response to dna damage stimulus | GO:0006974 | 24 | 0.038 | |
| eye development | GO:0001654 | 277 | 0.036 | |
| nitrogen compound metabolic process | GO:0006807 | 319 | 0.036 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 3 | 0.035 | |
| regulation of synaptic growth at neuromuscular junction | GO:0008582 | 1 | 0.034 | |
| positive regulation of cellular catabolic process | GO:0031331 | 3 | 0.034 | |
| regulation of metabolic process | GO:0019222 | 359 | 0.034 | |
| cellular response to organic substance | GO:0071310 | 105 | 0.033 | Mouse |
| phosphate containing compound metabolic process | GO:0006796 | 108 | 0.033 | |
| regulation of synapse organization | GO:0050807 | 3 | 0.033 | |
| multicellular organism growth | GO:0035264 | 4 | 0.032 | |
| protein complex subunit organization | GO:0071822 | 46 | 0.032 | |
| cellular response to chemical stimulus | GO:0070887 | 157 | 0.031 | Mouse |
| regulation of protein modification by small protein conjugation or removal | GO:1903320 | 3 | 0.031 | |
| telomere maintenance | GO:0000723 | 1 | 0.031 | |
| meiotic nuclear division | GO:0007126 | 4 | 0.031 | |
| cognition | GO:0050890 | 1 | 0.030 | |
| negative regulation of signaling | GO:0023057 | 96 | 0.030 | Mouse |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 2 | 0.029 | |
| regionalization | GO:0003002 | 274 | 0.029 | Mouse |
| cellular protein modification process | GO:0006464 | 100 | 0.028 | |
| positive regulation of map kinase activity | GO:0043406 | 3 | 0.028 | |
| regulation of dna replication | GO:0006275 | 3 | 0.027 | |
| cellular protein metabolic process | GO:0044267 | 129 | 0.027 | |
| regulation of organelle assembly | GO:1902115 | 4 | 0.027 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 4 | 0.027 | |
| neuron differentiation | GO:0030182 | 353 | 0.027 | |
| camera type eye development | GO:0043010 | 222 | 0.027 | |
| multi organism process | GO:0051704 | 134 | 0.027 | |
| intracellular transport | GO:0046907 | 32 | 0.027 | |
| tube morphogenesis | GO:0035239 | 349 | 0.026 | |
| lipid storage | GO:0019915 | 1 | 0.026 | |
| negative regulation of small gtpase mediated signal transduction | GO:0051058 | 1 | 0.026 | |
| negative regulation of cell communication | GO:0010648 | 96 | 0.026 | Mouse |
| single organism metabolic process | GO:0044710 | 217 | 0.026 | |
| regulation of protein ubiquitination | GO:0031396 | 3 | 0.026 | |
| cellular protein catabolic process | GO:0044257 | 4 | 0.026 | |
| negative regulation of response to stimulus | GO:0048585 | 104 | 0.025 | Mouse |
| negative regulation of intracellular transport | GO:0032387 | 3 | 0.025 | |
| positive regulation of transport | GO:0051050 | 2 | 0.025 | |
| epithelial cell differentiation | GO:0030855 | 116 | 0.025 | |
| organelle localization | GO:0051640 | 49 | 0.025 | |
| regulation of response to oxidative stress | GO:1902882 | 2 | 0.024 | |
| regulation of protein binding | GO:0043393 | 3 | 0.024 | |
| nucleobase containing compound metabolic process | GO:0006139 | 274 | 0.024 | |
| dna metabolic process | GO:0006259 | 27 | 0.024 | |
| positive regulation of signaling | GO:0023056 | 56 | 0.024 | |
| negative regulation of signal transduction | GO:0009968 | 94 | 0.024 | Mouse |
| regulation of developmental process | GO:0050793 | 247 | 0.023 | Mouse |
| negative regulation of ras protein signal transduction | GO:0046580 | 1 | 0.023 | |
| positive regulation of notch signaling pathway | GO:0045747 | 3 | 0.023 | |
| nuclear export | GO:0051168 | 1 | 0.023 | |
| regulation of cellular component organization | GO:0051128 | 86 | 0.023 | |
| establishment of localization in cell | GO:0051649 | 77 | 0.023 | |
| organonitrogen compound metabolic process | GO:1901564 | 74 | 0.023 | |
| regulation of skeletal muscle tissue development | GO:0048641 | 4 | 0.022 | |
| negative regulation of cytoplasmic transport | GO:1903650 | 2 | 0.022 | |
| regulation of binding | GO:0051098 | 3 | 0.022 | |
| erk1 and erk2 cascade | GO:0070371 | 4 | 0.022 | |
| cellular nitrogen compound metabolic process | GO:0034641 | 290 | 0.022 | |
| response to stress | GO:0006950 | 263 | 0.022 | |
| aging | GO:0007568 | 2 | 0.022 | |
| cilium movement | GO:0003341 | 26 | 0.021 | |
| regulation of biological quality | GO:0065008 | 263 | 0.021 | |
| microtubule based process | GO:0007017 | 60 | 0.021 | |
| nuclear transport | GO:0051169 | 4 | 0.021 | |
| spermatid differentiation | GO:0048515 | 2 | 0.021 | |
| protein import | GO:0017038 | 3 | 0.021 | |
| macromolecular complex subunit organization | GO:0043933 | 74 | 0.021 | |
| macromolecule localization | GO:0033036 | 54 | 0.021 | |
| homeostatic process | GO:0042592 | 142 | 0.021 | |
| regulation of multicellular organismal process | GO:0051239 | 277 | 0.021 | Mouse |
| ear development | GO:0043583 | 127 | 0.021 | |
| negative regulation of protein phosphorylation | GO:0001933 | 4 | 0.020 | |
| response to uv | GO:0009411 | 3 | 0.020 | |
| organelle organization | GO:0006996 | 227 | 0.020 | Mouse |
| regulation of protein catabolic process | GO:0042176 | 1 | 0.020 | |
| positive regulation of cytoskeleton organization | GO:0051495 | 3 | 0.020 | |
| cell cycle g1 s phase transition | GO:0044843 | 1 | 0.020 | |
| small molecule metabolic process | GO:0044281 | 77 | 0.020 | |
| regulation of meiotic cell cycle | GO:0051445 | 1 | 0.020 | |
| cellular response to stress | GO:0033554 | 62 | 0.020 | |
| transcription dna templated | GO:0006351 | 181 | 0.020 | |
| positive regulation of cell cycle | GO:0045787 | 3 | 0.020 | |
| response to chemical | GO:0042221 | 320 | 0.020 | Mouse |
| positive regulation of nucleoside metabolic process | GO:0045979 | 1 | 0.019 | |
| protein complex disassembly | GO:0043241 | 1 | 0.019 | |
| regulation of protein complex assembly | GO:0043254 | 3 | 0.019 | |
| cellular amine metabolic process | GO:0044106 | 2 | 0.019 | |
| macromolecule modification | GO:0043412 | 111 | 0.019 | |
| carbohydrate derivative metabolic process | GO:1901135 | 61 | 0.018 | |
| regulation of signal transduction | GO:0009966 | 225 | 0.018 | Mouse |
| positive regulation of biological process | GO:0048518 | 253 | 0.018 | |
| regulation of establishment of protein localization | GO:0070201 | 4 | 0.018 | |
| synaptic growth at neuromuscular junction | GO:0051124 | 2 | 0.018 | |
| single organism nuclear import | GO:1902593 | 3 | 0.018 | |
| negative regulation of protein import into nucleus | GO:0042308 | 2 | 0.018 | |
| positive regulation of cellular metabolic process | GO:0031325 | 94 | 0.018 | |
| cellular component assembly | GO:0022607 | 170 | 0.017 | Mouse |
| renal system development | GO:0072001 | 94 | 0.017 | |
| central nervous system development | GO:0007417 | 387 | 0.017 | |
| nuclear import | GO:0051170 | 3 | 0.017 | |
| single organism intracellular transport | GO:1902582 | 25 | 0.017 | |
| phosphorylation | GO:0016310 | 69 | 0.017 | |
| mitotic cell cycle | GO:0000278 | 64 | 0.017 | |
| negative regulation of intracellular protein transport | GO:0090317 | 3 | 0.017 | |
| double strand break repair | GO:0006302 | 3 | 0.017 | |
| organic substance catabolic process | GO:1901575 | 28 | 0.017 | |
| regulation of organ growth | GO:0046620 | 3 | 0.017 | |
| chromosome organization | GO:0051276 | 31 | 0.017 | |
| exocytosis | GO:0006887 | 1 | 0.017 | |
| spermatid development | GO:0007286 | 2 | 0.017 | |
| regulation of protein transport | GO:0051223 | 3 | 0.017 | |
| regulation of synapse assembly | GO:0051963 | 3 | 0.017 | |
| macromolecular complex disassembly | GO:0032984 | 1 | 0.016 | |
| system process | GO:0003008 | 185 | 0.016 | |
| response to carbohydrate | GO:0009743 | 3 | 0.016 | |
| protein dephosphorylation | GO:0006470 | 3 | 0.016 | |
| regulation of cytoplasmic transport | GO:1903649 | 4 | 0.016 | |
| purine nucleotide metabolic process | GO:0006163 | 27 | 0.016 | |
| cell motility | GO:0048870 | 244 | 0.016 | |
| regulation of gene expression | GO:0010468 | 265 | 0.016 | |
| positive regulation of response to stimulus | GO:0048584 | 80 | 0.016 | |
| negative regulation of protein transport | GO:0051224 | 3 | 0.016 | |
| somatic stem cell maintenance | GO:0035019 | 1 | 0.016 | |
| cytoskeleton dependent cytokinesis | GO:0061640 | 3 | 0.016 | |
| single organism cellular localization | GO:1902580 | 46 | 0.016 | |
| regulation of protein metabolic process | GO:0051246 | 56 | 0.016 | |
| meiotic cell cycle process | GO:1903046 | 3 | 0.016 | |
| circulatory system process | GO:0003013 | 87 | 0.016 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 3 | 0.015 | |
| cellular macromolecule metabolic process | GO:0044260 | 391 | 0.015 | |
| regulation of exocytosis | GO:0017157 | 1 | 0.015 | |
| cellular component disassembly | GO:0022411 | 1 | 0.015 | |
| regulation of erk1 and erk2 cascade | GO:0070372 | 4 | 0.015 | |
| phosphatidylinositol mediated signaling | GO:0048015 | 2 | 0.015 | |
| regulation of microtubule cytoskeleton organization | GO:0070507 | 3 | 0.015 | |
| amine metabolic process | GO:0009308 | 2 | 0.015 | |
| cell surface receptor signaling pathway | GO:0007166 | 325 | 0.015 | Mouse |
| fin regeneration | GO:0031101 | 51 | 0.015 | |
| cytoskeleton organization | GO:0007010 | 96 | 0.014 | Mouse |
| cellular protein complex assembly | GO:0043623 | 19 | 0.014 | |
| proteasomal protein catabolic process | GO:0010498 | 2 | 0.014 | |
| regulation of dna metabolic process | GO:0051052 | 11 | 0.014 | |
| nonmotile primary cilium assembly | GO:0035058 | 2 | 0.014 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 1 | 0.014 | |
| anatomical structure homeostasis | GO:0060249 | 36 | 0.014 | |
| regulation of nitrogen compound metabolic process | GO:0051171 | 251 | 0.014 | |
| regulation of organelle organization | GO:0033043 | 29 | 0.014 | |
| positive regulation of metabolic process | GO:0009893 | 108 | 0.014 | |
| cellular catabolic process | GO:0044248 | 27 | 0.014 | |
| positive regulation of erk1 and erk2 cascade | GO:0070374 | 2 | 0.014 | |
| aromatic compound biosynthetic process | GO:0019438 | 217 | 0.014 | |
| cartilage development | GO:0051216 | 96 | 0.014 | |
| chemical homeostasis | GO:0048878 | 49 | 0.014 | |
| regulation of cellular metabolic process | GO:0031323 | 320 | 0.014 | |
| negative regulation of nucleocytoplasmic transport | GO:0046823 | 2 | 0.014 | |
| catabolic process | GO:0009056 | 32 | 0.014 | |
| gastrulation | GO:0007369 | 208 | 0.014 | |
| cellular aromatic compound metabolic process | GO:0006725 | 295 | 0.014 | |
| positive regulation of cellular process | GO:0048522 | 201 | 0.013 | |
| regulation of macromolecule metabolic process | GO:0060255 | 317 | 0.013 | |
| forebrain development | GO:0030900 | 96 | 0.013 | |
| regulation of cell development | GO:0060284 | 100 | 0.013 | |
| regulation of intracellular signal transduction | GO:1902531 | 57 | 0.013 | |
| proteolysis | GO:0006508 | 38 | 0.013 | |
| response to corticosteroid | GO:0031960 | 1 | 0.013 | |
| nucleic acid metabolic process | GO:0090304 | 244 | 0.013 | |
| regulation of stem cell differentiation | GO:2000736 | 4 | 0.013 | |
| small gtpase mediated signal transduction | GO:0007264 | 8 | 0.013 | |
| microtubule bundle formation | GO:0001578 | 9 | 0.013 | Mouse |
| establishment of organelle localization | GO:0051656 | 45 | 0.013 | |
| organic substance biosynthetic process | GO:1901576 | 289 | 0.013 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 1 | 0.013 | |
| organic cyclic compound biosynthetic process | GO:1901362 | 223 | 0.013 | |
| organic acid metabolic process | GO:0006082 | 31 | 0.013 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 80 | 0.013 | |
| regulation of rho protein signal transduction | GO:0035023 | 2 | 0.012 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 0 | 0.012 | |
| cellular ketone metabolic process | GO:0042180 | 11 | 0.012 | |
| biosynthetic process | GO:0009058 | 294 | 0.012 | |
| adult behavior | GO:0030534 | 2 | 0.012 | |
| negative regulation of cellular catabolic process | GO:0031330 | 3 | 0.012 | |
| negative chemotaxis | GO:0050919 | 1 | 0.012 | |
| cellular component biogenesis | GO:0044085 | 178 | 0.012 | Mouse |
| chemotaxis | GO:0006935 | 104 | 0.012 | |
| regulation of tube size | GO:0035150 | 2 | 0.012 | |
| regulation of cellular amine metabolic process | GO:0033238 | 0 | 0.012 | |
| limbic system development | GO:0021761 | 16 | 0.012 | |
| protein targeting to nucleus | GO:0044744 | 3 | 0.012 | |
| developmental programmed cell death | GO:0010623 | 4 | 0.012 | |
| regulation of nucleoside metabolic process | GO:0009118 | 2 | 0.012 | |
| regulation of purine nucleotide catabolic process | GO:0033121 | 2 | 0.012 | |
| regulation of wnt signaling pathway | GO:0030111 | 53 | 0.012 | |
| establishment of protein localization to organelle | GO:0072594 | 4 | 0.012 | |
| cellular response to decreased oxygen levels | GO:0036294 | 1 | 0.012 | |
| regulation of nucleobase containing compound metabolic process | GO:0019219 | 250 | 0.011 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 14 | 0.011 | |
| protein localization | GO:0008104 | 40 | 0.011 | |
| cell migration | GO:0016477 | 237 | 0.011 | |
| neuron projection morphogenesis | GO:0048812 | 161 | 0.011 | |
| regulation of response to cytokine stimulus | GO:0060759 | 3 | 0.011 | |
| determination of heart left right asymmetry | GO:0061371 | 117 | 0.011 | |
| oxoacid metabolic process | GO:0043436 | 31 | 0.011 | |
| inositol lipid mediated signaling | GO:0048017 | 2 | 0.011 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 3 | 0.011 | |
| multicellular organismal response to stress | GO:0033555 | 2 | 0.011 | |
| negative regulation of dna metabolic process | GO:0051053 | 4 | 0.011 | |
| generation of neurons | GO:0048699 | 385 | 0.011 | |
| meiosis i | GO:0007127 | 1 | 0.011 | |
| regulation of glucose import | GO:0046324 | 1 | 0.011 | |
| symbiosis encompassing mutualism through parasitism | GO:0044403 | 4 | 0.011 | |
| modification of morphology or physiology of other organism | GO:0035821 | 4 | 0.011 | |
| positive regulation of signal transduction | GO:0009967 | 56 | 0.011 | |
| centrosome organization | GO:0051297 | 1 | 0.011 | |
| positive regulation of jun kinase activity | GO:0043507 | 2 | 0.011 | |
| regulation of protein complex disassembly | GO:0043244 | 1 | 0.011 | |
| positive regulation of stress activated protein kinase signaling cascade | GO:0070304 | 3 | 0.011 | |
| regulation of protein localization to nucleus | GO:1900180 | 2 | 0.011 | |
| cellular response to endogenous stimulus | GO:0071495 | 68 | 0.011 | Mouse |
| neuron projection development | GO:0031175 | 180 | 0.010 | |
| meiotic chromosome segregation | GO:0045132 | 3 | 0.010 | |
| g2 dna damage checkpoint | GO:0031572 | 3 | 0.010 | |
| hemopoiesis | GO:0030097 | 183 | 0.010 | |
| wnt signaling pathway | GO:0016055 | 80 | 0.010 | |
| regulation of catalytic activity | GO:0050790 | 55 | 0.010 | |
| regulation of proteolysis | GO:0030162 | 24 | 0.010 | |
| positive regulation of cell communication | GO:0010647 | 56 | 0.010 | |
| reactive oxygen species metabolic process | GO:0072593 | 6 | 0.010 | |
| negative regulation of cytokine production | GO:0001818 | 1 | 0.010 | |
| negative regulation of reproductive process | GO:2000242 | 3 | 0.010 | |
| regulation of establishment of planar polarity | GO:0090175 | 4 | 0.010 | |
