Process View
Any cellular process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin that modulates the rate, frequency or extent of DNA-dependent transcription.
In addition to gene-name show these genes:
Click on a gene's description to view its network relationships with genes known to be involved in "regulation of transcription by chromatin organization"
Name | Description | Probability | Func Analog Organism | |
---|---|---|---|---|
POLE2 | polymerase (DNA directed), epsilon 2 (p59 subunit) | 0.872 | ||
NBN | nibrin | 0.715 | ||
CREBBP | CREB binding protein | 0.597 | ||
CBX5 | chromobox homolog 5 | 0.543 | ||
EP300 | E1A binding protein p300 | 0.494 | ||
TRRAP | transformation/transcription domain-associated protein | 0.456 | ||
MCM7 | minichromosome maintenance complex component 7 | 0.429 | ||
RTF1 | Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) | 0.335 | ||
CDC73 | cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) | 0.299 | ||
RB1 | retinoblastoma 1 | 0.240 | ||
RAD50 | RAD50 homolog (S. cerevisiae) | 0.229 | ||
POLE3 | polymerase (DNA directed), epsilon 3 (p17 subunit) | 0.227 | ||
BAZ1A | bromodomain adjacent to zinc finger domain, 1A | 0.209 | ||
SSRP1 | structure specific recognition protein 1 | 0.201 | ||
TGIF1 | TGFB-induced factor homeobox 1 | 0.196 | ||
HIST1H3B | histone cluster 1, H3b | 0.168 | ||
LBR | lamin B receptor | 0.154 | ||
WRN | Werner syndrome, RecQ helicase-like | 0.135 | ||
ADNP | activity-dependent neuroprotector homeobox | 0.119 | ||
NRIP1 | nuclear receptor interacting protein 1 | 0.103 | ||
NSL1 | NSL1, MIND kinetochore complex component, homolog (S. cerevisiae) | 0.102 | ||
RAD21 | RAD21 homolog (S. pombe) | 0.102 | ||
CBX1 | chromobox homolog 1 | 0.101 | ||
SMARCC1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 | 0.099 | ||
ATXN7 | ataxin 7 | 0.093 | ||
PRRC2C | proline-rich coiled-coil 2C | 0.085 | ||
SMARCA5 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 | 0.084 | Yeast | |
LEO1 | Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) | 0.083 | ||
MCM2 | minichromosome maintenance complex component 2 | 0.081 | ||
CDK2 | cyclin-dependent kinase 2 | 0.080 | ||
RANBP2 | RAN binding protein 2 | 0.078 | ||
INCENP | inner centromere protein antigens 135/155kDa | 0.077 | ||
BCLAF1 | BCL2-associated transcription factor 1 | 0.075 | ||
CREB1 | cAMP responsive element binding protein 1 | 0.070 | ||
USP22 | ubiquitin specific peptidase 22 | 0.068 | ||
CHRAC1 | chromatin accessibility complex 1 | 0.067 | ||
SMC1A | structural maintenance of chromosomes 1A | 0.065 | ||
RBBP4 | retinoblastoma binding protein 4 | 0.063 | ||
MRE11A | MRE11 meiotic recombination 11 homolog A (S. cerevisiae) | 0.063 | ||
HIF1A | hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) | 0.058 | ||
DHX9 | DEAH (Asp-Glu-Ala-His) box polypeptide 9 | 0.055 | ||
HIPK2 | homeodomain interacting protein kinase 2 | 0.053 | ||
BAZ1B | bromodomain adjacent to zinc finger domain, 1B | 0.052 | ||
MCM3 | minichromosome maintenance complex component 3 | 0.050 | ||
RBBP8 | retinoblastoma binding protein 8 | 0.050 | ||
KAT2B | K(lysine) acetyltransferase 2B | 0.049 | Yeast | |
ORC6 | origin recognition complex, subunit 6 | 0.048 | ||
PML | promyelocytic leukemia | 0.047 | ||
TAF4 | TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa | 0.047 | ||
MBD1 | methyl-CpG binding domain protein 1 | 0.047 | ||
DAXX | death-domain associated protein | 0.046 | ||
SUZ12 | suppressor of zeste 12 homolog (Drosophila) | 0.044 | ||
NCOA3 | nuclear receptor coactivator 3 | 0.043 | ||
CTNNB1 | catenin (cadherin-associated protein), beta 1, 88kDa | 0.040 | ||
PAF1 | Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) | 0.038 | ||
MCMBP | minichromosome maintenance complex binding protein | 0.038 | ||
TOPORS | topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase | 0.037 | ||
UBE2I | ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) | 0.035 | ||
SIN3A | SIN3 homolog A, transcription regulator (yeast) | 0.033 | ||
PRKDC | protein kinase, DNA-activated, catalytic polypeptide | 0.033 | ||
NR3C1 | nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) | 0.032 | ||
APC | adenomatous polyposis coli | 0.032 | ||
MLL | myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) | 0.031 | ||
MDC1 | mediator of DNA-damage checkpoint 1 | 0.031 | ||
EED | embryonic ectoderm development | 0.030 | ||
PTPN4 | protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) | 0.029 | ||
DNMT1 | DNA (cytosine-5-)-methyltransferase 1 | 0.029 | ||
AR | androgen receptor | 0.028 | ||
NUP50 | nucleoporin 50kDa | 0.028 | ||
BAZ2B | bromodomain adjacent to zinc finger domain, 2B | 0.027 | ||
MCM4 | minichromosome maintenance complex component 4 | 0.027 | ||
TADA2A | transcriptional adaptor 2A | 0.027 | ||
FOXO3 | forkhead box O3 | 0.027 | ||
CDK6 | cyclin-dependent kinase 6 | 0.027 | ||
HDAC1 | histone deacetylase 1 | 0.026 | ||
NCOA1 | nuclear receptor coactivator 1 | 0.026 | ||
ADNP2 | ADNP homeobox 2 | 0.025 | ||
MORC3 | MORC family CW-type zinc finger 3 | 0.025 | ||
TAF15 | TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa | 0.025 | ||
XRCC5 | X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) | 0.025 | ||
RSF1 | remodeling and spacing factor 1 | 0.025 | ||
MIS12 | MIS12, MIND kinetochore complex component, homolog (S. pombe) | 0.025 | ||
H2AFV | H2A histone family, member V | 0.025 | ||
POLE4 | polymerase (DNA-directed), epsilon 4 (p12 subunit) | 0.024 | ||
CHAF1B | chromatin assembly factor 1, subunit B (p60) | 0.024 | ||
DR1 | down-regulator of transcription 1, TBP-binding (negative cofactor 2) | 0.024 | ||
TADA3 | transcriptional adaptor 3 | 0.023 | ||
H3F3B | H3 histone, family 3B (H3.3B) | 0.023 | ||
CRY1 | cryptochrome 1 (photolyase-like) | 0.023 | ||
CHAF1A | chromatin assembly factor 1, subunit A (p150) | 0.023 | ||
SUV39H1 | suppressor of variegation 3-9 homolog 1 (Drosophila) | 0.022 | ||
MSH6 | mutS homolog 6 (E. coli) | 0.022 | ||
POGZ | pogo transposable element with ZNF domain | 0.021 | ||
CHEK2 | CHK2 checkpoint homolog (S. pombe) | 0.021 | ||
TOP1 | topoisomerase (DNA) I | 0.021 | ||
HMGXB4 | HMG box domain containing 4 | 0.021 | ||
ZEB1 | zinc finger E-box binding homeobox 1 | 0.020 | ||
NCOA6 | nuclear receptor coactivator 6 | 0.020 | ||
ANKRD17 | ankyrin repeat domain 17 | 0.020 | ||
H2AFX | H2A histone family, member X | 0.020 | ||
ZNF267 | zinc finger protein 267 | 0.019 | ||
POLE | polymerase (DNA directed), epsilon | 0.019 | ||
SMNDC1 | survival motor neuron domain containing 1 | 0.019 | ||
TTC3 | tetratricopeptide repeat domain 3 | 0.018 | ||
NUP98 | nucleoporin 98kDa | 0.018 | ||
IRF2 | interferon regulatory factor 2 | 0.018 | ||
EIF4E | eukaryotic translation initiation factor 4E | 0.018 | ||
RPA2 | replication protein A2, 32kDa | 0.018 | ||
NCOR1 | nuclear receptor corepressor 1 | 0.018 | ||
C1orf9 | chromosome 1 open reading frame 9 | 0.018 | ||
PPP2R5E | protein phosphatase 2, regulatory subunit B', epsilon isoform | 0.018 | ||
ANP32A | acidic (leucine-rich) nuclear phosphoprotein 32 family, member A | 0.018 | ||
IK | IK cytokine, down-regulator of HLA II | 0.017 | ||
KIAA1033 | KIAA1033 | 0.017 | ||
PARP1 | poly (ADP-ribose) polymerase 1 | 0.017 | ||
SMCHD1 | structural maintenance of chromosomes flexible hinge domain containing 1 | 0.017 | ||
LIG1 | ligase I, DNA, ATP-dependent | 0.017 | ||
TAF10 | TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa | 0.017 | ||
RBM25 | RNA binding motif protein 25 | 0.017 | ||
TPR | translocated promoter region (to activated MET oncogene) | 0.016 | Fly | |
SRP9 | signal recognition particle 9kDa | 0.016 | ||
AHCTF1 | AT hook containing transcription factor 1 | 0.016 | ||
FOXO1 | forkhead box O1 | 0.016 | ||
POLR1A | polymerase (RNA) I polypeptide A, 194kDa | 0.016 | ||
SATB1 | SATB homeobox 1 | 0.015 | ||
CDKN2A | cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) | 0.015 | ||
NIPBL | Nipped-B homolog (Drosophila) | 0.015 | ||
FN3KRP | fructosamine 3 kinase related protein | 0.015 | ||
KIAA1377 | KIAA1377 | 0.015 | ||
SUPT3H | suppressor of Ty 3 homolog (S. cerevisiae) | 0.015 | ||
LCORL | ligand dependent nuclear receptor corepressor-like | 0.015 | ||
SOX13 | SRY (sex determining region Y)-box 13 | 0.015 | ||
CDCA4 | cell division cycle associated 4 | 0.015 | ||
RUNX1 | runt-related transcription factor 1 | 0.014 | ||
SMAD7 | SMAD family member 7 | 0.014 | ||
MYST2 | MYST histone acetyltransferase 2 | 0.014 | ||
CEP72 | centrosomal protein 72kDa | 0.014 | ||
IKZF1 | IKAROS family zinc finger 1 (Ikaros) | 0.014 | ||
USF1 | upstream transcription factor 1 | 0.014 | ||
C20orf20 | chromosome 20 open reading frame 20 | 0.013 | ||
CDYL | chromodomain protein, Y-like | 0.013 | ||
E2F3 | E2F transcription factor 3 | 0.013 | ||
CHD3 | chromodomain helicase DNA binding protein 3 | 0.013 | ||
KLF4 | Kruppel-like factor 4 (gut) | 0.013 | ||
TP53BP2 | tumor protein p53 binding protein, 2 | 0.013 | ||
RPA1 | replication protein A1, 70kDa | 0.013 | ||
AHR | aryl hydrocarbon receptor | 0.013 | ||
TAF6 | TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa | 0.013 | ||
MBNL1 | muscleblind-like (Drosophila) | 0.013 | ||
GINS4 | GINS complex subunit 4 (Sld5 homolog) | 0.013 | ||
TELO2 | TEL2, telomere maintenance 2, homolog (S. cerevisiae) | 0.012 | ||
ACACA | acetyl-CoA carboxylase alpha | 0.012 | ||
RRP8 | ribosomal RNA processing 8, methyltransferase, homolog (yeast) | 0.012 | ||
SCAF8 | SR-related CTD-associated factor 8 | 0.012 | ||
CDC45 | cell division cycle 45 homolog (S. cerevisiae) | 0.012 | ||
PPP2CA | protein phosphatase 2, catalytic subunit, alpha isozyme | 0.012 | ||
STRN3 | striatin, calmodulin binding protein 3 | 0.012 | ||
TCF3 | transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) | 0.012 | ||
SUPT16H | suppressor of Ty 16 homolog (S. cerevisiae) | 0.012 | Yeast | |
GABPB1 | GA binding protein transcription factor, beta subunit 1 | 0.012 | ||
CCNH | cyclin H | 0.012 | ||
TPP2 | tripeptidyl peptidase II | 0.011 | ||
CHD1L | chromodomain helicase DNA binding protein 1-like | 0.011 | ||
LGALS8 | lectin, galactoside-binding, soluble, 8 | 0.011 | ||
VPS72 | vacuolar protein sorting 72 homolog (S. cerevisiae) | 0.011 | ||
MED24 | mediator complex subunit 24 | 0.011 | ||
MED1 | mediator complex subunit 1 | 0.011 | ||
MEF2C | myocyte enhancer factor 2C | 0.011 | ||
RBM39 | RNA binding motif protein 39 | 0.011 | ||
JMY | junction mediating and regulatory protein, p53 cofactor | 0.011 | ||
MAGEA2 | melanoma antigen family A, 2 | 0.011 | ||
CNN3 | calponin 3, acidic | 0.011 | ||
CTR9 | Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) | 0.011 | Yeast | |
DICER1 | dicer 1, ribonuclease type III | 0.011 | ||
CUX1 | cut-like homeobox 1 | 0.011 | ||
ASF1B | ASF1 anti-silencing function 1 homolog B (S. cerevisiae) | 0.011 | ||
E2F1 | E2F transcription factor 1 | 0.011 | ||
AMD1 | adenosylmethionine decarboxylase 1 | 0.011 | ||
EIF4A2 | eukaryotic translation initiation factor 4A2 | 0.011 | ||
EID1 | EP300 interacting inhibitor of differentiation 1 | 0.011 | ||
TRIM33 | tripartite motif containing 33 | 0.011 | ||
ZNF689 | zinc finger protein 689 | 0.010 | ||
ZNF217 | zinc finger protein 217 | 0.010 | ||
MYST3 | MYST histone acetyltransferase (monocytic leukemia) 3 | 0.010 | ||
THAP11 | THAP domain containing 11 | 0.010 | ||
MCM5 | minichromosome maintenance complex component 5 | 0.010 | ||
TCF4 | transcription factor 4 | 0.010 |