IMP: Integrative Multi-species Prediction

Mus musculus

8 genes annotated in mouse

Multi-species View

regulation of alternative mrna splicing via spliceosome

GO:0000381

Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.

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Known genes in the process in mouseInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "regulation of alternative mrna splicing via spliceosome"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "regulation of alternative mrna splicing via spliceosome" (in gray)

Name	Description	Probability	Func Analog Organism
Srsf7	serine/arginine-rich splicing factor 7	0.905
Hnrnph1	heterogeneous nuclear ribonucleoprotein H1	0.878
Hnrpdl	heterogeneous nuclear ribonucleoprotein D-like	0.840	Fly
Sfpq	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	0.808
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	0.755	Fly
Luc7l2	LUC7-like 2 (S. cerevisiae)	0.745
Hnrnpk	heterogeneous nuclear ribonucleoprotein K	0.695
Ddx5	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	0.678	Human Fly
Hnrnpa1	heterogeneous nuclear ribonucleoprotein A1	0.624	Fly
Hnrnpf	heterogeneous nuclear ribonucleoprotein F	0.543
Srsf1	serine/arginine-rich splicing factor 1	0.472
Sf3b1	splicing factor 3b, subunit 1	0.419
Pabpn1	poly(A) binding protein, nuclear 1	0.305
Srsf11	serine/arginine-rich splicing factor 11	0.247	Fly
Pnn	pinin	0.247
Fubp1	far upstream element (FUSE) binding protein 1	0.204	Fly
Srsf6	serine/arginine-rich splicing factor 6	0.194	Human Fly
Srsf2	serine/arginine-rich splicing factor 2	0.189
Prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	0.181
Fus	fusion, derived from t(12;16) malignant liposarcoma (human)	0.157
Magoh	mago-nashi homolog, proliferation-associated (Drosophila)	0.155	Human
Luc7l3	LUC7-like 3 (S. cerevisiae)	0.137
Sfrs18	serine/arginine-rich splicing factor 18	0.119
Srsf3	serine/arginine-rich splicing factor 3	0.116
Ewsr1	Ewing sarcoma breakpoint region 1	0.108
Tra2b	transformer 2 beta homolog (Drosophila)	0.107	Human Fly
Ccnl1	cyclin L1	0.105
Srrt	serrate RNA effector molecule homolog (Arabidopsis)	0.104
Nktr	natural killer tumor recognition sequence	0.097
Dhx9	DEAH (Asp-Glu-Ala-His) box polypeptide 9	0.094
Mat2a	methionine adenosyltransferase II, alpha	0.092
Tra2a	transformer 2 alpha homolog (Drosophila)	0.080	Fly
Zc3h11a	zinc finger CCCH type containing 11A	0.079
Sltm	SAFB-like, transcription modulator	0.072	Fly
Safb	scaffold attachment factor B	0.071
Rbmxrt	RNA binding motif protein, X chromosome retrogene	0.070	Rat
Hnrnpm	heterogeneous nuclear ribonucleoprotein M	0.069
Tardbp	TAR DNA binding protein	0.069
Thrap3	thyroid hormone receptor associated protein 3	0.067
Srrm1	serine/arginine repetitive matrix 1	0.065
Thoc2	THO complex 2	0.062
Arglu1	arginine and glutamate rich 1	0.062
H3f3b	H3 histone, family 3B	0.061
Pum1	pumilio 1 (Drosophila)	0.061
Eed	embryonic ectoderm development	0.054
Srsf5	serine/arginine-rich splicing factor 5	0.053	Fly
Khdrbs1	KH domain containing, RNA binding, signal transduction associated 1	0.053	Fly
Srek1	splicing regulatory glutamine/lysine-rich protein 1	0.049	Fly
Ctcf	CCCTC-binding factor	0.049
Safb2	scaffold attachment factor B2	0.048	Fly
2500003M10Rik	RIKEN cDNA 2500003M10 gene	0.047
Raver2	ribonucleoprotein, PTB-binding 2	0.047
Acin1	apoptotic chromatin condensation inducer 1	0.045
Rbm39	RNA binding motif protein 39	0.045	Fly
Ddx3x	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	0.043
Akap8	A kinase (PRKA) anchor protein 8	0.042
Ccar1	cell division cycle and apoptosis regulator 1	0.041
Ylpm1	YLP motif containing 1	0.041
Ush1g	Usher syndrome 1G homolog (human)	0.040
Luc7l	Luc7 homolog (S. cerevisiae)-like	0.040
Nxf1	nuclear RNA export factor 1 homolog (S. cerevisiae)	0.040
Hnrnph3	heterogeneous nuclear ribonucleoprotein H3	0.039
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	0.038
Hnrnpa3	heterogeneous nuclear ribonucleoprotein A3	0.037	Fly
Hnrnpd	heterogeneous nuclear ribonucleoprotein D	0.037	Fly
Rbm8a	RNA binding motif protein 8a	0.036	Human
Hnrnpa0	heterogeneous nuclear ribonucleoprotein A0	0.036
Hnrnpab	heterogeneous nuclear ribonucleoprotein A/B	0.035	Fly
Fnbp4	formin binding protein 4	0.034
Srsf9	serine/arginine-rich splicing factor 9	0.033
Snrnp70	small nuclear ribonucleoprotein 70 (U1)	0.033	Fly
Ddx39b	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	0.030	Fly
Exosc10	exosome component 10	0.030
Prmt1	protein arginine N-methyltransferase 1	0.028
Ina	internexin neuronal intermediate filament protein, alpha	0.027
Dhx15	DEAH (Asp-Glu-Ala-His) box polypeptide 15	0.026
Rnps1	ribonucleic acid binding protein S1	0.026	Human
Matr3	matrin 3	0.025
Gar1	GAR1 ribonucleoprotein homolog (yeast)	0.025
Smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.025
Insm1	insulinoma-associated 1	0.025
Sf3a3	splicing factor 3a, subunit 3	0.025
Hcfc1	host cell factor C1	0.025
Npm1	nucleophosmin 1	0.025
Sfswap	splicing factor, suppressor of white-apricot homolog (Drosophila)	0.024
Trrap	transformation/transcription domain-associated protein	0.024
Prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast)	0.024
Ogt	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	0.024
Srrm2	serine/arginine repetitive matrix 2	0.024	Mouse
Erh	enhancer of rudimentary homolog (Drosophila)	0.023
Qrich1	glutamine-rich 1	0.022
Wsb1	WD repeat and SOCS box-containing 1	0.022
Usp7	ubiquitin specific peptidase 7	0.021
Nono	non-POU-domain-containing, octamer binding protein	0.020
Ythdc1	YTH domain containing 1	0.020
Rbm25	RNA binding motif protein 25	0.020	Human Fly
Wtap	Wilms' tumour 1-associating protein	0.020	Human Fly
Prpf38a	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	0.020
Ash1l	ash1 (absent, small, or homeotic)-like (Drosophila)	0.020
Thoc4	THO complex 4	0.020
Prrc2c	proline-rich coiled-coil 2C	0.019
Tia1	cytotoxic granule-associated RNA binding protein 1	0.019	Fly
Zfp445	zinc finger protein 445	0.019
2410002F23Rik	RIKEN cDNA 2410002F23 gene	0.018
Ppp4c	protein phosphatase 4, catalytic subunit	0.018
Brd4	bromodomain containing 4	0.017
Actl6a	actin-like 6A	0.016
Snrnp40	small nuclear ribonucleoprotein 40 (U5)	0.016
Elavl1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	0.015	Worm
Pax7	paired box gene 7	0.015
Eif4g1	eukaryotic translation initiation factor 4, gamma 1	0.015
Dazap1	DAZ associated protein 1	0.015
Hmgn1	high mobility group nucleosomal binding domain 1	0.015
Pcbp1	poly(rC) binding protein 1	0.015
Mtf2	metal response element binding transcription factor 2	0.015
Pitx2	paired-like homeodomain transcription factor 2	0.015
Mll3	myeloid/lymphoid or mixed-lineage leukemia 3	0.014
Taf1d	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	0.014
Rbm3	RNA binding motif protein 3	0.014
Myf5	myogenic factor 5	0.014	Mouse
Ctbp1	C-terminal binding protein 1	0.014
1110004F10Rik	RIKEN cDNA 1110004F10 gene	0.014
Ywhae	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	0.014
Ss18	synovial sarcoma translocation, Chromosome 18	0.014
Syncrip	synaptotagmin binding, cytoplasmic RNA interacting protein	0.014
Ppp1r8	protein phosphatase 1, regulatory (inhibitor) subunit 8	0.013
Ncoa5	nuclear receptor coactivator 5	0.013
Ptma	prothymosin alpha	0.013
Rsrc2	arginine/serine-rich coiled-coil 2	0.013
Neurod1	neurogenic differentiation 1	0.013
Rbm12	RNA binding motif protein 12	0.012
Ythdf2	YTH domain family 2	0.012
Xab2	XPA binding protein 2	0.012
Dmap1	DNA methyltransferase 1-associated protein 1	0.012
Set	SET nuclear oncogene	0.012
Tcerg1	transcription elongation regulator 1 (CA150)	0.012
Six1	sine oculis-related homeobox 1 homolog (Drosophila)	0.012
Elavl2	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	0.012	Worm
Sept3	septin 3	0.012
Ngdn	neuroguidin, EIF4E binding protein	0.012
Ankrd10	ankyrin repeat domain 10	0.012
Bclaf1	BCL2-associated transcription factor 1	0.012
Cxxc1	CXXC finger 1 (PHD domain)	0.011
Isg20l2	interferon stimulated exonuclease gene 20-like 2	0.011
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	0.011
2810403A07Rik	RIKEN cDNA 2810403A07 gene	0.011
Clk4	CDC like kinase 4	0.011
Kdm1a	lysine (K)-specific demethylase 1A	0.011
Sf1	splicing factor 1	0.011
Rbm5	RNA binding motif protein 5	0.011	Human
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	0.011
Cd2bp2	CD2 antigen (cytoplasmic tail) binding protein 2	0.011
Stk38	serine/threonine kinase 38	0.010
Rbm22	RNA binding motif protein 22	0.010	Fly
Chd4	chromodomain helicase DNA binding protein 4	0.010
Ddx17	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	0.010	Fly
Larp7	La ribonucleoprotein domain family, member 7	0.010
Nfyc	nuclear transcription factor-Y gamma	0.010
Morf4l1	mortality factor 4 like 1	0.010
Rbmx	RNA binding motif protein, X chromosome	0.010	Human
Rbm10	RNA binding motif protein 10	0.010