IMP: Integrative Multi-species Prediction

Mus musculus

4 genes annotated in mouse

ribosomal small subunit biogenesis

A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis.

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Known genes in the process in mouseInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "ribosomal small subunit biogenesis"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "ribosomal small subunit biogenesis" (in gray)

Name	Description	Probability	Func Analog Organism
Eed	embryonic ectoderm development	0.935
Tsr1	TSR1, 20S rRNA accumulation, homolog (yeast)	0.879
Gnl3	guanine nucleotide binding protein-like 3 (nucleolar)	0.761
Rpgrip1l	Rpgrip1-like	0.545
Ddx21	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	0.479
Mki67ip	Mki67 (FHA domain) interacting nucleolar phosphoprotein	0.403
Rplp0	ribosomal protein, large, P0	0.397
Cirh1a	cirrhosis, autosomal recessive 1A (human)	0.379	Human Yeast
Gtpbp4	GTP binding protein 4	0.334
Wdr43	WD repeat domain 43	0.318	Yeast
Wdr74	WD repeat domain 74	0.313
Etf1	eukaryotic translation termination factor 1	0.264
Cebpz	CCAAT/enhancer binding protein zeta	0.250
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	0.231
Npm1	nucleophosmin 1	0.226
Rpl19	ribosomal protein L19	0.218
Rrp15	ribosomal RNA processing 15 homolog (S. cerevisiae)	0.213
Plrg1	pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	0.200
Rps3a	ribosomal protein S3A	0.198
Rpl11	ribosomal protein L11	0.198
Mybbp1a	MYB binding protein (P160) 1a	0.190
Rpl6	ribosomal protein L6	0.182
Eif1a	eukaryotic translation initiation factor 1A	0.175
Eif5	eukaryotic translation initiation factor 5	0.174
Nop2	NOP2 nucleolar protein homolog (yeast)	0.173
Polr1b	polymerase (RNA) I polypeptide B	0.172
Rplp1	ribosomal protein, large, P1	0.171
Rpl3	ribosomal protein L3	0.163
Eif2s1	eukaryotic translation initiation factor 2, subunit 1 alpha	0.159
Gm13654	predicted gene 13654	0.158
Zzz3	zinc finger, ZZ domain containing 3	0.149
Rrs1	RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	0.144
Rps3	ribosomal protein S3	0.141
Kti12	KTI12 homolog, chromatin associated (S. cerevisiae)	0.135
Ltv1	LTV1 homolog (S. cerevisiae)	0.134
Mak16	MAK16 homolog (S. cerevisiae)	0.112
Rpl4	ribosomal protein L4	0.112
Rpl8	ribosomal protein L8	0.108
Srm	spermidine synthase	0.105
Dis3	DIS3 mitotic control homolog (S. cerevisiae)	0.097
Ftsj3	FtsJ homolog 3 (E. coli)	0.097
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	0.095
Dcaf13	DDB1 and CUL4 associated factor 13	0.094	Yeast
Grwd1	glutamate-rich WD repeat containing 1	0.087
Rpl12	ribosomal protein L12	0.084
Rpsa	ribosomal protein SA	0.084
Gnb2l1	guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	0.082
Rps21	ribosomal protein S21	0.080
Tex10	testis expressed gene 10	0.075
Brix1	BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)	0.074
Rps5	ribosomal protein S5	0.073
Nmd3	NMD3 homolog (S. cerevisiae)	0.073
Rpl23	ribosomal protein L23	0.066
D19Bwg1357e	DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed	0.065
Hnrnpa1	heterogeneous nuclear ribonucleoprotein A1	0.065
Rps15	ribosomal protein S15	0.064
Eef1e1	eukaryotic translation elongation factor 1 epsilon 1	0.064
Per1	period homolog 1 (Drosophila)	0.062
Fam203a	family with sequence similarity 203, member A	0.060
Wdr46	WD repeat domain 46	0.058	Yeast
Ncl	nucleolin	0.057
Nsun2	NOL1/NOP2/Sun domain family member 2	0.056
Utp20	UTP20, small subunit (SSU) processome component, homolog (yeast)	0.055
Rpl14	ribosomal protein L14	0.055
Mrps18b	mitochondrial ribosomal protein S18B	0.054
Srsf7	serine/arginine-rich splicing factor 7	0.053
Rpl7	ribosomal protein L7	0.053
Rsl1d1	ribosomal L1 domain containing 1	0.051
Ddx10	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	0.050
Sdad1	SDA1 domain containing 1	0.049
Tars	threonyl-tRNA synthetase	0.049
Tbrg4	transforming growth factor beta regulated gene 4	0.047
Eif3a	eukaryotic translation initiation factor 3, subunit A	0.045
Syncrip	synaptotagmin binding, cytoplasmic RNA interacting protein	0.045
Ppp2ca	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	0.045
Nip7	nuclear import 7 homolog (S. cerevisiae)	0.045
Wdr55	WD repeat domain 55	0.045
Rps7	ribosomal protein S7	0.044
Rars	arginyl-tRNA synthetase	0.043
Ccdc86	coiled-coil domain containing 86	0.042
Fau	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	0.042
Dnajc2	DnaJ (Hsp40) homolog, subfamily C, member 2	0.041
Eif3b	eukaryotic translation initiation factor 3, subunit B	0.041
Fbl	fibrillarin	0.040
Rrp9	RRP9, small subunit (SSU) processome component, homolog (yeast)	0.038
Nufip1	nuclear fragile X mental retardation protein interacting protein 1	0.037
Wdr3	WD repeat domain 3	0.037	Yeast
Pwp1	PWP1 homolog (S. cerevisiae)	0.037
Ppan	peter pan homolog (Drosophila)	0.037
Eprs	glutamyl-prolyl-tRNA synthetase	0.037
Nop56	NOP56 ribonucleoprotein homolog (yeast)	0.036
Ipo7	importin 7	0.036
Rpl36a	ribosomal protein L36A	0.036
Eef1a1	eukaryotic translation elongation factor 1 alpha 1	0.035
Tra2b	transformer 2 beta homolog (Drosophila)	0.035
Eef1b2	eukaryotic translation elongation factor 1 beta 2	0.034
Gm10119	predicted gene 10119	0.034
Ddx3x	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	0.033
Wdr36	WD repeat domain 36	0.033
Pprc1	peroxisome proliferative activated receptor, gamma, coactivator-related 1	0.033
Ppp2r2a	protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	0.033
Rrp8	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	0.033
Rpl28	ribosomal protein L28	0.032
Rplp2	ribosomal protein, large P2	0.032
Nap1l1	nucleosome assembly protein 1-like 1	0.032
Elac2	elaC homolog 2 (E. coli)	0.032
Cnbp	cellular nucleic acid binding protein	0.031
Rcl1	RNA terminal phosphate cyclase-like 1	0.030
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	0.030
Rps14	ribosomal protein S14	0.030
Eif2s2	eukaryotic translation initiation factor 2, subunit 2 (beta)	0.029
Pus7l	pseudouridylate synthase 7 homolog (S. cerevisiae)-like	0.029
Rpl13a	ribosomal protein L13A	0.029
Riok2	RIO kinase 2 (yeast)	0.029
Rpl15	ribosomal protein L15	0.029
Wdr5	WD repeat domain 5	0.028
Ddx20	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	0.027
Taf1d	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	0.027
Rpl10	ribosomal protein 10	0.027
Ctdp1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	0.027
Rps15a	ribosomal protein S15A	0.027
Rps9	ribosomal protein S9	0.027	Yeast
Twistnb	TWIST neighbor	0.026
Nop16	NOP16 nucleolar protein homolog (yeast)	0.026
Abce1	ATP-binding cassette, sub-family E (OABP), member 1	0.026
Per2	period homolog 2 (Drosophila)	0.025
Noc3l	nucleolar complex associated 3 homolog (S. cerevisiae)	0.025
Ddx51	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	0.025
Hnrpdl	heterogeneous nuclear ribonucleoprotein D-like	0.025
Eif3e	eukaryotic translation initiation factor 3, subunit E	0.024
Smarcd1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	0.024
Smn1	survival motor neuron 1	0.024
Serbp1	serpine1 mRNA binding protein 1	0.023
Nubp1	nucleotide binding protein 1	0.023
Rrp1b	ribosomal RNA processing 1 homolog B (S. cerevisiae)	0.023
Ptpn2	protein tyrosine phosphatase, non-receptor type 2	0.023
Wdr75	WD repeat domain 75	0.023
Gnl2	guanine nucleotide binding protein-like 2 (nucleolar)	0.023
Smndc1	survival motor neuron domain containing 1	0.023
Pno1	partner of NOB1 homolog (S. cerevisiae)	0.023
Rpl27a	ribosomal protein L27A	0.023
2610027L16Rik	RIKEN cDNA 2610027L16 gene	0.022
Nop14	NOP14 nucleolar protein homolog (yeast)	0.022
Esf1	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	0.022
Mphosph10	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	0.021
Rpl37a	ribosomal protein L37a	0.021
Heatr1	HEAT repeat containing 1	0.021
Cbfb	core binding factor beta	0.021
Eif2s3x	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	0.021
Utp14a	UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	0.021
Smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	0.020
Dph5	DPH5 homolog (S. cerevisiae)	0.020
Znhit6	zinc finger, HIT type 6	0.020
Abt1	activator of basal transcription 1	0.020
Rbm34	RNA binding motif protein 34	0.020
Pwp2	PWP2 periodic tryptophan protein homolog (yeast)	0.019	Yeast
Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	0.019
Ssb	Sjogren syndrome antigen B	0.019
Rrp12	ribosomal RNA processing 12 homolog (S. cerevisiae)	0.019
Zc3h15	zinc finger CCCH-type containing 15	0.019
Npm3	nucleoplasmin 3	0.019
Nolc1	nucleolar and coiled-body phosphoprotein 1	0.018
Rpl18	ribosomal protein L18	0.018
Thumpd1	THUMP domain containing 1	0.018
Smyd5	SET and MYND domain containing 5	0.018
Matr3	matrin 3	0.018
Sf3b3	splicing factor 3b, subunit 3	0.018
Cops2	COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	0.018
Rpl22	ribosomal protein L22	0.018
Notch1	Notch gene homolog 1 (Drosophila)	0.018
Dohh	deoxyhypusine hydroxylase/monooxygenase	0.018
Jmjd6	jumonji domain containing 6	0.017
Ythdf2	YTH domain family 2	0.017
Dph2	DPH2 homolog (S. cerevisiae)	0.017
Rpf2	ribosome production factor 2 homolog (S. cerevisiae)	0.017
Ngdn	neuroguidin, EIF4E binding protein	0.017
Utp18	UTP18, small subunit (SSU) processome component, homolog (yeast)	0.017	Yeast
Utp3	UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	0.017
Psmd3	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	0.017
Rpl7a	ribosomal protein L7A	0.017
Krr1	KRR1, small subunit (SSU) processome component, homolog (yeast)	0.017
Metap2	methionine aminopeptidase 2	0.017
D10Wsu102e	DNA segment, Chr 10, Wayne State University 102, expressed	0.017
Rps4x	ribosomal protein S4, X-linked	0.017
Hmgn1	high mobility group nucleosomal binding domain 1	0.017
Lyar	Ly1 antibody reactive clone	0.017
Eif6	eukaryotic translation initiation factor 6	0.016
Btaf1	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)	0.016
Spata5	spermatogenesis associated 5	0.016
Fbxw11	F-box and WD-40 domain protein 11	0.016
Aen	apoptosis enhancing nuclease	0.016
Yrdc	yrdC domain containing (E.coli)	0.016
Rps17	ribosomal protein S17	0.016
Zfp259	zinc finger protein 259	0.016
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	0.016
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	0.016
Rps23	ribosomal protein S23	0.016	Yeast
Rpl13	ribosomal protein L13	0.015
Rps8	ribosomal protein S8	0.015	Yeast
Exosc1	exosome component 1	0.015
Cct2	chaperonin containing Tcp1, subunit 2 (beta)	0.015
Ddx56	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	0.015
Bop1	block of proliferation 1	0.015
Eif2b2	eukaryotic translation initiation factor 2B, subunit 2 beta	0.015
Utp15	UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.015	Yeast
Rpl26	ribosomal protein L26	0.015
Rps24	ribosomal protein S24	0.015	Human
Dkc1	dyskeratosis congenita 1, dyskerin homolog (human)	0.015
Pak1ip1	PAK1 interacting protein 1	0.014
Isg20l2	interferon stimulated exonuclease gene 20-like 2	0.014
Chordc1	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	0.014
Psmd11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	0.014
Eif3f	eukaryotic translation initiation factor 3, subunit F	0.014
Tdg	thymine DNA glycosylase	0.014
Naa25	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	0.014
Rbm17	RNA binding motif protein 17	0.014
Ino80e	INO80 complex subunit E	0.014
Nol11	nucleolar protein 11	0.014
Rps13	ribosomal protein S13	0.014
Eef2	eukaryotic translation elongation factor 2	0.014
Diexf	digestive organ expansion factor homolog (zebrafish)	0.013
Cops8	COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	0.013
Rap1b	RAS related protein 1b	0.013
Vprbp	Vpr (HIV-1) binding protein	0.013
Ccar1	cell division cycle and apoptosis regulator 1	0.013
Srsf6	serine/arginine-rich splicing factor 6	0.013
Nol8	nucleolar protein 8	0.013
Zfp330	zinc finger protein 330	0.013
LOC100044627	60S ribosomal protein L23-like	0.013
Orc2	origin recognition complex, subunit 2	0.013
Llph	LLP homolog, long-term synaptic facilitation (Aplysia)	0.013
Rnmt	RNA (guanine-7-) methyltransferase	0.013
2410089E03Rik	RIKEN cDNA 2410089E03 gene	0.013
Eif3d	eukaryotic translation initiation factor 3, subunit D	0.013
Ranbp2	RAN binding protein 2	0.012
Rara	retinoic acid receptor, alpha	0.012
Pus1	pseudouridine synthase 1	0.012
BC027231	cDNA sequence BC027231	0.012
Bms1	BMS1 homolog, ribosome assembly protein (yeast)	0.012
Pes1	pescadillo homolog 1, containing BRCT domain (zebrafish)	0.012
Nop58	NOP58 ribonucleoprotein homolog (yeast)	0.012	Yeast
Nom1	nucleolar protein with MIF4G domain 1	0.012
Prmt6	protein arginine N-methyltransferase 6	0.012
Gm5805	predicted gene 5805	0.012
March7	membrane-associated ring finger (C3HC4) 7	0.012
Rps29	ribosomal protein S29	0.012
Noc4l	nucleolar complex associated 4 homolog (S. cerevisiae)	0.012
Rbm42	RNA binding motif protein 42	0.012
Dimt1	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	0.012
Rps26	ribosomal protein S26	0.012
Igh	immunoglobulin heavy chain complex	0.012
Cdk8	cyclin-dependent kinase 8	0.012
Gm10294	predicted pseudogene 10294	0.012
Ovca2	candidate tumor suppressor in ovarian cancer 2	0.012
Exosc4	exosome component 4	0.012
Myc	myelocytomatosis oncogene	0.012
Zfp131	zinc finger protein 131	0.011
Rpl35	ribosomal protein L35	0.011
Adrm1	adhesion regulating molecule 1	0.011
Klf7	Kruppel-like factor 7 (ubiquitous)	0.011
Lsg1	large subunit GTPase 1 homolog (S. cerevisiae)	0.011
Imp3	IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.011
Ptges3	prostaglandin E synthase 3 (cytosolic)	0.011
Rps16	ribosomal protein S16	0.011
Rpl23a	ribosomal protein L23A	0.011
Surf6	surfeit gene 6	0.011
Rbm19	RNA binding motif protein 19	0.011	Yeast
Pcna	proliferating cell nuclear antigen	0.011
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	0.011
Gpatch4	G patch domain containing 4	0.011
Rrp7a	ribosomal RNA processing 7 homolog A (S. cerevisiae)	0.011
Rnmtl1	RNA methyltransferase like 1	0.011
Thumpd3	THUMP domain containing 3	0.011
Ddx5	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	0.011
Bax	BCL2-associated X protein	0.011
Axin1	axin 1	0.011
Ddx18	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	0.011	Yeast
Prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast)	0.011
Xrn2	5'-3' exoribonuclease 2	0.011
Nsun5	NOL1/NOP2/Sun domain family, member 5	0.011
Magoh	mago-nashi homolog, proliferation-associated (Drosophila)	0.011
Mettl13	methyltransferase like 13	0.011
Zfp593	zinc finger protein 593	0.011
Arhgap1	Rho GTPase activating protein 1	0.011
Pdcd11	programmed cell death 11	0.011	Yeast
Dbr1	debranching enzyme homolog 1 (S. cerevisiae)	0.011
Eif5b	eukaryotic translation initiation factor 5B	0.011
Rg9mtd2	RNA (guanine-9-) methyltransferase domain containing 2	0.011
Blnk	B-cell linker	0.011
Bysl	bystin-like	0.011
Rabggtb	RAB geranylgeranyl transferase, b subunit	0.010
Ldb1	LIM domain binding 1	0.010
Znhit2-ps	zinc finger, HIT domain containing 2, pseudogene	0.010
Exosc5	exosome component 5	0.010
Umps	uridine monophosphate synthetase	0.010
Cse1l	chromosome segregation 1-like (S. cerevisiae)	0.010
Tiprl	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	0.010
H3f3b	H3 histone, family 3B	0.010
Rpl32	ribosomal protein L32	0.010
Prpf38a	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	0.010
Alg3	asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)	0.010
Pak2	p21 protein (Cdc42/Rac)-activated kinase 2	0.010
Xab2	XPA binding protein 2	0.010
Gar1	GAR1 ribonucleoprotein homolog (yeast)	0.010
Snhg5	small nucleolar RNA host gene 5	0.010
Rps28	ribosomal protein S28	0.010
Rbm8a	RNA binding motif protein 8a	0.010
Xpo4	exportin 4	0.010
Ctu2	cytosolic thiouridylase subunit 2 homolog (S. pombe)	0.010
Polr2b	polymerase (RNA) II (DNA directed) polypeptide B	0.010