IMP: Integrative Multi-species Prediction

Mus musculus

12 genes annotated in mouse

alternative mrna splicing via spliceosome

The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition.

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Known genes in the process in mouseInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "alternative mrna splicing via spliceosome"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "alternative mrna splicing via spliceosome" (in gray)

Name	Description	Probability	Func Analog Organism
Hnrpdl	heterogeneous nuclear ribonucleoprotein D-like	0.987	Fly
Hnrnph1	heterogeneous nuclear ribonucleoprotein H1	0.979
Srsf7	serine/arginine-rich splicing factor 7	0.964
Srsf1	serine/arginine-rich splicing factor 1	0.960
Sfpq	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	0.889	Human
Luc7l2	LUC7-like 2 (S. cerevisiae)	0.887
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	0.771	Mouse Fly
Hnrnpa1	heterogeneous nuclear ribonucleoprotein A1	0.771
Hnrnpk	heterogeneous nuclear ribonucleoprotein K	0.744
Pnn	pinin	0.680
Srsf2	serine/arginine-rich splicing factor 2	0.646
Srsf6	serine/arginine-rich splicing factor 6	0.606	Human Fly
Hnrnpf	heterogeneous nuclear ribonucleoprotein F	0.542
Hnrnpa3	heterogeneous nuclear ribonucleoprotein A3	0.529	Mouse Fly
Fubp1	far upstream element (FUSE) binding protein 1	0.501	Fly
Sf3b1	splicing factor 3b, subunit 1	0.437
Pabpn1	poly(A) binding protein, nuclear 1	0.385
Prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	0.373
Hnrnpd	heterogeneous nuclear ribonucleoprotein D	0.343	Fly
Rnps1	ribonucleic acid binding protein S1	0.331	Human
Ddx39b	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	0.314	Fly
Srrt	serrate RNA effector molecule homolog (Arabidopsis)	0.296
Srek1	splicing regulatory glutamine/lysine-rich protein 1	0.294	Fly
Hnrnpab	heterogeneous nuclear ribonucleoprotein A/B	0.289	Fly
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	0.287
Srsf3	serine/arginine-rich splicing factor 3	0.284
Tardbp	TAR DNA binding protein	0.278
Rbmxrt	RNA binding motif protein, X chromosome retrogene	0.278	Rat
Ddx5	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	0.267	Human Fly
Dhx9	DEAH (Asp-Glu-Ala-His) box polypeptide 9	0.264
Rbm25	RNA binding motif protein 25	0.246	Human Fly
Srsf11	serine/arginine-rich splicing factor 11	0.237	Fly
Khdrbs1	KH domain containing, RNA binding, signal transduction associated 1	0.218	Fly
Ccnl1	cyclin L1	0.201
Nxf1	nuclear RNA export factor 1 homolog (S. cerevisiae)	0.164
Srsf5	serine/arginine-rich splicing factor 5	0.159	Fly
Magoh	mago-nashi homolog, proliferation-associated (Drosophila)	0.158	Human
Rbm8a	RNA binding motif protein 8a	0.143	Human
Snrnp40	small nuclear ribonucleoprotein 40 (U5)	0.139
Tra2b	transformer 2 beta homolog (Drosophila)	0.139	Human Fly
Ctcf	CCCTC-binding factor	0.109
Arglu1	arginine and glutamate rich 1	0.105
Fus	fusion, derived from t(12;16) malignant liposarcoma (human)	0.104
Safb	scaffold attachment factor B	0.103
Thoc2	THO complex 2	0.097
Nktr	natural killer tumor recognition sequence	0.096
Zc3h11a	zinc finger CCCH type containing 11A	0.093
2500003M10Rik	RIKEN cDNA 2500003M10 gene	0.092
Anp32e	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.090
Sltm	SAFB-like, transcription modulator	0.088	Fly
Syncrip	synaptotagmin binding, cytoplasmic RNA interacting protein	0.087
Hmgb1	high mobility group box 1	0.084
Hcfc1	host cell factor C1	0.083
Sfrs18	serine/arginine-rich splicing factor 18	0.082
Safb2	scaffold attachment factor B2	0.076	Fly
Luc7l3	LUC7-like 3 (S. cerevisiae)	0.075
Hnrnpm	heterogeneous nuclear ribonucleoprotein M	0.072	Human
Raver2	ribonucleoprotein, PTB-binding 2	0.072
Rbm14	RNA binding motif protein 14	0.072	Mouse
Mat2a	methionine adenosyltransferase II, alpha	0.070
Set	SET nuclear oncogene	0.070
Eed	embryonic ectoderm development	0.069
Srrm1	serine/arginine repetitive matrix 1	0.068
Hnrnph3	heterogeneous nuclear ribonucleoprotein H3	0.067
Srsf9	serine/arginine-rich splicing factor 9	0.066
Ddx3x	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	0.065
Acin1	apoptotic chromatin condensation inducer 1	0.064
Ppp4c	protein phosphatase 4, catalytic subunit	0.063
Tia1	cytotoxic granule-associated RNA binding protein 1	0.063	Fly
Zfp445	zinc finger protein 445	0.063
Luc7l	Luc7 homolog (S. cerevisiae)-like	0.062
Akap8	A kinase (PRKA) anchor protein 8	0.062
Thoc4	THO complex 4	0.061
Sf3a3	splicing factor 3a, subunit 3	0.059
Pum1	pumilio 1 (Drosophila)	0.057
Elavl1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	0.056	Worm
Prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast)	0.054
Isg20l2	interferon stimulated exonuclease gene 20-like 2	0.053
H3f3b	H3 histone, family 3B	0.051
Tdg	thymine DNA glycosylase	0.044
Usp7	ubiquitin specific peptidase 7	0.043
Enoph1	enolase-phosphatase 1	0.043
Bclaf1	BCL2-associated transcription factor 1	0.042
Rbm39	RNA binding motif protein 39	0.041	Fly
Son	Son DNA binding protein	0.040
Hnrnpa0	heterogeneous nuclear ribonucleoprotein A0	0.039	Mouse
Fnbp4	formin binding protein 4	0.037
Ppp1r8	protein phosphatase 1, regulatory (inhibitor) subunit 8	0.035
Hnrnpr	heterogeneous nuclear ribonucleoprotein R	0.035
Polr2d	polymerase (RNA) II (DNA directed) polypeptide D	0.035
Mef2a	myocyte enhancer factor 2A	0.033
Taok1	TAO kinase 1	0.033
Kdm1a	lysine (K)-specific demethylase 1A	0.033
Raver1	ribonucleoprotein, PTB-binding 1	0.033
2310036O22Rik	RIKEN cDNA 2310036O22 gene	0.032
Ash1l	ash1 (absent, small, or homeotic)-like (Drosophila)	0.031
U2af1	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	0.031	Fly
Ylpm1	YLP motif containing 1	0.031
Fbxo32	F-box protein 32	0.031
Ccar1	cell division cycle and apoptosis regulator 1	0.030
Exosc10	exosome component 10	0.030
Tra2a	transformer 2 alpha homolog (Drosophila)	0.029	Fly
Sf3a2	splicing factor 3a, subunit 2	0.029
D4Wsu53e	DNA segment, Chr 4, Wayne State University 53, expressed	0.029
Ptma	prothymosin alpha	0.029
Thrap3	thyroid hormone receptor associated protein 3	0.028
Bptf	bromodomain PHD finger transcription factor	0.028
Ewsr1	Ewing sarcoma breakpoint region 1	0.028
Hmgn1	high mobility group nucleosomal binding domain 1	0.027
Qrich1	glutamine-rich 1	0.027
Pitx2	paired-like homeodomain transcription factor 2	0.027
Actl6a	actin-like 6A	0.027
Dhx15	DEAH (Asp-Glu-Ala-His) box polypeptide 15	0.027
Ncoa5	nuclear receptor coactivator 5	0.025
Dazap1	DAZ associated protein 1	0.025
Ogt	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	0.024
Prmt1	protein arginine N-methyltransferase 1	0.024
Fbl	fibrillarin	0.023
Cpsf1	cleavage and polyadenylation specific factor 1	0.023
Snrnp70	small nuclear ribonucleoprotein 70 (U1)	0.023	Fly
Trim28	tripartite motif-containing 28	0.023
Npm1	nucleophosmin 1	0.022
Ttc14	tetratricopeptide repeat domain 14	0.022
Pax7	paired box gene 7	0.022
Ddx21	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	0.022
Zfp871	zinc finger protein 871	0.022
Phip	pleckstrin homology domain interacting protein	0.021
Gabpb1	GA repeat binding protein, beta 1	0.021
Prrc2c	proline-rich coiled-coil 2C	0.021
Zfp326	zinc finger protein 326	0.021
Cul3	cullin 3	0.021
Top1	topoisomerase (DNA) I	0.021
Upf1	UPF1 regulator of nonsense transcripts homolog (yeast)	0.021
Smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.020
2410002F23Rik	RIKEN cDNA 2410002F23 gene	0.020
Rbm10	RNA binding motif protein 10	0.020
Sf1	splicing factor 1	0.020
Ina	internexin neuronal intermediate filament protein, alpha	0.020
Trrap	transformation/transcription domain-associated protein	0.020
Ran	RAN, member RAS oncogene family	0.019
Nup85	nucleoporin 85	0.019
Fbxl3	F-box and leucine-rich repeat protein 3	0.019
1110004F10Rik	RIKEN cDNA 1110004F10 gene	0.019
Myf5	myogenic factor 5	0.018	Mouse
Ythdf2	YTH domain family 2	0.018
Ctdp1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	0.018
Nono	non-POU-domain-containing, octamer binding protein	0.018
U2af2	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	0.017	Fly
Wsb1	WD repeat and SOCS box-containing 1	0.017
Ddx6	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	0.017
Nfyc	nuclear transcription factor-Y gamma	0.017
Kdm2b	lysine (K)-specific demethylase 2B	0.017
Dtymk	deoxythymidylate kinase	0.016
Rsrc2	arginine/serine-rich coiled-coil 2	0.016
Csnk1a1	casein kinase 1, alpha 1	0.016
Eif4g1	eukaryotic translation initiation factor 4, gamma 1	0.016
Lbr	lamin B receptor	0.016
Hspa14	heat shock protein 14	0.016
Uba2	ubiquitin-like modifier activating enzyme 2	0.016
Rtf1	Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.016
Ezh2	enhancer of zeste homolog 2 (Drosophila)	0.016
Ankrd10	ankyrin repeat domain 10	0.016
Prpf38a	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	0.016
Sart3	squamous cell carcinoma antigen recognized by T-cells 3	0.015
Nup93	nucleoporin 93	0.015
Dnmt1	DNA methyltransferase (cytosine-5) 1	0.015
Insm1	insulinoma-associated 1	0.015
Sfswap	splicing factor, suppressor of white-apricot homolog (Drosophila)	0.015
Mll5	myeloid/lymphoid or mixed-lineage leukemia 5	0.015
Rbm3	RNA binding motif protein 3	0.015
Cdca4	cell division cycle associated 4	0.014
Arid1a	AT rich interactive domain 1A (SWI-like)	0.014
Cpsf7	cleavage and polyadenylation specific factor 7	0.014	Fly
Gar1	GAR1 ribonucleoprotein homolog (yeast)	0.013
Phf5a	PHD finger protein 5A	0.013
Bzw1	basic leucine zipper and W2 domains 1	0.013
Srsf4	serine/arginine-rich splicing factor 4	0.013	Fly
Pcbp1	poly(rC) binding protein 1	0.013
Myf6	myogenic factor 6	0.013	Mouse
Cdk11b	cyclin-dependent kinase 11B	0.013
Spag7	sperm associated antigen 7	0.013
Ivns1abp	influenza virus NS1A binding protein	0.013
Lbx1	ladybird homeobox homolog 1 (Drosophila)	0.013
Ctbp1	C-terminal binding protein 1	0.013
Nhp2l1	NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	0.013
Pom121	nuclear pore membrane protein 121	0.012
Cxxc1	CXXC finger 1 (PHD domain)	0.012
Scaf4	SR-related CTD-associated factor 4	0.012
Lmnb1	lamin B1	0.012
Dmap1	DNA methyltransferase 1-associated protein 1	0.012
Mtf2	metal response element binding transcription factor 2	0.012
Hmgb2	high mobility group box 2	0.012
Zfp207	zinc finger protein 207	0.012
Hars	histidyl-tRNA synthetase	0.012
Six1	sine oculis-related homeobox 1 homolog (Drosophila)	0.012
Snrpf	small nuclear ribonucleoprotein polypeptide F	0.012
Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	0.012
Eif3a	eukaryotic translation initiation factor 3, subunit A	0.011
Ssrp1	structure specific recognition protein 1	0.011
Nanog	Nanog homeobox	0.011
Sf3b3	splicing factor 3b, subunit 3	0.011
Tcerg1	transcription elongation regulator 1 (CA150)	0.011
Ppp1r12a	protein phosphatase 1, regulatory (inhibitor) subunit 12A	0.011
Ptbp2	polypyrimidine tract binding protein 2	0.011
Tcf4	transcription factor 4	0.011
Pafah1b2	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	0.011
Erh	enhancer of rudimentary homolog (Drosophila)	0.011
Elavl4	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	0.011	Worm
Brd4	bromodomain containing 4	0.011
Cherp	calcium homeostasis endoplasmic reticulum protein	0.011
Sept3	septin 3	0.011
Clk4	CDC like kinase 4	0.011
Stag1	stromal antigen 1	0.010
Smu1	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	0.010	Worm
Zbed6	zinc finger, BED domain containing 6	0.010
Elavl2	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	0.010	Worm
Ptges3	prostaglandin E synthase 3 (cytosolic)	0.010
Rbbp6	retinoblastoma binding protein 6	0.010
Cnbp	cellular nucleic acid binding protein	0.010
Brd3	bromodomain containing 3	0.010
Scg3	secretogranin III	0.010