IMP: Integrative Multi-species Prediction

Mus musculus

20 genes annotated in mouse

ribosome biogenesis

A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

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Known genes in the process in mouseInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "ribosome biogenesis"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "ribosome biogenesis" (in gray)

Name	Description	Probability	Func Analog Organism
Mybbp1a	MYB binding protein (P160) 1a	0.890
Wdr43	WD repeat domain 43	0.778	Yeast
Ddx21	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	0.750
Rplp0	ribosomal protein, large, P0	0.707
Cirh1a	cirrhosis, autosomal recessive 1A (human)	0.703	Human Yeast
Gnl3	guanine nucleotide binding protein-like 3 (nucleolar)	0.699
Tsr1	TSR1, 20S rRNA accumulation, homolog (yeast)	0.657
Wdr74	WD repeat domain 74	0.642
Mki67ip	Mki67 (FHA domain) interacting nucleolar phosphoprotein	0.604
Rrs1	RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	0.444
Rps3	ribosomal protein S3	0.443
Ccdc86	coiled-coil domain containing 86	0.374
Rpl3	ribosomal protein L3	0.335
Eed	embryonic ectoderm development	0.282
Rps3a	ribosomal protein S3A	0.279
Polr1e	polymerase (RNA) I polypeptide E	0.274
Ltv1	LTV1 homolog (S. cerevisiae)	0.271
Wdr77	WD repeat domain 77	0.247
Mak16	MAK16 homolog (S. cerevisiae)	0.243
Rrp15	ribosomal RNA processing 15 homolog (S. cerevisiae)	0.241
Utp20	UTP20, small subunit (SSU) processome component, homolog (yeast)	0.226
Nop56	NOP56 ribonucleoprotein homolog (yeast)	0.214	Yeast
Gnb2l1	guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	0.211
D19Bwg1357e	DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed	0.210
Nsun2	NOL1/NOP2/Sun domain family member 2	0.205
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	0.182
Lsg1	large subunit GTPase 1 homolog (S. cerevisiae)	0.178
Spata5	spermatogenesis associated 5	0.176	Yeast
Rrp12	ribosomal RNA processing 12 homolog (S. cerevisiae)	0.173
Rpl7	ribosomal protein L7	0.164	Human
Rsl1d1	ribosomal L1 domain containing 1	0.164
Gtpbp4	GTP binding protein 4	0.161
Nmd3	NMD3 homolog (S. cerevisiae)	0.158
Grwd1	glutamate-rich WD repeat containing 1	0.157	Yeast
Nufip1	nuclear fragile X mental retardation protein interacting protein 1	0.145
Cebpz	CCAAT/enhancer binding protein zeta	0.138
Exosc1	exosome component 1	0.137
Ftsj3	FtsJ homolog 3 (E. coli)	0.133
Wdr46	WD repeat domain 46	0.131	Yeast
Rpl4	ribosomal protein L4	0.130
Per2	period homolog 2 (Drosophila)	0.130
Rps7	ribosomal protein S7	0.129
Eif2s1	eukaryotic translation initiation factor 2, subunit 1 alpha	0.120
Nolc1	nucleolar and coiled-body phosphoprotein 1	0.112
Wdr55	WD repeat domain 55	0.112
Rpl8	ribosomal protein L8	0.109
Tomm70a	translocase of outer mitochondrial membrane 70 homolog A (yeast)	0.105
Rpl15	ribosomal protein L15	0.103
Rpf2	ribosome production factor 2 homolog (S. cerevisiae)	0.097	Yeast
Nop2	NOP2 nucleolar protein homolog (yeast)	0.097
Rpl11	ribosomal protein L11	0.097
Rplp1	ribosomal protein, large, P1	0.094
Nip7	nuclear import 7 homolog (S. cerevisiae)	0.094
Trp53	transformation related protein 53	0.092
Gnl2	guanine nucleotide binding protein-like 2 (nucleolar)	0.088
Ttc27	tetratricopeptide repeat domain 27	0.086
Eif1a	eukaryotic translation initiation factor 1A	0.084
Wdr3	WD repeat domain 3	0.083	Yeast
Nop14	NOP14 nucleolar protein homolog (yeast)	0.082
Ddx51	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	0.081	Yeast
Rrp9	RRP9, small subunit (SSU) processome component, homolog (yeast)	0.078
Abt1	activator of basal transcription 1	0.076
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	0.075
Rpl23	ribosomal protein L23	0.074
Rps19	ribosomal protein S19	0.073	Human
Npm1	nucleophosmin 1	0.073
Lyar	Ly1 antibody reactive clone	0.070
Tars	threonyl-tRNA synthetase	0.070
Mphosph10	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	0.069
Pwp2	PWP2 periodic tryptophan protein homolog (yeast)	0.068	Yeast
Rps15a	ribosomal protein S15A	0.068
Tsc2	tuberous sclerosis 2	0.065
Rps5	ribosomal protein S5	0.064	Yeast
Rpl19	ribosomal protein L19	0.064
Rpl10	ribosomal protein 10	0.063
Ddx10	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	0.062	Yeast
Rars	arginyl-tRNA synthetase	0.062
D10Wsu102e	DNA segment, Chr 10, Wayne State University 102, expressed	0.061
Ppan	peter pan homolog (Drosophila)	0.061	Yeast
Eif3d	eukaryotic translation initiation factor 3, subunit D	0.060
Rpl6	ribosomal protein L6	0.057	Yeast
Eef1a1	eukaryotic translation elongation factor 1 alpha 1	0.057
Rpl13	ribosomal protein L13	0.055
Gart	phosphoribosylglycinamide formyltransferase	0.055
Fbl	fibrillarin	0.052
Rpl7a	ribosomal protein L7A	0.052
Pprc1	peroxisome proliferative activated receptor, gamma, coactivator-related 1	0.051
Rnaseh1	ribonuclease H1	0.050
Ngdn	neuroguidin, EIF4E binding protein	0.049
Ebna1bp2	EBNA1 binding protein 2	0.049
Rpl13a	ribosomal protein L13A	0.048
Noc3l	nucleolar complex associated 3 homolog (S. cerevisiae)	0.048
Orc2	origin recognition complex, subunit 2	0.047
Rpgrip1l	Rpgrip1-like	0.046
Pno1	partner of NOB1 homolog (S. cerevisiae)	0.045
Nvl	nuclear VCP-like	0.044	Yeast
Wdr36	WD repeat domain 36	0.044	Yeast Zebrafish
Eef1e1	eukaryotic translation elongation factor 1 epsilon 1	0.044
Thumpd1	THUMP domain containing 1	0.044
Rnmtl1	RNA methyltransferase like 1	0.044
Ppp2ca	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	0.043
Smyd5	SET and MYND domain containing 5	0.043
Rps14	ribosomal protein S14	0.041
Pak1ip1	PAK1 interacting protein 1	0.041	Yeast
Fam203a	family with sequence similarity 203, member A	0.041
Rps15	ribosomal protein S15	0.041
Rpl37a	ribosomal protein L37a	0.039
Rpl12	ribosomal protein L12	0.038	Yeast
Utp14a	UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	0.037
Nop58	NOP58 ribonucleoprotein homolog (yeast)	0.037	Yeast
Apc	adenomatosis polyposis coli	0.035
Zfp259	zinc finger protein 259	0.035
Cct2	chaperonin containing Tcp1, subunit 2 (beta)	0.034
Wdr75	WD repeat domain 75	0.033
Dimt1	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	0.033
Rps28	ribosomal protein S28	0.033
Srsf7	serine/arginine-rich splicing factor 7	0.032
Smn1	survival motor neuron 1	0.032
Ppat	phosphoribosyl pyrophosphate amidotransferase	0.031
Rpl18	ribosomal protein L18	0.031
Pes1	pescadillo homolog 1, containing BRCT domain (zebrafish)	0.030
Vapa	vesicle-associated membrane protein, associated protein A	0.030
Rpl26	ribosomal protein L26	0.030
Nop16	NOP16 nucleolar protein homolog (yeast)	0.030
BC027231	cDNA sequence BC027231	0.030
Per1	period homolog 1 (Drosophila)	0.030
Rps23	ribosomal protein S23	0.030	Yeast
Utp18	UTP18, small subunit (SSU) processome component, homolog (yeast)	0.029	Yeast
Rpl38	ribosomal protein L38	0.029
Rrp1b	ribosomal RNA processing 1 homolog B (S. cerevisiae)	0.029
Ddx56	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	0.029	Yeast
Naca	nascent polypeptide-associated complex alpha polypeptide	0.029
Zcchc10	zinc finger, CCHC domain containing 10	0.029
Sf3b3	splicing factor 3b, subunit 3	0.029
Surf6	surfeit gene 6	0.028
Bysl	bystin-like	0.027
Emg1	EMG1 nucleolar protein homolog (S. cerevisiae)	0.027
Serbp1	serpine1 mRNA binding protein 1	0.027
Rpl10a	ribosomal protein L10A	0.026
Rps6	ribosomal protein S6	0.026
Etf1	eukaryotic translation termination factor 1	0.026
Nol8	nucleolar protein 8	0.026	Human
Gpatch4	G patch domain containing 4	0.025
Ppp1cb	protein phosphatase 1, catalytic subunit, beta isoform	0.025
2610027L16Rik	RIKEN cDNA 2610027L16 gene	0.025
Rpsa	ribosomal protein SA	0.025
Pwp1	PWP1 homolog (S. cerevisiae)	0.025	Yeast
Ddx20	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	0.025
Mrpl3	mitochondrial ribosomal protein L3	0.025
Fau	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	0.024
Haus3	HAUS augmin-like complex, subunit 3	0.024
Dph5	DPH5 homolog (S. cerevisiae)	0.024
Noc4l	nucleolar complex associated 4 homolog (S. cerevisiae)	0.024
Rbm19	RNA binding motif protein 19	0.024	Yeast Worm
Rpl32	ribosomal protein L32	0.024
Arntl	aryl hydrocarbon receptor nuclear translocator-like	0.023
Eif2s3x	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	0.023
Dcaf13	DDB1 and CUL4 associated factor 13	0.023	Yeast
Riok2	RIO kinase 2 (yeast)	0.023
Ctnnb1	catenin (cadherin associated protein), beta 1	0.023
Hnrnpk	heterogeneous nuclear ribonucleoprotein K	0.023
Prmt6	protein arginine N-methyltransferase 6	0.022
Isg20l2	interferon stimulated exonuclease gene 20-like 2	0.022
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	0.022
Tomm20	translocase of outer mitochondrial membrane 20 homolog (yeast)	0.022
Rpl21	ribosomal protein L21	0.022
Vps16	vacuolar protein sorting 16 (yeast)	0.021
Polr1b	polymerase (RNA) I polypeptide B	0.021
Rps4x	ribosomal protein S4, X-linked	0.021
Cnbp	cellular nucleic acid binding protein	0.021
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	0.021
Znhit6	zinc finger, HIT type 6	0.021
Cyld	cylindromatosis (turban tumor syndrome)	0.020
Utp3	UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	0.020
Pus7l	pseudouridylate synthase 7 homolog (S. cerevisiae)-like	0.020
Rpl27a	ribosomal protein L27A	0.020
Cycs	cytochrome c, somatic	0.020
Mapkap1	mitogen-activated protein kinase associated protein 1	0.020
Twistnb	TWIST neighbor	0.020
Rrp8	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	0.020
Brix1	BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)	0.020	Yeast
Eif3j	eukaryotic translation initiation factor 3, subunit J	0.020	Yeast
Ncbp1	nuclear cap binding protein subunit 1	0.020
Elac2	elaC homolog 2 (E. coli)	0.019
Dnajc2	DnaJ (Hsp40) homolog, subfamily C, member 2	0.019	Yeast
Hnrnpa3	heterogeneous nuclear ribonucleoprotein A3	0.019
Iars	isoleucine-tRNA synthetase	0.019
Sdad1	SDA1 domain containing 1	0.019
Rpl5	ribosomal protein L5	0.019
Pa2g4	proliferation-associated 2G4	0.018
Jmjd6	jumonji domain containing 6	0.018
Ddx18	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	0.018	Yeast
Nf2	neurofibromatosis 2	0.018
Rpl36a	ribosomal protein L36A	0.018
Rint1	RAD50 interactor 1	0.018
Krr1	KRR1, small subunit (SSU) processome component, homolog (yeast)	0.018
Rpl30	ribosomal protein L30	0.018
Mrps18b	mitochondrial ribosomal protein S18B	0.017
Toe1	target of EGR1, member 1 (nuclear)	0.017
Tax1bp1	Tax1 (human T-cell leukemia virus type I) binding protein 1	0.017
Naa50	N(alpha)-acetyltransferase 50, NatE catalytic subunit	0.017
Gar1	GAR1 ribonucleoprotein homolog (yeast)	0.017
Rrp7a	ribosomal RNA processing 7 homolog A (S. cerevisiae)	0.017
Rcl1	RNA terminal phosphate cyclase-like 1	0.017
Thoc3	THO complex 3	0.017
Kti12	KTI12 homolog, chromatin associated (S. cerevisiae)	0.017
Eif2s2	eukaryotic translation initiation factor 2, subunit 2 (beta)	0.017
Utp6	UTP6, small subunit (SSU) processome component, homolog (yeast)	0.016
Prps1	phosphoribosyl pyrophosphate synthetase 1	0.016
Rps26	ribosomal protein S26	0.016
Rrp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	0.016
Rpl23a	ribosomal protein L23A	0.016	Yeast
Myc	myelocytomatosis oncogene	0.016
Aen	apoptosis enhancing nuclease	0.016
Rpl22	ribosomal protein L22	0.016
Ythdf2	YTH domain family 2	0.016
Rptor	regulatory associated protein of MTOR, complex 1	0.015
Rrn3	RRN3 RNA polymerase I transcription factor homolog (yeast)	0.015
Imp4	IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.015	Yeast
Heatr1	HEAT repeat containing 1	0.015
Gpn3	GPN-loop GTPase 3	0.015
Ddx1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	0.015
Ppp2r2a	protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	0.015
Gm5805	predicted gene 5805	0.015
Rpp40	ribonuclease P 40 subunit (human)	0.015
Mettl2	methyltransferase like 2	0.015
Srm	spermidine synthase	0.015
Timm8a1	translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	0.014
Nup43	nucleoporin 43	0.014
Utp15	UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.014	Yeast
Ddx52	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	0.014	Yeast
Esf1	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	0.014	Yeast
Plrg1	pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	0.014
Rplp2	ribosomal protein, large P2	0.014
Gm10119	predicted gene 10119	0.014
Naa25	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	0.014
Zmynd19	zinc finger, MYND domain containing 19	0.013
Gm10335	predicted gene 10335	0.013
Nup54	nucleoporin 54	0.013
Eef1b2	eukaryotic translation elongation factor 1 beta 2	0.013
Rps11	ribosomal protein S11	0.013
Umps	uridine monophosphate synthetase	0.013
Nol11	nucleolar protein 11	0.013
Trnt1	tRNA nucleotidyl transferase, CCA-adding, 1	0.013
Ddx3x	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	0.013	Human
Rpl7l1	ribosomal protein L7-like 1	0.013
Rps13	ribosomal protein S13	0.013
Cdk11b	cyclin-dependent kinase 11B	0.013
Rg9mtd2	RNA (guanine-9-) methyltransferase domain containing 2	0.013
Clock	circadian locomotor output cycles kaput	0.013
Mis12	MIS12 homolog (yeast)	0.013
Usp39	ubiquitin specific peptidase 39	0.013
Dph2	DPH2 homolog (S. cerevisiae)	0.013
Rps17	ribosomal protein S17	0.013
Uba52	ubiquitin A-52 residue ribosomal protein fusion product 1	0.013
Pinx1	PIN2/TERF1 interacting, telomerase inhibitor 1	0.013
Psmd11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	0.013
Dhx9	DEAH (Asp-Glu-Ala-His) box polypeptide 9	0.013
Eif2b2	eukaryotic translation initiation factor 2B, subunit 2 beta	0.013
Eif2b3	eukaryotic translation initiation factor 2B, subunit 3	0.013
Rps2	ribosomal protein S2	0.013	Rat
Xpo5	exportin 5	0.013
Hnrnpa1	heterogeneous nuclear ribonucleoprotein A1	0.012
Rps27a	ribosomal protein S27A	0.012
Eif5	eukaryotic translation initiation factor 5	0.012
Ranbp2	RAN binding protein 2	0.012
Mat2a	methionine adenosyltransferase II, alpha	0.012
Cry1	cryptochrome 1 (photolyase-like)	0.012
Farsa	phenylalanyl-tRNA synthetase, alpha subunit	0.012
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	0.012
Ipo5	importin 5	0.012
Prmt3	protein arginine N-methyltransferase 3	0.012
Tsn	translin	0.012
Abce1	ATP-binding cassette, sub-family E (OABP), member 1	0.012	Yeast
Psen1	presenilin 1	0.012
Rpl27	ribosomal protein L27	0.012
Rps25	ribosomal protein S25	0.011
Gtf2h2	general transcription factor II H, polypeptide 2	0.011
Slc25a32	solute carrier family 25, member 32	0.011
Nubp1	nucleotide binding protein 1	0.011
Gemin6	gem (nuclear organelle) associated protein 6	0.011
Rpl14	ribosomal protein L14	0.011
Nsun5	NOL1/NOP2/Sun domain family, member 5	0.011
Npm3	nucleoplasmin 3	0.011
Rpl18a	ribosomal protein L18A	0.011
Ssb	Sjogren syndrome antigen B	0.011
Nol10	nucleolar protein 10	0.011
Ppia	peptidylprolyl isomerase A	0.011
Abcf2	ATP-binding cassette, sub-family F (GCN20), member 2	0.011	Yeast
Tbrg4	transforming growth factor beta regulated gene 4	0.011
Surf2	surfeit gene 2	0.011
Cct8	chaperonin containing Tcp1, subunit 8 (theta)	0.011
Xab2	XPA binding protein 2	0.011
Las1l	LAS1-like (S. cerevisiae)	0.010
Eif3b	eukaryotic translation initiation factor 3, subunit B	0.010
Phax	phosphorylated adaptor for RNA export	0.010
Ints2	integrator complex subunit 2	0.010
Zfp593	zinc finger protein 593	0.010
Dars	aspartyl-tRNA synthetase	0.010
Rad17	RAD17 homolog (S. pombe)	0.010
Foxp3	forkhead box P3	0.010
Hars	histidyl-tRNA synthetase	0.010
Eif3f	eukaryotic translation initiation factor 3, subunit F	0.010
Actr3	ARP3 actin-related protein 3 homolog (yeast)	0.010
Rab1	RAB1, member RAS oncogene family	0.010
Rps10	ribosomal protein S10	0.010
Eif3l	eukaryotic translation initiation factor 3, subunit L	0.010
Ppih	peptidyl prolyl isomerase H	0.010