IMP: Integrative Multi-species Prediction

Mus musculus

9 genes annotated in mouse

transcription elongation from rna polymerase ii promoter

The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.

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Known genes in the process in mouseInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "transcription elongation from rna polymerase ii promoter"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "transcription elongation from rna polymerase ii promoter" (in gray)

Name	Description	Probability	Func Analog Organism
Eed	embryonic ectoderm development	0.588
Arid1a	AT rich interactive domain 1A (SWI-like)	0.371
Mtf2	metal response element binding transcription factor 2	0.354
Smarcc1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	0.312
Jarid2	jumonji, AT rich interactive domain 2	0.253
Ppm1g	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	0.222
Polr2a	polymerase (RNA) II (DNA directed) polypeptide A	0.212
Ep400	E1A binding protein p400	0.208
Smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.191	Yeast
Kdm5b	lysine (K)-specific demethylase 5B	0.146
Trrap	transformation/transcription domain-associated protein	0.140
Crebbp	CREB binding protein	0.123
Arid1b	AT rich interactive domain 1B (SWI-like)	0.117
Brd4	bromodomain containing 4	0.082	Human
Rnf111	ring finger 111	0.075
Suz12	suppressor of zeste 12 homolog (Drosophila)	0.067
Psmc2	proteasome (prosome, macropain) 26S subunit, ATPase 2	0.056
Hand1	heart and neural crest derivatives expressed transcript 1	0.048	Fly
Hdac4	histone deacetylase 4	0.047
Smad7	MAD homolog 7 (Drosophila)	0.042
Shh	sonic hedgehog	0.039
Rnf44	ring finger protein 44	0.038
Hand2	heart and neural crest derivatives expressed transcript 2	0.037	Fly
Axin1	axin 1	0.037
Bmp7	bone morphogenetic protein 7	0.036
Msx1	homeobox, msh-like 1	0.035
Siva1	SIVA1, apoptosis-inducing factor	0.034
Lsm3	LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)	0.033
Phf12	PHD finger protein 12	0.033
Snrnp40	small nuclear ribonucleoprotein 40 (U5)	0.032
Srrt	serrate RNA effector molecule homolog (Arabidopsis)	0.031
Psmd6	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	0.031
Ewsr1	Ewing sarcoma breakpoint region 1	0.031
Tcfap2a	transcription factor AP-2, alpha	0.029
Aebp2	AE binding protein 2	0.029
Sox9	SRY-box containing gene 9	0.029
Pik3ca	phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	0.029
Safb	scaffold attachment factor B	0.027
Nkx2-5	NK2 transcription factor related, locus 5 (Drosophila)	0.025
Msl1	male-specific lethal 1 homolog (Drosophila)	0.025
Scaf8	SR-related CTD-associated factor 8	0.025
Gsk3b	glycogen synthase kinase 3 beta	0.025
Ncor2	nuclear receptor co-repressor 2	0.024
Ran	RAN, member RAS oncogene family	0.023
Vhl	von Hippel-Lindau tumor suppressor	0.023
Cdk9	cyclin-dependent kinase 9 (CDC2-related kinase)	0.023	Fly
Trim28	tripartite motif-containing 28	0.023
Acin1	apoptotic chromatin condensation inducer 1	0.022
Atxn7l3	ataxin 7-like 3	0.021
Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	0.020
Brd2	bromodomain containing 2	0.020
Srsf2	serine/arginine-rich splicing factor 2	0.020
Foxc1	forkhead box C1	0.019
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	0.019
Psmd4	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	0.019
Tbcb	tubulin folding cofactor B	0.019
Xpo6	exportin 6	0.019
Otx2	orthodenticle homolog 2 (Drosophila)	0.018
Hnrnpm	heterogeneous nuclear ribonucleoprotein M	0.018
Rrp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	0.018
Ror2	receptor tyrosine kinase-like orphan receptor 2	0.018
Pcnxl3	pecanex-like 3 (Drosophila)	0.018
Psmd13	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	0.018
Cox4nb	COX4 neighbor	0.017
Gli3	GLI-Kruppel family member GLI3	0.017
Zfp830	zinc finger protein 830	0.017
Lef1	lymphoid enhancer binding factor 1	0.017
Tgfb2	transforming growth factor, beta 2	0.017
Hcfc1	host cell factor C1	0.017
Ywhae	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	0.016
Kras	v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	0.016
Zfp592	zinc finger protein 592	0.016
Dmap1	DNA methyltransferase 1-associated protein 1	0.016
Puf60	poly-U binding splicing factor 60	0.015
Gata4	GATA binding protein 4	0.015
Psmd3	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	0.015
Tbx3	T-box 3	0.015
Hdac7	histone deacetylase 7	0.015
Safb2	scaffold attachment factor B2	0.014
Helz	helicase with zinc finger domain	0.014
Stk38	serine/threonine kinase 38	0.014
Cct3	chaperonin containing Tcp1, subunit 3 (gamma)	0.014
Psmc3	proteasome (prosome, macropain) 26S subunit, ATPase 3	0.014
Psmc4	proteasome (prosome, macropain) 26S subunit, ATPase, 4	0.014
Hn1	hematological and neurological expressed sequence 1	0.014
Smarca2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	0.014	Yeast
Zfp740	zinc finger protein 740	0.014
Arid2	AT rich interactive domain 2 (ARID, RFX-like)	0.014
Prrx1	paired related homeobox 1	0.013
Uba2	ubiquitin-like modifier activating enzyme 2	0.013
Prr12	proline rich 12	0.013
Mecp2	methyl CpG binding protein 2	0.013
Smarcb1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	0.013
Fbrs	fibrosin	0.012
Ezh2	enhancer of zeste homolog 2 (Drosophila)	0.012
Casc3	cancer susceptibility candidate 3	0.012
Hdac5	histone deacetylase 5	0.012
Tshz1	teashirt zinc finger family member 1	0.012
Fgf8	fibroblast growth factor 8	0.012
Matr3	matrin 3	0.012
Eif4a3	eukaryotic translation initiation factor 4A3	0.012
Bptf	bromodomain PHD finger transcription factor	0.012
Rbbp4	retinoblastoma binding protein 4	0.011
Birc5	baculoviral IAP repeat-containing 5	0.011
Ctr9	Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.011	Human Yeast
Thoc4	THO complex 4	0.011
Ppp2ca	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	0.011
Ncdn	neurochondrin	0.011
Usp7	ubiquitin specific peptidase 7	0.011
Cic	capicua homolog (Drosophila)	0.010
Cdc73	cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.010	Human Zebrafish
Foxc2	forkhead box C2	0.010
Lsm14a	LSM14 homolog A (SCD6, S. cerevisiae)	0.010
Eftud2	elongation factor Tu GTP binding domain containing 2	0.010
Zbtb20	zinc finger and BTB domain containing 20	0.010