IMP: Integrative Multi-species Prediction

Mus musculus

2 genes annotated in mouse

Multi-species View

trna wobble uridine modification

GO:0002098

The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.

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Known genes in the process in mouseInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "trna wobble uridine modification"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "trna wobble uridine modification" (in gray)

Name	Description	Probability	Func Analog Organism
Mrps18b	mitochondrial ribosomal protein S18B	0.514
Ddx41	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	0.292
Eftud2	elongation factor Tu GTP binding domain containing 2	0.183
Vps25	vacuolar protein sorting 25 (yeast)	0.167
Per1	period homolog 1 (Drosophila)	0.150
Ddx56	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	0.145
Nono	non-POU-domain-containing, octamer binding protein	0.137
Noc4l	nucleolar complex associated 4 homolog (S. cerevisiae)	0.136
Drg1	developmentally regulated GTP binding protein 1	0.127
Anapc2	anaphase promoting complex subunit 2	0.117
Sox4	SRY-box containing gene 4	0.095
Cpsf3	cleavage and polyadenylation specificity factor 3	0.091
Nudt16l1	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	0.090
Prpf6	PRP6 pre-mRNA splicing factor 6 homolog (yeast)	0.085
Ube2g1	ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	0.082
Parn	poly(A)-specific ribonuclease (deadenylation nuclease)	0.076
Zfp740	zinc finger protein 740	0.070
Asna1	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	0.067
Mrps23	mitochondrial ribosomal protein S23	0.065
Dus1l	dihydrouridine synthase 1-like (S. cerevisiae)	0.064
Glg1	golgi apparatus protein 1	0.063
Jagn1	jagunal homolog 1 (Drosophila)	0.057
Anapc4	anaphase promoting complex subunit 4	0.056
Rrp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	0.052
Ppp1r7	protein phosphatase 1, regulatory (inhibitor) subunit 7	0.050
0610010K14Rik	RIKEN cDNA 0610010K14 gene	0.048
Ppp1ca	protein phosphatase 1, catalytic subunit, alpha isoform	0.048
Wdr74	WD repeat domain 74	0.047
Ywhae	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	0.046
Impad1	inositol monophosphatase domain containing 1	0.046
Pnkp	polynucleotide kinase 3'- phosphatase	0.045
Hnrnpr	heterogeneous nuclear ribonucleoprotein R	0.045
Drg2	developmentally regulated GTP binding protein 2	0.044
Snap47	synaptosomal-associated protein, 47	0.044
Hif1a	hypoxia inducible factor 1, alpha subunit	0.044
Sec13	SEC13 homolog (S. cerevisiae)	0.044
Dhx30	DEAH (Asp-Glu-Ala-His) box polypeptide 30	0.043
2610027L16Rik	RIKEN cDNA 2610027L16 gene	0.043
Pafah1b2	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	0.042
Ppp2ca	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	0.042
Cdk4	cyclin-dependent kinase 4	0.041
Atpaf2	ATP synthase mitochondrial F1 complex assembly factor 2	0.041
Parl	presenilin associated, rhomboid-like	0.039
Vps16	vacuolar protein sorting 16 (yeast)	0.037
Psmd4	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	0.037
Ssr2	signal sequence receptor, beta	0.037
Elp2	elongation protein 2 homolog (S. cerevisiae)	0.037	Yeast
Commd4	COMM domain containing 4	0.037
Elp3	elongation protein 3 homolog (S. cerevisiae)	0.036	Yeast
Mrpl37	mitochondrial ribosomal protein L37	0.036
Psmc4	proteasome (prosome, macropain) 26S subunit, ATPase, 4	0.035
Psmd8	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	0.035
Vars	valyl-tRNA synthetase	0.034
Fbxw11	F-box and WD-40 domain protein 11	0.034
D10Wsu52e	DNA segment, Chr 10, Wayne State University 52, expressed	0.031
Eif6	eukaryotic translation initiation factor 6	0.030
Lsg1	large subunit GTPase 1 homolog (S. cerevisiae)	0.030
Ercc3	excision repair cross-complementing rodent repair deficiency, complementation group 3	0.029
Triap1	TP53 regulated inhibitor of apoptosis 1	0.029
Zranb2	zinc finger, RAN-binding domain containing 2	0.029
Imp4	IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.029
Th1l	TH1-like homolog (Drosophila)	0.028
Usp22	ubiquitin specific peptidase 22	0.028
Ttc3	tetratricopeptide repeat domain 3	0.028
Pin1	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	0.026
Gart	phosphoribosylglycinamide formyltransferase	0.026
Gsk3b	glycogen synthase kinase 3 beta	0.026
Gtf2h4	general transcription factor II H, polypeptide 4	0.026
Fam192a	family with sequence similarity 192, member A	0.026
2410001C21Rik	RIKEN cDNA 2410001C21 gene	0.026
Ppp4c	protein phosphatase 4, catalytic subunit	0.026
Apex1	apurinic/apyrimidinic endonuclease 1	0.025
Brd4	bromodomain containing 4	0.025
Ctnnbl1	catenin, beta like 1	0.024
Sox11	SRY-box containing gene 11	0.024
Prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast)	0.024
Mcm3ap	minichromosome maintenance deficient 3 (S. cerevisiae) associated protein	0.024
Cdc37	cell division cycle 37 homolog (S. cerevisiae)	0.024
Ddx39b	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	0.024
Mlh1	mutL homolog 1 (E. coli)	0.023
Arpc4	actin related protein 2/3 complex, subunit 4	0.023
Gins4	GINS complex subunit 4 (Sld5 homolog)	0.023
Eif3b	eukaryotic translation initiation factor 3, subunit B	0.023
Ptcd2	pentatricopeptide repeat domain 2	0.023
Pqbp1	polyglutamine binding protein 1	0.022
Lrrc59	leucine rich repeat containing 59	0.022
Psmd13	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	0.022
Sept7	septin 7	0.022
Hnrnpk	heterogeneous nuclear ribonucleoprotein K	0.021
Ptp4a2	protein tyrosine phosphatase 4a2	0.021
Actr3	ARP3 actin-related protein 3 homolog (yeast)	0.021
Polr3a	polymerase (RNA) III (DNA directed) polypeptide A	0.021
Eif2b1	eukaryotic translation initiation factor 2B, subunit 1 (alpha)	0.021
C80913	expressed sequence C80913	0.021
Thoc3	THO complex 3	0.021
Ngrn	neugrin, neurite outgrowth associated	0.020
Stx6	syntaxin 6	0.020
2310011J03Rik	RIKEN cDNA 2310011J03 gene	0.020
Spag7	sperm associated antigen 7	0.020
Lsm4	LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)	0.020
2400003C14Rik	RIKEN cDNA 2400003C14 gene	0.020
Qars	glutaminyl-tRNA synthetase	0.019
Galnt2	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	0.019
Mrps27	mitochondrial ribosomal protein S27	0.019
Ppp2r1a	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	0.019
Rab24	RAB24, member RAS oncogene family	0.019
Exosc5	exosome component 5	0.019
Nans	N-acetylneuraminic acid synthase (sialic acid synthase)	0.019
Trim28	tripartite motif-containing 28	0.019
Pum1	pumilio 1 (Drosophila)	0.019
Thoc5	THO complex 5	0.019
Polr3c	polymerase (RNA) III (DNA directed) polypeptide C	0.019
Sf3b3	splicing factor 3b, subunit 3	0.019
Polr2b	polymerase (RNA) II (DNA directed) polypeptide B	0.018
Klf7	Kruppel-like factor 7 (ubiquitous)	0.018
Mlx	MAX-like protein X	0.018
Urod	uroporphyrinogen decarboxylase	0.018
Poglut1	protein O-glucosyltransferase 1	0.018
Prpsap1	phosphoribosyl pyrophosphate synthetase-associated protein 1	0.017
Rnf8	ring finger protein 8	0.017
Smyd5	SET and MYND domain containing 5	0.017
Psmb2	proteasome (prosome, macropain) subunit, beta type 2	0.017
Exosc7	exosome component 7	0.017
Orc5	origin recognition complex, subunit 5	0.017
Ssna1	Sjogren's syndrome nuclear autoantigen 1	0.017
Bap1	Brca1 associated protein 1	0.017
Eif2b2	eukaryotic translation initiation factor 2B, subunit 2 beta	0.016
Med20	mediator complex subunit 20	0.016
Stoml2	stomatin (Epb7.2)-like 2	0.016
Mrps7	mitchondrial ribosomal protein S7	0.016
Rab5a	RAB5A, member RAS oncogene family	0.016
Wdr83	WD repeat domain containing 83	0.016
Dctn3	dynactin 3	0.016
Cdk9	cyclin-dependent kinase 9 (CDC2-related kinase)	0.016
Ints3	integrator complex subunit 3	0.016
Ube2i	ubiquitin-conjugating enzyme E2I	0.016
Thoc2	THO complex 2	0.016
Smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.016
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	0.016
Zfand5	zinc finger, AN1-type domain 5	0.015
Sae1	SUMO1 activating enzyme subunit 1	0.015
Nubp2	nucleotide binding protein 2	0.015	Yeast
Rai12	retinoic acid induced 12	0.015
Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	0.015
Dda1	DET1 and DDB1 associated 1	0.015
Ykt6	YKT6 homolog (S. Cerevisiae)	0.015
1110004F10Rik	RIKEN cDNA 1110004F10 gene	0.015
Dmap1	DNA methyltransferase 1-associated protein 1	0.015
Dhps	deoxyhypusine synthase	0.014
Prpf8	pre-mRNA processing factor 8	0.014
Nprl2	nitrogen permease regulator-like 2 (S. cerevisiae)	0.014
Eif2b5	eukaryotic translation initiation factor 2B, subunit 5 epsilon	0.014
Ikbkap	inhibitor of kappa light polypeptide enhancer in B-cells, kinase complex-associated protein	0.014	Worm
Copg	coatomer protein complex, subunit gamma	0.014
Eefsec	eukaryotic elongation factor, selenocysteine-tRNA-specific	0.014
Cand1	cullin associated and neddylation disassociated 1	0.014
Sdhaf2	succinate dehydrogenase complex assembly factor 2	0.014
Mpdu1	mannose-P-dolichol utilization defect 1	0.014
Rcc2	regulator of chromosome condensation 2	0.014
Tbcd	tubulin-specific chaperone d	0.014
Uqcrc1	ubiquinol-cytochrome c reductase core protein 1	0.013
Eif3d	eukaryotic translation initiation factor 3, subunit D	0.013
Mrpl49	mitochondrial ribosomal protein L49	0.013
Srm	spermidine synthase	0.013
Srp68	signal recognition particle 68	0.013
Psmg1	proteasome (prosome, macropain) assembly chaperone 1	0.013
Cd2bp2	CD2 antigen (cytoplasmic tail) binding protein 2	0.013
Plrg1	pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	0.013
Dbnl	drebrin-like	0.013
Cops6	COP9 (constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana)	0.013
Tada2a	transcriptional adaptor 2A	0.013
Exosc4	exosome component 4	0.013
Ankrd17	ankyrin repeat domain 17	0.013
Ldb1	LIM domain binding 1	0.013
Bax	BCL2-associated X protein	0.013
Arfrp1	ADP-ribosylation factor related protein 1	0.013
Hnrnpd	heterogeneous nuclear ribonucleoprotein D	0.013
Dicer1	Dicer1, Dcr-1 homolog (Drosophila)	0.013
Copz1	coatomer protein complex, subunit zeta 1	0.013
5430437P03Rik	RIKEN cDNA 5430437P03 gene	0.013
Slc25a11	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	0.013
Mrpl9	mitochondrial ribosomal protein L9	0.012
Lias	lipoic acid synthetase	0.012
Bcap31	B-cell receptor-associated protein 31	0.012
Reps1	RalBP1 associated Eps domain containing protein	0.012
Pitpnb	phosphatidylinositol transfer protein, beta	0.012
Tdrd7	tudor domain containing 7	0.012
Mybbp1a	MYB binding protein (P160) 1a	0.012
Grwd1	glutamate-rich WD repeat containing 1	0.012
Tab2	TGF-beta activated kinase 1/MAP3K7 binding protein 2	0.012
Psmd5	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	0.012
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	0.012
Elac2	elaC homolog 2 (E. coli)	0.012
Rrp36	ribosomal RNA processing 36 homolog (S. cerevisiae)	0.012
Dvl2	dishevelled 2, dsh homolog (Drosophila)	0.012
Rnf167	ring finger protein 167	0.012
Ints4	integrator complex subunit 4	0.012
Rnaseh2a	ribonuclease H2, large subunit	0.012
Acin1	apoptotic chromatin condensation inducer 1	0.012
Banf1	barrier to autointegration factor 1	0.012
Cul2	cullin 2	0.012
Appl1	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	0.012
Sars	seryl-aminoacyl-tRNA synthetase	0.012
Ctnnb1	catenin (cadherin associated protein), beta 1	0.012
Sigmar1	sigma non-opioid intracellular receptor 1	0.012
G3bp2	GTPase activating protein (SH3 domain) binding protein 2	0.012
Rps3	ribosomal protein S3	0.012
Smarcb1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	0.012
Mrpl10	mitochondrial ribosomal protein L10	0.012
Wdr6	WD repeat domain 6	0.012
Ovca2	candidate tumor suppressor in ovarian cancer 2	0.012
Dap3	death associated protein 3	0.012
Ttc4	tetratricopeptide repeat domain 4	0.012
Atxn10	ataxin 10	0.011
Prep	prolyl endopeptidase	0.011
Ecd	ecdysoneless homolog (Drosophila)	0.011
Gpn3	GPN-loop GTPase 3	0.011
Ppm1g	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	0.011
Tmem93	transmembrane protein 93	0.011
Tsn	translin	0.011
Zc3hc1	zinc finger, C3HC type 1	0.011
Ssrp1	structure specific recognition protein 1	0.011
Trp53bp1	transformation related protein 53 binding protein 1	0.011
Gtf2f1	general transcription factor IIF, polypeptide 1	0.011
Smarcc1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	0.011
Blmh	bleomycin hydrolase	0.011
Mtx1	metaxin 1	0.011
Ankrd46	ankyrin repeat domain 46	0.011
Zfp644	zinc finger protein 644	0.011
Akt1	thymoma viral proto-oncogene 1	0.011
Mbtps1	membrane-bound transcription factor peptidase, site 1	0.011
Trappc5	trafficking protein particle complex 5	0.011
Glod4	glyoxalase domain containing 4	0.011
Map4k4	mitogen-activated protein kinase kinase kinase kinase 4	0.011
Mapre1	microtubule-associated protein, RP/EB family, member 1	0.010
Tmem208	transmembrane protein 208	0.010
Yars	tyrosyl-tRNA synthetase	0.010
Maged1	melanoma antigen, family D, 1	0.010
Alg3	asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)	0.010
Mapk1	mitogen-activated protein kinase 1	0.010
Arf1	ADP-ribosylation factor 1	0.010
Tubg1	tubulin, gamma 1	0.010
Ints9	integrator complex subunit 9	0.010
Dpagt1	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	0.010
Zfp362	zinc finger protein 362	0.010
Dgcr2	DiGeorge syndrome critical region gene 2	0.010