IMP: Integrative Multi-species Prediction

Mus musculus

2 genes annotated in mouse

Multi-species View

trna wobble base modification

GO:0002097

The process in which the nucleotide at position 34 in the anticodon of a tRNA is post-transcriptionally modified.

Loading network...

In addition to gene-name show these genes:

Known genes in the process in mouseInclude functional analogs

Network Filters

Minimum relationship confidence:

Maximum number of genes:

Highlight known relationships in gold.

Graphical Options

Adjust edge length:

Adjust node size:

Fixed layout

Black background

Low confidence color:

Med confidence color:

High confidence color:

Hide the legend in the network

Save Options

Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "trna wobble base modification"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "trna wobble base modification" (in gray)

Name	Description	Probability	Func Analog Organism
Sox4	SRY-box containing gene 4	0.299
Per1	period homolog 1 (Drosophila)	0.263
Impad1	inositol monophosphatase domain containing 1	0.247
Prpf6	PRP6 pre-mRNA splicing factor 6 homolog (yeast)	0.241
Asna1	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	0.237
Tab2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	0.193
Hnrnpk	heterogeneous nuclear ribonucleoprotein K	0.167
Cpsf3	cleavage and polyadenylation specificity factor 3	0.164
Ddx56	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	0.148
Snap47	synaptosomal-associated protein, 47	0.139
Imp4	IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.137
Pum1	pumilio 1 (Drosophila)	0.126
Parn	poly(A)-specific ribonuclease (deadenylation nuclease)	0.121
Eftud2	elongation factor Tu GTP binding domain containing 2	0.119
Fbxw11	F-box and WD-40 domain protein 11	0.119
Elp3	elongation protein 3 homolog (S. cerevisiae)	0.115	Yeast
Atpaf2	ATP synthase mitochondrial F1 complex assembly factor 2	0.098
Anapc4	anaphase promoting complex subunit 4	0.096
Zfp322a	zinc finger protein 322A	0.091
Mlh1	mutL homolog 1 (E. coli)	0.085
Ddx41	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	0.080
Sox11	SRY-box containing gene 11	0.075
Nono	non-POU-domain-containing, octamer binding protein	0.071
Ube2g1	ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	0.068
Anapc2	anaphase promoting complex subunit 2	0.068
Commd4	COMM domain containing 4	0.068
Sf3b3	splicing factor 3b, subunit 3	0.066
2610027L16Rik	RIKEN cDNA 2610027L16 gene	0.062
Ppp2ca	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	0.061
Psmc4	proteasome (prosome, macropain) 26S subunit, ATPase, 4	0.061
Dhx30	DEAH (Asp-Glu-Ala-His) box polypeptide 30	0.059
Drg1	developmentally regulated GTP binding protein 1	0.058
Dus1l	dihydrouridine synthase 1-like (S. cerevisiae)	0.058
Dda1	DET1 and DDB1 associated 1	0.050
Mlx	MAX-like protein X	0.049
Nudt16l1	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	0.049
Dlgap4	discs, large homolog-associated protein 4 (Drosophila)	0.048
Ercc3	excision repair cross-complementing rodent repair deficiency, complementation group 3	0.045
Lsg1	large subunit GTPase 1 homolog (S. cerevisiae)	0.045
Nubp2	nucleotide binding protein 2	0.044	Yeast
Cops2	COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	0.044
Glg1	golgi apparatus protein 1	0.042
Mrps23	mitochondrial ribosomal protein S23	0.042
C80913	expressed sequence C80913	0.041
Tbrg1	transforming growth factor beta regulated gene 1	0.041
Plrg1	pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	0.041
Ppp1cb	protein phosphatase 1, catalytic subunit, beta isoform	0.039
Vps25	vacuolar protein sorting 25 (yeast)	0.039
Lrrc59	leucine rich repeat containing 59	0.039
Polr3a	polymerase (RNA) III (DNA directed) polypeptide A	0.039
Lars	leucyl-tRNA synthetase	0.038
Mapre1	microtubule-associated protein, RP/EB family, member 1	0.038
Dctn3	dynactin 3	0.038
Eif6	eukaryotic translation initiation factor 6	0.037
Strn3	striatin, calmodulin binding protein 3	0.033
Qars	glutaminyl-tRNA synthetase	0.032
Noc4l	nucleolar complex associated 4 homolog (S. cerevisiae)	0.031
Srm	spermidine synthase	0.031
Zfp740	zinc finger protein 740	0.030
2400003C14Rik	RIKEN cDNA 2400003C14 gene	0.030
Spin1	spindlin 1	0.029
Gsk3b	glycogen synthase kinase 3 beta	0.029
Ppp4c	protein phosphatase 4, catalytic subunit	0.029
Med20	mediator complex subunit 20	0.028
Fam192a	family with sequence similarity 192, member A	0.028
Prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast)	0.028
Mrps18b	mitochondrial ribosomal protein S18B	0.028
Hnrnpr	heterogeneous nuclear ribonucleoprotein R	0.028
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	0.027
Arntl	aryl hydrocarbon receptor nuclear translocator-like	0.027
Parg	poly (ADP-ribose) glycohydrolase	0.026
Polr3c	polymerase (RNA) III (DNA directed) polypeptide C	0.026
Maf1	MAF1 homolog (S. cerevisiae)	0.026
Rcc2	regulator of chromosome condensation 2	0.025
Ecd	ecdysoneless homolog (Drosophila)	0.025
Ttc3	tetratricopeptide repeat domain 3	0.025
Ssr2	signal sequence receptor, beta	0.025
Elp2	elongation protein 2 homolog (S. cerevisiae)	0.025	Yeast
Kif5b	kinesin family member 5B	0.024
2410001C21Rik	RIKEN cDNA 2410001C21 gene	0.024
Apex1	apurinic/apyrimidinic endonuclease 1	0.024
Capza2	capping protein (actin filament) muscle Z-line, alpha 2	0.023
Rnf167	ring finger protein 167	0.023
Trap1	TNF receptor-associated protein 1	0.023
Zfand5	zinc finger, AN1-type domain 5	0.022
Drg2	developmentally regulated GTP binding protein 2	0.022
G3bp2	GTPase activating protein (SH3 domain) binding protein 2	0.022
Dync1i2	dynein cytoplasmic 1 intermediate chain 2	0.022
Wdr6	WD repeat domain 6	0.022
March7	membrane-associated ring finger (C3HC4) 7	0.022
Klf7	Kruppel-like factor 7 (ubiquitous)	0.021
Ntf3	neurotrophin 3	0.021
Bap1	Brca1 associated protein 1	0.021
Galnt2	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	0.021
Poglut1	protein O-glucosyltransferase 1	0.021
Mtx1	metaxin 1	0.021
Ppp1r7	protein phosphatase 1, regulatory (inhibitor) subunit 7	0.021
Trp53bp1	transformation related protein 53 binding protein 1	0.020
Rrp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	0.020
Wbscr22	Williams Beuren syndrome chromosome region 22	0.019
Pafah1b2	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	0.019
Brd4	bromodomain containing 4	0.019
Gins4	GINS complex subunit 4 (Sld5 homolog)	0.019
Bptf	bromodomain PHD finger transcription factor	0.019
Wac	WW domain containing adaptor with coiled-coil	0.019
Rnf8	ring finger protein 8	0.019
Ints3	integrator complex subunit 3	0.019
Lsm4	LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)	0.019
Psmd8	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	0.018
Exosc7	exosome component 7	0.018
Vapa	vesicle-associated membrane protein, associated protein A	0.018
Tnks2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	0.018
Smyd5	SET and MYND domain containing 5	0.018
Pitpnb	phosphatidylinositol transfer protein, beta	0.018
Xpo5	exportin 5	0.018
Ctnnbl1	catenin, beta like 1	0.018
Midn	midnolin	0.018
Ppp2r1a	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	0.017
Cul2	cullin 2	0.017
2310011J03Rik	RIKEN cDNA 2310011J03 gene	0.017
Dpagt1	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	0.017
Ube2i	ubiquitin-conjugating enzyme E2I	0.017
Pqbp1	polyglutamine binding protein 1	0.017
Ints4	integrator complex subunit 4	0.017
Reps1	RalBP1 associated Eps domain containing protein	0.016
Alg3	asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)	0.016
Wdr74	WD repeat domain 74	0.016
Tada2a	transcriptional adaptor 2A	0.016
Ngrn	neugrin, neurite outgrowth associated	0.016
Arfrp1	ADP-ribosylation factor related protein 1	0.016
Map4k4	mitogen-activated protein kinase kinase kinase kinase 4	0.016
Dicer1	Dicer1, Dcr-1 homolog (Drosophila)	0.016
Ctnnb1	catenin (cadherin associated protein), beta 1	0.015
Mapkapk2	MAP kinase-activated protein kinase 2	0.015
Cd2bp2	CD2 antigen (cytoplasmic tail) binding protein 2	0.015
D10Wsu52e	DNA segment, Chr 10, Wayne State University 52, expressed	0.015
Grwd1	glutamate-rich WD repeat containing 1	0.015
Npat	nuclear protein in the AT region	0.015
Ppp3r1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	0.015
Triap1	TP53 regulated inhibitor of apoptosis 1	0.015
Add1	adducin 1 (alpha)	0.015
Usp22	ubiquitin specific peptidase 22	0.015
Cand1	cullin associated and neddylation disassociated 1	0.015
Rtn4	reticulon 4	0.015
Psmd5	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	0.015
Jun	Jun oncogene	0.015
Kpna1	karyopherin (importin) alpha 1	0.014
Ttc4	tetratricopeptide repeat domain 4	0.014
Rbm18	RNA binding motif protein 18	0.014
Cdk9	cyclin-dependent kinase 9 (CDC2-related kinase)	0.014
Rab10	RAB10, member RAS oncogene family	0.014
Pms2	postmeiotic segregation increased 2 (S. cerevisiae)	0.014
Lsm14a	LSM14 homolog A (SCD6, S. cerevisiae)	0.014
Stx18	syntaxin 18	0.014
Srp68	signal recognition particle 68	0.014
Tbcd	tubulin-specific chaperone d	0.014
Pik3r4	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 4, p150	0.014
Tdp1	tyrosyl-DNA phosphodiesterase 1	0.014
Anapc1	anaphase promoting complex subunit 1	0.013
Orc5	origin recognition complex, subunit 5	0.013
Fbxo25	F-box protein 25	0.013
Dnajc5	DnaJ (Hsp40) homolog, subfamily C, member 5	0.013
Mrps27	mitochondrial ribosomal protein S27	0.013
Ptcd2	pentatricopeptide repeat domain 2	0.013
Gtf2h4	general transcription factor II H, polypeptide 4	0.013
Eif2b2	eukaryotic translation initiation factor 2B, subunit 2 beta	0.013
Hnrnpd	heterogeneous nuclear ribonucleoprotein D	0.013
Ptp4a1	protein tyrosine phosphatase 4a1	0.013
Ubap1	ubiquitin-associated protein 1	0.013
Th1l	TH1-like homolog (Drosophila)	0.013
Gosr2	golgi SNAP receptor complex member 2	0.013
Thoc3	THO complex 3	0.012
Cstf2t	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	0.012
Sdhaf2	succinate dehydrogenase complex assembly factor 2	0.012
Ykt6	YKT6 homolog (S. Cerevisiae)	0.012
Ywhae	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	0.012
Pnkp	polynucleotide kinase 3'- phosphatase	0.012
Map2k4	mitogen-activated protein kinase kinase 4	0.012
Tsn	translin	0.012
Mapk1	mitogen-activated protein kinase 1	0.012
Sec13	SEC13 homolog (S. cerevisiae)	0.012
Mbtps1	membrane-bound transcription factor peptidase, site 1	0.012
Rab24	RAB24, member RAS oncogene family	0.012
Cdc16	CDC16 cell division cycle 16 homolog (S. cerevisiae)	0.012
Per2	period homolog 2 (Drosophila)	0.012
Pot1a	protection of telomeres 1A	0.012
Mat2a	methionine adenosyltransferase II, alpha	0.012
Zc3h13	zinc finger CCCH type containing 13	0.012
Camk2g	calcium/calmodulin-dependent protein kinase II gamma	0.012
Prep	prolyl endopeptidase	0.012
Rac1	RAS-related C3 botulinum substrate 1	0.012
Vps16	vacuolar protein sorting 16 (yeast)	0.012
Snx17	sorting nexin 17	0.012
Smad4	MAD homolog 4 (Drosophila)	0.012
Stx6	syntaxin 6	0.012
Gpr89	G protein-coupled receptor 89	0.012
Polr2b	polymerase (RNA) II (DNA directed) polypeptide B	0.012
Tmem199	transmembrane protein 199	0.012
Nfx1	nuclear transcription factor, X-box binding 1	0.011
1200011I18Rik	RIKEN cDNA 1200011I18 gene	0.011
Copz1	coatomer protein complex, subunit zeta 1	0.011
Dvl2	dishevelled 2, dsh homolog (Drosophila)	0.011
Zscan21	zinc finger and SCAN domain containing 21	0.011
Commd7	COMM domain containing 7	0.011
Ufd1l	ubiquitin fusion degradation 1 like	0.011
Rnf34	ring finger protein 34	0.011
Ddx39b	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	0.011
Zc3hc1	zinc finger, C3HC type 1	0.011
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	0.011
Pgd	phosphogluconate dehydrogenase	0.011
Eif2s3x	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	0.011
Tcf12	transcription factor 12	0.011
Trit1	tRNA isopentenyltransferase 1	0.011
Ankrd46	ankyrin repeat domain 46	0.011
Rpp14	ribonuclease P 14 subunit (human)	0.011
Usp39	ubiquitin specific peptidase 39	0.011
Sugp1	SURP and G patch domain containing 1	0.011
Mrpl37	mitochondrial ribosomal protein L37	0.011
Cndp2	CNDP dipeptidase 2 (metallopeptidase M20 family)	0.011
Cirh1a	cirrhosis, autosomal recessive 1A (human)	0.011
Prpsap1	phosphoribosyl pyrophosphate synthetase-associated protein 1	0.011
Chmp7	CHMP family, member 7	0.011
Rhob	ras homolog gene family, member B	0.011
Chd4	chromodomain helicase DNA binding protein 4	0.011
Rbmx	RNA binding motif protein, X chromosome	0.011
Maea	macrophage erythroblast attacher	0.011
Smarcc1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	0.011
Trmt6	tRNA methyltransferase 6 homolog (S. cerevisiae)	0.011
Hp1bp3	heterochromatin protein 1, binding protein 3	0.011
Slc12a2	solute carrier family 12, member 2	0.011
Ppp3cb	protein phosphatase 3, catalytic subunit, beta isoform	0.010
Ghitm	growth hormone inducible transmembrane protein	0.010
Xab2	XPA binding protein 2	0.010
Ubr7	ubiquitin protein ligase E3 component n-recognin 7 (putative)	0.010
Terf2	telomeric repeat binding factor 2	0.010
Ppp1ca	protein phosphatase 1, catalytic subunit, alpha isoform	0.010
Utp15	UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.010
Nemf	nuclear export mediator factor	0.010
Prkar1a	protein kinase, cAMP dependent regulatory, type I, alpha	0.010
Dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36	0.010
Clp1	CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)	0.010
Ak2	adenylate kinase 2	0.010
Zmym4	zinc finger, MYM-type 4	0.010
Gpatch1	G patch domain containing 1	0.010
Ptp4a2	protein tyrosine phosphatase 4a2	0.010
Wdr73	WD repeat domain 73	0.010
H2afy	H2A histone family, member Y	0.010
Ttc13	tetratricopeptide repeat domain 13	0.010
Qk	quaking	0.010