IMP
Process View
transcription coupled nucleotide excision repair
The nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway.
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In addition to gene-name show these genes:
Click on a gene's description to view its network relationships with genes known to be involved in "transcription coupled nucleotide excision repair"
| Name | Description | Probability | Func Analog Organism | |
|---|---|---|---|---|
| Srsf9 | serine/arginine-rich splicing factor 9 | 0.674 | ||
| Ssrp1 | structure specific recognition protein 1 | 0.444 | ||
| Snrnp40 | small nuclear ribonucleoprotein 40 (U5) | 0.323 | ||
| Ewsr1 | Ewing sarcoma breakpoint region 1 | 0.282 | ||
| Rnps1 | ribonucleic acid binding protein S1 | 0.247 | ||
| Srrt | serrate RNA effector molecule homolog (Arabidopsis) | 0.247 | ||
| Prmt1 | protein arginine N-methyltransferase 1 | 0.230 | ||
| Anp32b | acidic (leucine-rich) nuclear phosphoprotein 32 family, member B | 0.201 | ||
| Trim28 | tripartite motif-containing 28 | 0.177 | ||
| Hnrnpab | heterogeneous nuclear ribonucleoprotein A/B | 0.157 | ||
| Ppm1g | protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform | 0.154 | ||
| Ran | RAN, member RAS oncogene family | 0.126 | ||
| Eftud2 | elongation factor Tu GTP binding domain containing 2 | 0.115 | ||
| Thoc4 | THO complex 4 | 0.114 | Yeast | |
| Tdg | thymine DNA glycosylase | 0.104 | ||
| Ptma | prothymosin alpha | 0.093 | ||
| Fbl | fibrillarin | 0.089 | ||
| Gar1 | GAR1 ribonucleoprotein homolog (yeast) | 0.082 | ||
| Pabpn1 | poly(A) binding protein, nuclear 1 | 0.079 | ||
| Nup93 | nucleoporin 93 | 0.066 | ||
| Impdh2 | inosine 5'-phosphate dehydrogenase 2 | 0.053 | ||
| Acin1 | apoptotic chromatin condensation inducer 1 | 0.053 | ||
| Banf1 | barrier to autointegration factor 1 | 0.052 | ||
| Cct3 | chaperonin containing Tcp1, subunit 3 (gamma) | 0.051 | ||
| Ppp4c | protein phosphatase 4, catalytic subunit | 0.047 | ||
| Srsf2 | serine/arginine-rich splicing factor 2 | 0.047 | ||
| Tuba1b | tubulin, alpha 1B | 0.043 | ||
| 1500001M20Rik | RIKEN cDNA 1500001M20 gene | 0.042 | ||
| Rcc2 | regulator of chromosome condensation 2 | 0.041 | ||
| Ranbp1 | RAN binding protein 1 | 0.040 | ||
| Safb | scaffold attachment factor B | 0.039 | ||
| Cdk9 | cyclin-dependent kinase 9 (CDC2-related kinase) | 0.039 | ||
| Sf3b3 | splicing factor 3b, subunit 3 | 0.038 | ||
| U2af1 | U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 | 0.037 | ||
| Set | SET nuclear oncogene | 0.035 | ||
| Eif3g | eukaryotic translation initiation factor 3, subunit G | 0.035 | ||
| Mcm7 | minichromosome maintenance deficient 7 (S. cerevisiae) | 0.035 | ||
| Cct2 | chaperonin containing Tcp1, subunit 2 (beta) | 0.034 | ||
| Hnrnpm | heterogeneous nuclear ribonucleoprotein M | 0.033 | ||
| Refbp2 | RNA and export factor binding protein 2 | 0.032 | Yeast | |
| A430005L14Rik | RIKEN cDNA A430005L14 gene | 0.032 | ||
| Senp3 | SUMO/sentrin specific peptidase 3 | 0.032 | ||
| Apex1 | apurinic/apyrimidinic endonuclease 1 | 0.031 | ||
| Gtf2f1 | general transcription factor IIF, polypeptide 1 | 0.029 | ||
| Eif4a3 | eukaryotic translation initiation factor 4A3 | 0.029 | ||
| Smarca4 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 | 0.029 | ||
| Lsm2 | LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) | 0.029 | ||
| Nup107 | nucleoporin 107 | 0.027 | ||
| Srsf4 | serine/arginine-rich splicing factor 4 | 0.027 | ||
| Ddx54 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 | 0.026 | ||
| Ncl | nucleolin | 0.026 | ||
| Puf60 | poly-U binding splicing factor 60 | 0.025 | ||
| Ipo5 | importin 5 | 0.024 | ||
| Dnmt1 | DNA methyltransferase (cytosine-5) 1 | 0.024 | ||
| Rbm14 | RNA binding motif protein 14 | 0.023 | ||
| Nup62 | nucleoporin 62 | 0.023 | ||
| Tbcb | tubulin folding cofactor B | 0.023 | ||
| Cks1b | CDC28 protein kinase 1b | 0.023 | ||
| Cdk2ap1 | CDK2 (cyclin-dependent kinase 2)-associated protein 1 | 0.022 | ||
| Cpsf1 | cleavage and polyadenylation specific factor 1 | 0.022 | ||
| Ctps | cytidine 5'-triphosphate synthase | 0.022 | ||
| Nxt1 | NTF2-related export protein 1 | 0.021 | ||
| Tubb5 | tubulin, beta 5 | 0.021 | ||
| Ncbp1 | nuclear cap binding protein subunit 1 | 0.021 | ||
| Prpf8 | pre-mRNA processing factor 8 | 0.021 | ||
| Cdk4 | cyclin-dependent kinase 4 | 0.020 | ||
| Hn1 | hematological and neurological expressed sequence 1 | 0.019 | ||
| Cdca4 | cell division cycle associated 4 | 0.018 | ||
| Dtymk | deoxythymidylate kinase | 0.018 | ||
| Taf5l | TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor | 0.018 | ||
| Xab2 | XPA binding protein 2 | 0.018 | ||
| 2700094K13Rik | RIKEN cDNA 2700094K13 gene | 0.017 | ||
| Enoph1 | enolase-phosphatase 1 | 0.017 | ||
| Nop56 | NOP56 ribonucleoprotein homolog (yeast) | 0.017 | ||
| Snrpa | small nuclear ribonucleoprotein polypeptide A | 0.017 | ||
| U2af2 | U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 | 0.016 | ||
| Sltm | SAFB-like, transcription modulator | 0.016 | ||
| Qrich1 | glutamine-rich 1 | 0.016 | ||
| Ppan | peter pan homolog (Drosophila) | 0.016 | ||
| Odc1 | ornithine decarboxylase, structural 1 | 0.016 | ||
| Sfpq | splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) | 0.016 | ||
| H2afy | H2A histone family, member Y | 0.015 | ||
| Ppp1r8 | protein phosphatase 1, regulatory (inhibitor) subunit 8 | 0.015 | ||
| 2310036O22Rik | RIKEN cDNA 2310036O22 gene | 0.015 | ||
| Eif3c | eukaryotic translation initiation factor 3, subunit C | 0.015 | ||
| Brd2 | bromodomain containing 2 | 0.015 | ||
| Rbm10 | RNA binding motif protein 10 | 0.015 | ||
| Hnrnpd | heterogeneous nuclear ribonucleoprotein D | 0.014 | ||
| Cherp | calcium homeostasis endoplasmic reticulum protein | 0.014 | ||
| Pprc1 | peroxisome proliferative activated receptor, gamma, coactivator-related 1 | 0.014 | ||
| Noc4l | nucleolar complex associated 4 homolog (S. cerevisiae) | 0.014 | ||
| Cox4nb | COX4 neighbor | 0.014 | ||
| Siva1 | SIVA1, apoptosis-inducing factor | 0.014 | ||
| Rbmxrt | RNA binding motif protein, X chromosome retrogene | 0.014 | ||
| Dhx16 | DEAH (Asp-Glu-Ala-His) box polypeptide 16 | 0.014 | ||
| Fam192a | family with sequence similarity 192, member A | 0.014 | ||
| Pa2g4 | proliferation-associated 2G4 | 0.014 | ||
| Nxf1 | nuclear RNA export factor 1 homolog (S. cerevisiae) | 0.014 | ||
| Gtf3c2 | general transcription factor IIIC, polypeptide 2, beta | 0.014 | ||
| Pcbp1 | poly(rC) binding protein 1 | 0.013 | ||
| Usp39 | ubiquitin specific peptidase 39 | 0.013 | ||
| Nup85 | nucleoporin 85 | 0.013 | ||
| Lyar | Ly1 antibody reactive clone | 0.013 | ||
| Tcof1 | Treacher Collins Franceschetti syndrome 1, homolog | 0.013 | ||
| Nfyc | nuclear transcription factor-Y gamma | 0.013 | ||
| Hnrnpl | heterogeneous nuclear ribonucleoprotein L | 0.013 | ||
| Fen1 | flap structure specific endonuclease 1 | 0.013 | ||
| Exosc10 | exosome component 10 | 0.012 | ||
| Rnf8 | ring finger protein 8 | 0.012 | ||
| Anapc5 | anaphase-promoting complex subunit 5 | 0.012 | ||
| Rrp1b | ribosomal RNA processing 1 homolog B (S. cerevisiae) | 0.012 | ||
| Rsl24d1 | ribosomal L24 domain containing 1 | 0.012 | ||
| Snrpb | small nuclear ribonucleoprotein B | 0.012 | ||
| Rpa1 | replication protein A1 | 0.012 | ||
| Yeats4 | YEATS domain containing 4 | 0.012 | ||
| Psat1 | phosphoserine aminotransferase 1 | 0.012 | ||
| Psmc4 | proteasome (prosome, macropain) 26S subunit, ATPase, 4 | 0.011 | ||
| Kdm2b | lysine (K)-specific demethylase 2B | 0.011 | ||
| Pom121 | nuclear pore membrane protein 121 | 0.011 | ||
| Sf3a1 | splicing factor 3a, subunit 1 | 0.011 | ||
| Prpf6 | PRP6 pre-mRNA splicing factor 6 homolog (yeast) | 0.011 | ||
| Pgd | phosphogluconate dehydrogenase | 0.011 | ||
| Ctbp1 | C-terminal binding protein 1 | 0.011 | ||
| Xpo6 | exportin 6 | 0.011 | ||
| Hnrnpa0 | heterogeneous nuclear ribonucleoprotein A0 | 0.011 | ||
| Isg20l2 | interferon stimulated exonuclease gene 20-like 2 | 0.011 | ||
| Bms1 | BMS1 homolog, ribosome assembly protein (yeast) | 0.011 | ||
| Ppp4r1 | protein phosphatase 4, regulatory subunit 1 | 0.011 | ||
| Elp2 | elongation protein 2 homolog (S. cerevisiae) | 0.011 | ||
| Pcbp2 | poly(rC) binding protein 2 | 0.010 | ||
| Gm5806 | predicted gene 5806 | 0.010 | ||
| Khdrbs1 | KH domain containing, RNA binding, signal transduction associated 1 | 0.010 | ||
| Ubtf | upstream binding transcription factor, RNA polymerase I | 0.010 | ||
| Thoc3 | THO complex 3 | 0.010 | ||
| Rdbp | RD RNA-binding protein | 0.010 | ||
| 2410002F23Rik | RIKEN cDNA 2410002F23 gene | 0.010 |