IMP
Process View
regulation of transcription by chromatin organization
Any cellular process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin that modulates the rate, frequency or extent of DNA-dependent transcription.
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In addition to gene-name show these genes:
Click on a gene's description to view its network relationships with genes known to be involved in "regulation of transcription by chromatin organization"
| Name | Description | Probability | Func Analog Organism | |
|---|---|---|---|---|
| POLE2 | polymerase (DNA directed), epsilon 2 (p59 subunit) | 0.872 | ||
| NBN | nibrin | 0.715 | ||
| CREBBP | CREB binding protein | 0.597 | ||
| CBX5 | chromobox homolog 5 | 0.543 | ||
| EP300 | E1A binding protein p300 | 0.494 | ||
| TRRAP | transformation/transcription domain-associated protein | 0.456 | ||
| MCM7 | minichromosome maintenance complex component 7 | 0.429 | ||
| RTF1 | Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) | 0.335 | ||
| CDC73 | cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) | 0.299 | ||
| RB1 | retinoblastoma 1 | 0.240 | ||
| RAD50 | RAD50 homolog (S. cerevisiae) | 0.229 | ||
| POLE3 | polymerase (DNA directed), epsilon 3 (p17 subunit) | 0.227 | ||
| BAZ1A | bromodomain adjacent to zinc finger domain, 1A | 0.209 | ||
| SSRP1 | structure specific recognition protein 1 | 0.201 | ||
| TGIF1 | TGFB-induced factor homeobox 1 | 0.196 | ||
| HIST1H3B | histone cluster 1, H3b | 0.168 | ||
| LBR | lamin B receptor | 0.154 | ||
| WRN | Werner syndrome, RecQ helicase-like | 0.135 | ||
| ADNP | activity-dependent neuroprotector homeobox | 0.119 | ||
| NRIP1 | nuclear receptor interacting protein 1 | 0.103 | ||
| NSL1 | NSL1, MIND kinetochore complex component, homolog (S. cerevisiae) | 0.102 | ||
| RAD21 | RAD21 homolog (S. pombe) | 0.102 | ||
| CBX1 | chromobox homolog 1 | 0.101 | ||
| SMARCC1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 | 0.099 | ||
| ATXN7 | ataxin 7 | 0.093 | ||
| PRRC2C | proline-rich coiled-coil 2C | 0.085 | ||
| SMARCA5 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 | 0.084 | Yeast | |
| LEO1 | Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) | 0.083 | ||
| MCM2 | minichromosome maintenance complex component 2 | 0.081 | ||
| CDK2 | cyclin-dependent kinase 2 | 0.080 | ||
| RANBP2 | RAN binding protein 2 | 0.078 | ||
| INCENP | inner centromere protein antigens 135/155kDa | 0.077 | ||
| BCLAF1 | BCL2-associated transcription factor 1 | 0.075 | ||
| CREB1 | cAMP responsive element binding protein 1 | 0.070 | ||
| USP22 | ubiquitin specific peptidase 22 | 0.068 | ||
| CHRAC1 | chromatin accessibility complex 1 | 0.067 | ||
| SMC1A | structural maintenance of chromosomes 1A | 0.065 | ||
| RBBP4 | retinoblastoma binding protein 4 | 0.063 | ||
| MRE11A | MRE11 meiotic recombination 11 homolog A (S. cerevisiae) | 0.063 | ||
| HIF1A | hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) | 0.058 | ||
| DHX9 | DEAH (Asp-Glu-Ala-His) box polypeptide 9 | 0.055 | ||
| HIPK2 | homeodomain interacting protein kinase 2 | 0.053 | ||
| BAZ1B | bromodomain adjacent to zinc finger domain, 1B | 0.052 | ||
| MCM3 | minichromosome maintenance complex component 3 | 0.050 | ||
| RBBP8 | retinoblastoma binding protein 8 | 0.050 | ||
| KAT2B | K(lysine) acetyltransferase 2B | 0.049 | Yeast | |
| ORC6 | origin recognition complex, subunit 6 | 0.048 | ||
| PML | promyelocytic leukemia | 0.047 | ||
| TAF4 | TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa | 0.047 | ||
| MBD1 | methyl-CpG binding domain protein 1 | 0.047 | ||
| DAXX | death-domain associated protein | 0.046 | ||
| SUZ12 | suppressor of zeste 12 homolog (Drosophila) | 0.044 | ||
| NCOA3 | nuclear receptor coactivator 3 | 0.043 | ||
| CTNNB1 | catenin (cadherin-associated protein), beta 1, 88kDa | 0.040 | ||
| PAF1 | Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) | 0.038 | ||
| MCMBP | minichromosome maintenance complex binding protein | 0.038 | ||
| TOPORS | topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase | 0.037 | ||
| UBE2I | ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) | 0.035 | ||
| SIN3A | SIN3 homolog A, transcription regulator (yeast) | 0.033 | ||
| PRKDC | protein kinase, DNA-activated, catalytic polypeptide | 0.033 | ||
| NR3C1 | nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) | 0.032 | ||
| APC | adenomatous polyposis coli | 0.032 | ||
| MLL | myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) | 0.031 | ||
| MDC1 | mediator of DNA-damage checkpoint 1 | 0.031 | ||
| EED | embryonic ectoderm development | 0.030 | ||
| PTPN4 | protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) | 0.029 | ||
| DNMT1 | DNA (cytosine-5-)-methyltransferase 1 | 0.029 | ||
| AR | androgen receptor | 0.028 | ||
| NUP50 | nucleoporin 50kDa | 0.028 | ||
| BAZ2B | bromodomain adjacent to zinc finger domain, 2B | 0.027 | ||
| MCM4 | minichromosome maintenance complex component 4 | 0.027 | ||
| TADA2A | transcriptional adaptor 2A | 0.027 | ||
| FOXO3 | forkhead box O3 | 0.027 | ||
| CDK6 | cyclin-dependent kinase 6 | 0.027 | ||
| HDAC1 | histone deacetylase 1 | 0.026 | ||
| NCOA1 | nuclear receptor coactivator 1 | 0.026 | ||
| ADNP2 | ADNP homeobox 2 | 0.025 | ||
| MORC3 | MORC family CW-type zinc finger 3 | 0.025 | ||
| TAF15 | TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa | 0.025 | ||
| XRCC5 | X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) | 0.025 | ||
| RSF1 | remodeling and spacing factor 1 | 0.025 | ||
| MIS12 | MIS12, MIND kinetochore complex component, homolog (S. pombe) | 0.025 | ||
| H2AFV | H2A histone family, member V | 0.025 | ||
| POLE4 | polymerase (DNA-directed), epsilon 4 (p12 subunit) | 0.024 | ||
| CHAF1B | chromatin assembly factor 1, subunit B (p60) | 0.024 | ||
| DR1 | down-regulator of transcription 1, TBP-binding (negative cofactor 2) | 0.024 | ||
| TADA3 | transcriptional adaptor 3 | 0.023 | ||
| H3F3B | H3 histone, family 3B (H3.3B) | 0.023 | ||
| CRY1 | cryptochrome 1 (photolyase-like) | 0.023 | ||
| CHAF1A | chromatin assembly factor 1, subunit A (p150) | 0.023 | ||
| SUV39H1 | suppressor of variegation 3-9 homolog 1 (Drosophila) | 0.022 | ||
| MSH6 | mutS homolog 6 (E. coli) | 0.022 | ||
| POGZ | pogo transposable element with ZNF domain | 0.021 | ||
| CHEK2 | CHK2 checkpoint homolog (S. pombe) | 0.021 | ||
| TOP1 | topoisomerase (DNA) I | 0.021 | ||
| HMGXB4 | HMG box domain containing 4 | 0.021 | ||
| ZEB1 | zinc finger E-box binding homeobox 1 | 0.020 | ||
| NCOA6 | nuclear receptor coactivator 6 | 0.020 | ||
| ANKRD17 | ankyrin repeat domain 17 | 0.020 | ||
| H2AFX | H2A histone family, member X | 0.020 | ||
| ZNF267 | zinc finger protein 267 | 0.019 | ||
| POLE | polymerase (DNA directed), epsilon | 0.019 | ||
| SMNDC1 | survival motor neuron domain containing 1 | 0.019 | ||
| TTC3 | tetratricopeptide repeat domain 3 | 0.018 | ||
| NUP98 | nucleoporin 98kDa | 0.018 | ||
| IRF2 | interferon regulatory factor 2 | 0.018 | ||
| EIF4E | eukaryotic translation initiation factor 4E | 0.018 | ||
| RPA2 | replication protein A2, 32kDa | 0.018 | ||
| NCOR1 | nuclear receptor corepressor 1 | 0.018 | ||
| C1orf9 | chromosome 1 open reading frame 9 | 0.018 | ||
| PPP2R5E | protein phosphatase 2, regulatory subunit B', epsilon isoform | 0.018 | ||
| ANP32A | acidic (leucine-rich) nuclear phosphoprotein 32 family, member A | 0.018 | ||
| IK | IK cytokine, down-regulator of HLA II | 0.017 | ||
| KIAA1033 | KIAA1033 | 0.017 | ||
| PARP1 | poly (ADP-ribose) polymerase 1 | 0.017 | ||
| SMCHD1 | structural maintenance of chromosomes flexible hinge domain containing 1 | 0.017 | ||
| LIG1 | ligase I, DNA, ATP-dependent | 0.017 | ||
| TAF10 | TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa | 0.017 | ||
| RBM25 | RNA binding motif protein 25 | 0.017 | ||
| TPR | translocated promoter region (to activated MET oncogene) | 0.016 | Fly | |
| SRP9 | signal recognition particle 9kDa | 0.016 | ||
| AHCTF1 | AT hook containing transcription factor 1 | 0.016 | ||
| FOXO1 | forkhead box O1 | 0.016 | ||
| POLR1A | polymerase (RNA) I polypeptide A, 194kDa | 0.016 | ||
| SATB1 | SATB homeobox 1 | 0.015 | ||
| CDKN2A | cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) | 0.015 | ||
| NIPBL | Nipped-B homolog (Drosophila) | 0.015 | ||
| FN3KRP | fructosamine 3 kinase related protein | 0.015 | ||
| KIAA1377 | KIAA1377 | 0.015 | ||
| SUPT3H | suppressor of Ty 3 homolog (S. cerevisiae) | 0.015 | ||
| LCORL | ligand dependent nuclear receptor corepressor-like | 0.015 | ||
| SOX13 | SRY (sex determining region Y)-box 13 | 0.015 | ||
| CDCA4 | cell division cycle associated 4 | 0.015 | ||
| RUNX1 | runt-related transcription factor 1 | 0.014 | ||
| SMAD7 | SMAD family member 7 | 0.014 | ||
| MYST2 | MYST histone acetyltransferase 2 | 0.014 | ||
| CEP72 | centrosomal protein 72kDa | 0.014 | ||
| IKZF1 | IKAROS family zinc finger 1 (Ikaros) | 0.014 | ||
| USF1 | upstream transcription factor 1 | 0.014 | ||
| C20orf20 | chromosome 20 open reading frame 20 | 0.013 | ||
| CDYL | chromodomain protein, Y-like | 0.013 | ||
| E2F3 | E2F transcription factor 3 | 0.013 | ||
| CHD3 | chromodomain helicase DNA binding protein 3 | 0.013 | ||
| KLF4 | Kruppel-like factor 4 (gut) | 0.013 | ||
| TP53BP2 | tumor protein p53 binding protein, 2 | 0.013 | ||
| RPA1 | replication protein A1, 70kDa | 0.013 | ||
| AHR | aryl hydrocarbon receptor | 0.013 | ||
| TAF6 | TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa | 0.013 | ||
| MBNL1 | muscleblind-like (Drosophila) | 0.013 | ||
| GINS4 | GINS complex subunit 4 (Sld5 homolog) | 0.013 | ||
| TELO2 | TEL2, telomere maintenance 2, homolog (S. cerevisiae) | 0.012 | ||
| ACACA | acetyl-CoA carboxylase alpha | 0.012 | ||
| RRP8 | ribosomal RNA processing 8, methyltransferase, homolog (yeast) | 0.012 | ||
| SCAF8 | SR-related CTD-associated factor 8 | 0.012 | ||
| CDC45 | cell division cycle 45 homolog (S. cerevisiae) | 0.012 | ||
| PPP2CA | protein phosphatase 2, catalytic subunit, alpha isozyme | 0.012 | ||
| STRN3 | striatin, calmodulin binding protein 3 | 0.012 | ||
| TCF3 | transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) | 0.012 | ||
| SUPT16H | suppressor of Ty 16 homolog (S. cerevisiae) | 0.012 | Yeast | |
| GABPB1 | GA binding protein transcription factor, beta subunit 1 | 0.012 | ||
| CCNH | cyclin H | 0.012 | ||
| TPP2 | tripeptidyl peptidase II | 0.011 | ||
| CHD1L | chromodomain helicase DNA binding protein 1-like | 0.011 | ||
| LGALS8 | lectin, galactoside-binding, soluble, 8 | 0.011 | ||
| VPS72 | vacuolar protein sorting 72 homolog (S. cerevisiae) | 0.011 | ||
| MED24 | mediator complex subunit 24 | 0.011 | ||
| MED1 | mediator complex subunit 1 | 0.011 | ||
| MEF2C | myocyte enhancer factor 2C | 0.011 | ||
| RBM39 | RNA binding motif protein 39 | 0.011 | ||
| JMY | junction mediating and regulatory protein, p53 cofactor | 0.011 | ||
| MAGEA2 | melanoma antigen family A, 2 | 0.011 | ||
| CNN3 | calponin 3, acidic | 0.011 | ||
| CTR9 | Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) | 0.011 | Yeast | |
| DICER1 | dicer 1, ribonuclease type III | 0.011 | ||
| CUX1 | cut-like homeobox 1 | 0.011 | ||
| ASF1B | ASF1 anti-silencing function 1 homolog B (S. cerevisiae) | 0.011 | ||
| E2F1 | E2F transcription factor 1 | 0.011 | ||
| AMD1 | adenosylmethionine decarboxylase 1 | 0.011 | ||
| EIF4A2 | eukaryotic translation initiation factor 4A2 | 0.011 | ||
| EID1 | EP300 interacting inhibitor of differentiation 1 | 0.011 | ||
| TRIM33 | tripartite motif containing 33 | 0.011 | ||
| ZNF689 | zinc finger protein 689 | 0.010 | ||
| ZNF217 | zinc finger protein 217 | 0.010 | ||
| MYST3 | MYST histone acetyltransferase (monocytic leukemia) 3 | 0.010 | ||
| THAP11 | THAP domain containing 11 | 0.010 | ||
| MCM5 | minichromosome maintenance complex component 5 | 0.010 | ||
| TCF4 | transcription factor 4 | 0.010 |