IMP
Process View
chromatin assembly
The assembly of DNA, histone proteins, other associated proteins, and sometimes RNA, into chromatin structure, beginning with the formation of the basic unit, the nucleosome, followed by organization of the nucleosomes into higher order structures, ultimately giving rise to a complex organization of specific domains within the nucleus.
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In addition to gene-name show these genes:
Click on a gene's description to view its network relationships with genes known to be involved in "chromatin assembly"
| Name | Description | Probability | Func Analog Organism | |
|---|---|---|---|---|
| H3f3a | H3 histone, family 3A | 0.998 | Human | |
| Ezh2 | enhancer of zeste homolog 2 (Drosophila) | 0.994 | ||
| Smarcc1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 | 0.983 | ||
| Smarca5 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 | 0.936 | Human Yeast Fly | |
| Hist1h3g | histone cluster 1, H3g | 0.882 | ||
| Smc1a | structural maintenance of chromosomes 1A | 0.859 | ||
| H2afz | H2A histone family, member Z | 0.763 | ||
| Cbx1 | chromobox homolog 1 (Drosophila HP1 beta) | 0.710 | Fly | |
| Arid1a | AT rich interactive domain 1A (SWI-like) | 0.696 | ||
| Suz12 | suppressor of zeste 12 homolog (Drosophila) | 0.684 | ||
| Rbbp4 | retinoblastoma binding protein 4 | 0.667 | Yeast Fly | |
| Hist1h2bc | histone cluster 1, H2bc | 0.661 | Mouse | |
| Arid1b | AT rich interactive domain 1B (SWI-like) | 0.638 | ||
| Trp53 | transformation related protein 53 | 0.628 | Human | |
| Chaf1a | chromatin assembly factor 1, subunit A (p150) | 0.585 | Human | |
| Trim28 | tripartite motif-containing 28 | 0.535 | ||
| Dnmt3a | DNA methyltransferase 3A | 0.434 | ||
| Uhrf1 | ubiquitin-like, containing PHD and RING finger domains, 1 | 0.401 | ||
| Cbx5 | chromobox homolog 5 (Drosophila HP1a) | 0.371 | Fly | |
| Pou5f1 | POU domain, class 5, transcription factor 1 | 0.325 | ||
| Smarca4 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 | 0.320 | Yeast | |
| Dek | DEK oncogene (DNA binding) | 0.284 | ||
| Hist1h2bm | histone cluster 1, H2bm | 0.233 | Mouse | |
| Hist1h1b | histone cluster 1, H1b | 0.228 | ||
| Hist1h1c | histone cluster 1, H1c | 0.223 | ||
| Tnrc6b | trinucleotide repeat containing 6b | 0.182 | ||
| Baz1b | bromodomain adjacent to zinc finger domain, 1B | 0.176 | ||
| Dnajc9 | DnaJ (Hsp40) homolog, subfamily C, member 9 | 0.160 | ||
| Mdm2 | transformed mouse 3T3 cell double minute 2 | 0.153 | ||
| Trim24 | tripartite motif-containing 24 | 0.148 | ||
| Hist1h4m | histone cluster 1, H4m | 0.144 | ||
| Hist2h3c1 | histone cluster 2, H3c1 | 0.142 | ||
| Mecp2 | methyl CpG binding protein 2 | 0.136 | ||
| Anp32e | acidic (leucine-rich) nuclear phosphoprotein 32 family, member E | 0.120 | ||
| Mcm4 | minichromosome maintenance deficient 4 homolog (S. cerevisiae) | 0.110 | ||
| Cdt1 | chromatin licensing and DNA replication factor 1 | 0.107 | ||
| Hist1h2br | histone cluster 1 H2br | 0.104 | ||
| Nap1l2 | nucleosome assembly protein 1-like 2 | 0.078 | ||
| Dnmt1 | DNA methyltransferase (cytosine-5) 1 | 0.077 | ||
| Hmgb1 | high mobility group box 1 | 0.076 | ||
| Hist1h2aa | histone cluster 1, H2aa | 0.076 | ||
| Mtf2 | metal response element binding transcription factor 2 | 0.075 | ||
| Rnf2 | ring finger protein 2 | 0.075 | ||
| Nono | non-POU-domain-containing, octamer binding protein | 0.073 | ||
| Brd4 | bromodomain containing 4 | 0.072 | ||
| Hist1h2bp | histone cluster 1, H2bp | 0.071 | Mouse | |
| Smarcd1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 | 0.070 | Fly | |
| Hdac1 | histone deacetylase 1 | 0.067 | ||
| Chd4 | chromodomain helicase DNA binding protein 4 | 0.066 | ||
| Polr2a | polymerase (RNA) II (DNA directed) polypeptide A | 0.065 | ||
| Hist2h4 | histone cluster 2, H4 | 0.065 | ||
| Brca1 | breast cancer 1 | 0.062 | ||
| Asf1a | ASF1 anti-silencing function 1 homolog A (S. cerevisiae) | 0.062 | Mouse | |
| Topbp1 | topoisomerase (DNA) II binding protein 1 | 0.062 | ||
| Creb1 | cAMP responsive element binding protein 1 | 0.062 | ||
| Thoc2 | THO complex 2 | 0.058 | ||
| Taf3 | TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor | 0.054 | ||
| Slbp | stem-loop binding protein | 0.053 | ||
| Ubap2 | ubiquitin-associated protein 2 | 0.053 | ||
| Hist2h3c2-ps | histone cluster 2, H3c2, pseudogene | 0.052 | ||
| Sfpq | splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) | 0.052 | ||
| Hist1h2bb | histone cluster 1, H2bb | 0.048 | Mouse | |
| Hist2h2aa2 | histone cluster 2, H2aa2 | 0.045 | ||
| Bptf | bromodomain PHD finger transcription factor | 0.044 | ||
| Pten | phosphatase and tensin homolog | 0.043 | ||
| Hist2h2ab | histone cluster 2, H2ab | 0.042 | ||
| Eed | embryonic ectoderm development | 0.042 | ||
| Dtl | denticleless homolog (Drosophila) | 0.041 | ||
| Pcna | proliferating cell nuclear antigen | 0.041 | ||
| Hist1h1e | histone cluster 1, H1e | 0.040 | ||
| Mll5 | myeloid/lymphoid or mixed-lineage leukemia 5 | 0.039 | ||
| Scaf4 | SR-related CTD-associated factor 4 | 0.038 | ||
| Nasp | nuclear autoantigenic sperm protein (histone-binding) | 0.038 | Human | |
| Hmga1 | high mobility group AT-hook 1 | 0.037 | Human | |
| Crebbp | CREB binding protein | 0.037 | ||
| Myef2 | myelin basic protein expression factor 2, repressor | 0.035 | ||
| Cdk2 | cyclin-dependent kinase 2 | 0.035 | ||
| Safb | scaffold attachment factor B | 0.035 | ||
| Cbx3 | chromobox homolog 3 (Drosophila HP1 gamma) | 0.034 | Fly | |
| Foxi3 | forkhead box I3 | 0.033 | ||
| Tcf19 | transcription factor 19 | 0.033 | ||
| Usp7 | ubiquitin specific peptidase 7 | 0.033 | ||
| Mcm6 | minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae) | 0.032 | ||
| Mll3 | myeloid/lymphoid or mixed-lineage leukemia 3 | 0.031 | ||
| Mcm5 | minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae) | 0.031 | ||
| Chd8 | chromodomain helicase DNA binding protein 8 | 0.031 | ||
| Ncl | nucleolin | 0.030 | ||
| Chek1 | checkpoint kinase 1 homolog (S. pombe) | 0.029 | ||
| Gmnn | geminin | 0.028 | ||
| Kdm2b | lysine (K)-specific demethylase 2B | 0.028 | ||
| Fmr1 | fragile X mental retardation syndrome 1 homolog | 0.028 | Fly | |
| Axin1 | axin 1 | 0.028 | ||
| L3mbtl2 | l(3)mbt-like 2 (Drosophila) | 0.028 | ||
| Ccne1 | cyclin E1 | 0.028 | ||
| Mdm4 | transformed mouse 3T3 cell double minute 4 | 0.027 | ||
| Stk4 | serine/threonine kinase 4 | 0.026 | ||
| Hist1h1d | histone cluster 1, H1d | 0.026 | ||
| Tceal1 | transcription elongation factor A (SII)-like 1 | 0.026 | ||
| Ilf3 | interleukin enhancer binding factor 3 | 0.025 | ||
| Pum1 | pumilio 1 (Drosophila) | 0.025 | ||
| Hist1h1a | histone cluster 1, H1a | 0.025 | Mouse | |
| Med13l | mediator complex subunit 13-like | 0.025 | ||
| Hnrnpa2b1 | heterogeneous nuclear ribonucleoprotein A2/B1 | 0.025 | ||
| Fxr1 | fragile X mental retardation gene 1, autosomal homolog | 0.024 | Fly | |
| Tra2b | transformer 2 beta homolog (Drosophila) | 0.023 | ||
| Daxx | Fas death domain-associated protein | 0.023 | ||
| Ep300 | E1A binding protein p300 | 0.023 | ||
| Tmem40 | transmembrane protein 40 | 0.023 | ||
| Smarcc2 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 | 0.022 | ||
| Ubr4 | ubiquitin protein ligase E3 component n-recognin 4 | 0.022 | ||
| Ubtf | upstream binding transcription factor, RNA polymerase I | 0.022 | ||
| Lbr | lamin B receptor | 0.022 | ||
| Syncrip | synaptotagmin binding, cytoplasmic RNA interacting protein | 0.021 | ||
| Ran | RAN, member RAS oncogene family | 0.021 | ||
| Rassf1 | Ras association (RalGDS/AF-6) domain family member 1 | 0.021 | ||
| Ppig | peptidyl-prolyl isomerase G (cyclophilin G) | 0.020 | ||
| Hist1h2bk | histone cluster 1, H2bk | 0.020 | Mouse | |
| Hnrnpu | heterogeneous nuclear ribonucleoprotein U | 0.020 | ||
| Smc2 | structural maintenance of chromosomes 2 | 0.019 | ||
| Ect2 | ect2 oncogene | 0.019 | ||
| Yy1 | YY1 transcription factor | 0.019 | ||
| Cdca4 | cell division cycle associated 4 | 0.019 | ||
| Hist1h2ba | histone cluster 1, H2ba | 0.019 | ||
| Rbbp7 | retinoblastoma binding protein 7 | 0.018 | Yeast Fly | |
| Smc3 | structural maintenace of chromosomes 3 | 0.018 | ||
| Ptma | prothymosin alpha | 0.018 | ||
| Klhl24 | kelch-like 24 (Drosophila) | 0.018 | ||
| Hnrnpab | heterogeneous nuclear ribonucleoprotein A/B | 0.017 | ||
| Snw1 | SNW domain containing 1 | 0.017 | ||
| Cdk1 | cyclin-dependent kinase 1 | 0.017 | ||
| Wee1 | WEE 1 homolog 1 (S. pombe) | 0.017 | ||
| Hnrnpa1 | heterogeneous nuclear ribonucleoprotein A1 | 0.017 | ||
| Hmgb2 | high mobility group box 2 | 0.016 | ||
| Hist1h3f | histone cluster 1, H3f | 0.016 | ||
| Cdca7 | cell division cycle associated 7 | 0.016 | ||
| Lmnb1 | lamin B1 | 0.016 | ||
| Trim27 | tripartite motif-containing 27 | 0.016 | ||
| Rbl1 | retinoblastoma-like 1 (p107) | 0.015 | ||
| Cbll1 | Casitas B-lineage lymphoma-like 1 | 0.015 | ||
| Orc1 | origin recognition complex, subunit 1 | 0.015 | ||
| Thoc4 | THO complex 4 | 0.015 | ||
| Dna2 | DNA replication helicase 2 homolog (yeast) | 0.015 | ||
| Supt16h | suppressor of Ty 16 homolog (S. cerevisiae) | 0.015 | ||
| Mybbp1a | MYB binding protein (P160) 1a | 0.015 | ||
| Apc | adenomatosis polyposis coli | 0.015 | ||
| Ung | uracil DNA glycosylase | 0.015 | ||
| Smarcb1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 | 0.015 | ||
| Kdm5a | lysine (K)-specific demethylase 5A | 0.015 | ||
| Cenpk | centromere protein K | 0.014 | ||
| Ccar1 | cell division cycle and apoptosis regulator 1 | 0.014 | ||
| 2810474O19Rik | RIKEN cDNA 2810474O19 gene | 0.014 | ||
| Eif2c2 | eukaryotic translation initiation factor 2C, 2 | 0.014 | ||
| Hist1h3i | histone cluster 1, H3i | 0.014 | ||
| Pcbp1 | poly(rC) binding protein 1 | 0.014 | ||
| Smc4 | structural maintenance of chromosomes 4 | 0.014 | ||
| Baz1a | bromodomain adjacent to zinc finger domain 1A | 0.014 | Fly | |
| Ddx6 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 | 0.014 | ||
| Mga | MAX gene associated | 0.014 | ||
| Ss18 | synovial sarcoma translocation, Chromosome 18 | 0.014 | ||
| Ppp1cc | protein phosphatase 1, catalytic subunit, gamma isoform | 0.014 | ||
| Nup188 | nucleoporin 188 | 0.013 | ||
| Sap30 | sin3 associated polypeptide | 0.013 | ||
| Arid4b | AT rich interactive domain 4B (RBP1-like) | 0.013 | ||
| Polr1a | polymerase (RNA) I polypeptide A | 0.013 | ||
| Acin1 | apoptotic chromatin condensation inducer 1 | 0.013 | ||
| Zc3h18 | zinc finger CCCH-type containing 18 | 0.013 | ||
| Rfc4 | replication factor C (activator 1) 4 | 0.013 | ||
| Tfdp1 | transcription factor Dp 1 | 0.013 | ||
| Nucks1 | nuclear casein kinase and cyclin-dependent kinase substrate 1 | 0.013 | ||
| Mta1 | metastasis associated 1 | 0.012 | ||
| Ranbp1 | RAN binding protein 1 | 0.012 | ||
| Syce2 | synaptonemal complex central element protein 2 | 0.012 | ||
| D030056L22Rik | RIKEN cDNA D030056L22 gene | 0.012 | ||
| Brd1 | bromodomain containing 1 | 0.012 | ||
| Rbm14 | RNA binding motif protein 14 | 0.012 | ||
| Hira | histone cell cycle regulation defective homolog A (S. cerevisiae) | 0.012 | Human Yeast Fly | |
| Tcof1 | Treacher Collins Franceschetti syndrome 1, homolog | 0.012 | ||
| Pml | promyelocytic leukemia | 0.012 | ||
| Hnrnpd | heterogeneous nuclear ribonucleoprotein D | 0.012 | ||
| U2af2 | U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 | 0.012 | ||
| Setx | senataxin | 0.011 | ||
| Usp1 | ubiquitin specific peptidase 1 | 0.011 | ||
| Sap30l | SAP30-like | 0.011 | ||
| Snrpe | small nuclear ribonucleoprotein E | 0.011 | ||
| Nomo1 | nodal modulator 1 | 0.011 | ||
| Cbx8 | chromobox homolog 8 (Drosophila Pc class) | 0.011 | ||
| Ncdn | neurochondrin | 0.011 | ||
| Sin3a | transcriptional regulator, SIN3A (yeast) | 0.011 | ||
| Larp7 | La ribonucleoprotein domain family, member 7 | 0.011 | ||
| Ccne2 | cyclin E2 | 0.011 | ||
| Hist4h4 | histone cluster 4, H4 | 0.011 | ||
| Zfx | zinc finger protein X-linked | 0.011 | ||
| Hist1h2be | histone cluster 1, H2be | 0.010 | ||
| Arid2 | AT rich interactive domain 2 (ARID, RFX-like) | 0.010 | ||
| Pabpn1 | poly(A) binding protein, nuclear 1 | 0.010 | ||
| Atp13a1 | ATPase type 13A1 | 0.010 | ||
| Nipbl | Nipped-B homolog (Drosophila) | 0.010 | ||
| Ldhc | lactate dehydrogenase C | 0.010 | ||
| Hist1h2bf | histone cluster 1, H2bf | 0.010 | Mouse | |
| Rbm39 | RNA binding motif protein 39 | 0.010 | ||
| Hist3h2a | histone cluster 3, H2a | 0.010 | ||
| Smarcd3 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 | 0.010 |