IMP: Integrative Multi-species Prediction

Rattus norvegicus

34 genes annotated in rat

chromatin organization

Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.

Loading network...

In addition to gene-name show these genes:

Known genes in the process in ratInclude functional analogs

Network Filters

Minimum relationship confidence:

Maximum number of genes:

Highlight known relationships in gold.

Graphical Options

Adjust edge length:

Adjust node size:

Fixed layout

Black background

Low confidence color:

Med confidence color:

High confidence color:

Hide the legend in the network

Save Options

Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "chromatin organization"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "chromatin organization" (in gray)

Name	Description	Probability	Func Analog Organism
Mcm7	minichromosome maintenance complex component 7	0.338
Phf12	PHD finger protein 12	0.211
Top2a	topoisomerase (DNA) II alpha	0.152
Bat1	HLA-B associated transcript 1	0.110	Fly
Casp2	caspase 2	0.109
Dhx30	DEAH (Asp-Glu-Ala-His) box polypeptide 30	0.102
Mcm6	minichromosome maintenance complex component 6	0.096
Map2k7	mitogen activated protein kinase kinase 7	0.087
Srrm1	serine/arginine repetitive matrix 1	0.071
Actb	actin, beta	0.070	Yeast
Parp1	poly (ADP-ribose) polymerase 1	0.065
Falz	fetal Alzheimer antigen	0.065
Brd4	bromodomain containing 4	0.064	Rat
Ube2i	ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast)	0.058
Srrm2	serine/arginine repetitive matrix 2	0.054
Ssrp1	structure specific recognition protein 1	0.053	Fly
Med1	mediator complex subunit 1	0.053
Pcna	proliferating cell nuclear antigen	0.048
Ehmt1	euchromatic histone-lysine N-methyltransferase 1	0.047	Human Mouse Rat
Racgap1	Rac GTPase-activating protein 1	0.043
LOC100364212	heterogeneous nuclear ribonucleoprotein K-like	0.039
Cand1	cullin-associated and neddylation-dissociated 1	0.038
Trim28	tripartite motif-containing 28	0.036	Fly
Tubb5	tubulin, beta 5	0.035
Ldb1	LIM domain binding 1	0.032
Psmd2	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	0.032
Nfat5	nuclear factor of activated T-cells 5	0.032
Cdc20	cell division cycle 20 homolog (S. cerevisiae)	0.031
Pttg1	pituitary tumor-transforming 1	0.031
Sumo3	SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae)	0.031
Rbbp7	retinoblastoma binding protein 7	0.031	Yeast Fly
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	0.031
Foxm1	forkhead box M1	0.030
Smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.030
Tuba1c	tubulin, alpha 1C	0.030
Hnrnpul1	heterogeneous nuclear ribonucleoprotein U-like 1	0.029
Ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	0.029
Hnrnpr	heterogeneous nuclear ribonucleoprotein R	0.028
Wiz	widely-interspaced zinc finger motifs	0.027
Cdk4	cyclin-dependent kinase 4	0.027
Myst3	MYST histone acetyltransferase (monocytic leukemia) 3	0.027	Human
LOC688211	hypothetical protein LOC688211	0.027
Zfp278	zinc finger protein 278	0.027
Ube2c	ubiquitin-conjugating enzyme E2C	0.027
Eif1ay	eukaryotic translation initiation factor 1A, Y-linked	0.027
Safb	scaffold attachment factor B	0.026
Hnrnpl	heterogeneous nuclear ribonucleoprotein L	0.026
Nup205	nucleoporin 205	0.026
Itgb1	integrin, beta 1	0.026
Rnf166	ring finger protein 166	0.025
Gtf3c1	general transcription factor IIIC, polypeptide 1, alpha	0.025
Pin1	peptidylprolyl cis/trans isomerase, NIMA-interacting 1	0.025
Eed	embryonic ectoderm development	0.025
Klf9	Kruppel-like factor 9	0.025
Kdm2a	lysine (K)-specific demethylase 2A	0.025	Human
Acin1	apoptotic chromatin condensation inducer 1	0.025
Tmpo	thymopoietin	0.025
Dullard	Dullard homolog (Xenopus laevis)	0.025
Nup88	nucleoporin 88	0.024
Daxx	death-domain associated protein	0.024
Traf4af1	TRAF4 associated factor 1	0.024
Rrm2	ribonucleotide reductase M2	0.024
Arid4a	AT rich interactive domain 4A (Rbp1 like)	0.024
Sf3b3	splicing factor 3b, subunit 3	0.024
Gnb2	guanine nucleotide binding protein (G protein), beta polypeptide 2	0.024
Zyx	zyxin	0.023
Ppp2r2a	protein phosphatase 2 (formerly 2A), regulatory subunit B, alpha isoform	0.023
Rnps1	ribonucleic acid binding protein S1	0.023
Pom121	nuclear pore membrane protein 121	0.023
Dcaf15	DDB1 and CUL4 associated factor 15	0.023
Nucks1	nuclear casein kinase and cyclin-dependent kinase substrate 1	0.023
Ctsd	cathepsin D	0.023
Lbr	lamin B receptor	0.022
Ppm1g	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	0.022
Cggbp1	CGG triplet repeat binding protein 1	0.022
Sin3a	SIN3 homolog A, transcription regulator (yeast)	0.022
Snrpa	small nuclear ribonucleoprotein polypeptide A	0.022
Dynll1	dynein light chain LC8-type 1	0.022
Pum1	pumilio homolog 1 (Drosophila)	0.021
Wdr26	WD repeat domain 26	0.021
Cdc2l6	cell division cycle 2-like 6 (CDK8-like)	0.021
Setd6	SET domain containing 6	0.021
Ppm1b	protein phosphatase 1B, magnesium dependent, beta isoform	0.021
Actr3	ARP3 actin-related protein 3 homolog (yeast)	0.021
Flna	filamin A, alpha	0.020
Sik1	salt-inducible kinase 1	0.020
Cdkn3	cyclin-dependent kinase inhibitor 3	0.020
Gps1	G protein pathway suppressor 1	0.020
Eif3b	eukaryotic translation initiation factor 3, subunit B	0.020
Supt16h	suppressor of Ty 16 homolog (S. cerevisiae)	0.020
Madd	MAP-kinase activating death domain	0.020
LOC687711	similar to small nuclear ribonucleoprotein D3	0.020
Hmgb2	high mobility group box 2	0.019
Zc3h7b	zinc finger CCCH-type containing 7B	0.019
Lrrc47	leucine rich repeat containing 47	0.019
Rqcd1	rcd1 (required for cell differentiation) homolog 1 (S. pombe)	0.019
Rara	retinoic acid receptor, alpha	0.019
Sumo1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	0.018
Bap1	BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)	0.018
Cyth2	cytohesin 2	0.018
Sfrs4	splicing factor, arginine/serine-rich 4	0.018
Deaf1	deformed epidermal autoregulatory factor 1 (Drosophila)	0.018
Cdk9	cyclin-dependent kinase 9	0.018	Human Yeast
Sin3b	SIN3 homolog B, transcription regulator (yeast)	0.018
Rock2	Rho-associated coiled-coil containing protein kinase 2	0.018
Mcm3	minichromosome maintenance complex component 3	0.017
Brms1l	breast cancer metastasis-suppressor 1-like	0.017
Vasp	vasodilator-stimulated phosphoprotein	0.017
Mesdc2	mesoderm development candidate 2	0.017
Brd3	bromodomain containing 3	0.017	Rat
Wbp11	WW domain binding protein 11	0.017
Akt1	v-akt murine thymoma viral oncogene homolog 1	0.017
Cops7b	COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)	0.016
Pi4kb	phosphatidylinositol 4-kinase, catalytic, beta	0.016
Tfip11	tuftelin interacting protein 11	0.016
Ufd1l	ubiquitin fusion degradation 1 like (yeast)	0.016
Usp7	ubiquitin specific peptidase 7 (herpes virus-associated)	0.016	Fly
Gdap1	ganglioside-induced differentiation-associated-protein 1	0.016
Fen1	flap structure-specific endonuclease 1	0.016
Farsa	phenylalanyl-tRNA synthetase, alpha subunit	0.016
Ulk1	Unc-51 like kinase 1 (C. elegans)	0.016
H2afy	H2A histone family, member Y	0.016	Human
Rprd1b	regulation of nuclear pre-mRNA domain containing 1B	0.016
Cxxc5	CXXC finger 5	0.015
Mta2	metastasis associated 1 family, member 2	0.015
Znf282	zinc finger protein 282	0.015
Tm2d1	TM2 domain containing 1	0.015
Phax	phosphorylated adaptor for RNA export	0.015
Znf646	zinc finger protein 646	0.015
Sfrs1	splicing factor, arginine/serine-rich 1	0.015
Cct3	chaperonin containing Tcp1, subunit 3 (gamma)	0.015
Ankrd52	ankyrin repeat domain 52	0.015
Camk1	calcium/calmodulin-dependent protein kinase I	0.015
Hif1a	hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)	0.015
Clpb	ClpB caseinolytic peptidase B homolog (E. coli)	0.015
Kif2c	kinesin family member 2C	0.015
LOC690911	similar to Msx2-interacting protein (SPEN homolog) (SMART/HDAC1-associated repressor protein)	0.015
Mettl9	methyltransferase like 9	0.015
Rbm10	RNA binding motif protein 10	0.014
Birc5	baculoviral IAP repeat-containing 5	0.014
Hdlbp	high density lipoprotein binding protein	0.014	Fly
Ehmt2	euchromatic histone lysine N-methyltransferase 2	0.014
Snrnp70	small nuclear ribonucleoprotein 70 (U1)	0.014
Znf394	zinc finger protein 394	0.014
Rere	arginine-glutamic acid dipeptide (RE) repeats	0.014	Mouse
Ubtf	upstream binding transcription factor, RNA polymerase I	0.014
Pogz	pogo transposable element with ZNF domain	0.014
Psap	prosaposin	0.014
Grk6	G protein-coupled receptor kinase 6	0.014
Flcn	folliculin	0.014	Mouse
Mcm5	minichromosome maintenance complex component 5	0.014
Xpo5	exportin 5	0.014
Dnmt1	DNA (cytosine-5-)-methyltransferase 1	0.014	Human
Gigyf1	GRB10 interacting GYF protein 1	0.014
Csnk2a2	casein kinase 2, alpha prime polypeptide	0.014
Ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.014
Cks2	CDC28 protein kinase regulatory subunit 2	0.014
Ppp1cc	protein phosphatase 1, catalytic subunit, gamma isoform	0.014	Yeast
Kif22	kinesin family member 22	0.014
Smarcd2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	0.014	Human
Ppp2cb	protein phosphatase 2, catalytic subunit, beta isoform	0.014
Stip1	stress-induced phosphoprotein 1	0.014
Mknk2	MAP kinase-interacting serine/threonine kinase 2	0.014
Taok1	TAO kinase 1	0.014
Kat5	K(lysine) acetyltransferase 5	0.014
Prr3	proline rich 3	0.013
Rad23a	RAD23 homolog A (S. cerevisiae)	0.013
Triobp	TRIO and F-actin binding protein	0.013
Snrpb	small nuclear ribonucleoprotein polypeptides B and B1	0.013
Ep300	E1A binding protein p300	0.013
Ranbp3	RAN binding protein 3	0.013
Spc25	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	0.013
Lmbr1l	limb region 1-like homolog (mouse)	0.013
Hsp90aa1	heat shock protein 90, alpha (cytosolic), class A member 1	0.013
Slc12a4	solute carrier family 12 (potassium/chloride transporters), member 4	0.013
Impact	imprinted and ancient	0.013
Dctn1	dynactin 1	0.013
Casc3	cancer susceptibility candidate 3	0.013
Terf2	telomeric repeat binding factor 2	0.013
Ngfr	nerve growth factor receptor (TNFR superfamily, member 16)	0.013
Cdk1	cyclin-dependent kinase 1	0.013
Tomm20	translocase of outer mitochondrial membrane 20 homolog (yeast)	0.013
MGC112830	similar to transcription factor	0.013
Exoc7	exocyst complex component 7	0.013
Morc2	MORC family CW-type zinc finger 2	0.013
Tecr	trans-2,3-enoyl-CoA reductase	0.013
Pitpnb	phosphatidylinositol transfer protein, beta	0.013
Ppp1cb	protein phosphatase 1, catalytic subunit, beta isoform	0.013
Polr2g	polymerase (RNA) II (DNA directed) polypeptide G	0.013
Nup210	nucleoporin 210	0.013
Tcfe2a	transcription factor E2a	0.013	Mouse
Hprt1	hypoxanthine phosphoribosyltransferase 1	0.013
Cnot1	CCR4-NOT transcription complex, subunit 1	0.013
Hcfc1	host cell factor C1	0.013	Human Fly
Prc1	protein regulator of cytokinesis 1	0.013
Adnp	activity-dependent neuroprotector homeobox	0.013
Puf60	poly-U binding splicing factor 60	0.013
Calm2	calmodulin 2	0.013
Numa1	nuclear mitotic apparatus protein 1	0.013
Txndc15	thioredoxin domain containing 15	0.012
Asna1	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	0.012
Tpm3	tropomyosin 3, gamma	0.012
Nudc	nuclear distribution gene C homolog (A. nidulans)	0.012
Adcy6	adenylate cyclase 6	0.012
Cdca8	cell division cycle associated 8	0.012
Hirip3	HIRA interacting protein 3	0.012
Cbr1	carbonyl reductase 1	0.012
Ampd2	adenosine monophosphate deaminase 2 (isoform L)	0.012
Polr2a	polymerase (RNA) II (DNA directed) polypeptide A	0.012
Prkag1	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	0.012
Kdm6b	lysine (K)-specific demethylase 6B	0.012
Slc23a3	solute carrier family 23 (nucleobase transporters), member 3	0.012
Pdp1	pyruvate dehyrogenase phosphatase catalytic subunit 1	0.012
Csda	cold shock domain protein A	0.012
Serbp1	Serpine1 mRNA binding protein 1	0.012
Setd5	SET domain containing 5	0.012
Mettl13	methyltransferase like 13	0.012
Actg1	actin, gamma 1	0.012	Yeast
Timeless	timeless homolog (Drosophila)	0.012
Cc2d1b	coiled-coil and C2 domain containing 1B	0.012
Arih2	ariadne homolog 2 (Drosophila)	0.012
Ccnb1	cyclin B1	0.012
Cstf1	cleavage stimulation factor, 3' pre-RNA, subunit 1	0.012
Tnrc6a	trinucleotide repeat containing 6a	0.012
Hs2st1	heparan sulfate 2-O-sulfotransferase 1	0.012
Flii	flightless I homolog (Drosophila)	0.012
Khsrp	KH-type splicing regulatory protein	0.012
Hmmr	hyaluronan mediated motility receptor (RHAMM)	0.012
Strn4	striatin, calmodulin binding protein 4	0.012
Chd4	chromodomain helicase DNA binding protein 4	0.012
Troap	trophinin associated protein	0.012
Lzts2	leucine zipper, putative tumor suppressor 2	0.012
Fundc1	FUN14 domain containing 1	0.012
Dhps	deoxyhypusine synthase	0.012
Ogfr	opioid growth factor receptor	0.012
Tom1	target of myb1 homolog (chicken)	0.012
Stub1	STIP1 homology and U-Box containing protein 1	0.012
Bdkrb2	bradykinin receptor B2	0.011
Rabac1	Rab acceptor 1 (prenylated)	0.011
Rnf138	ring finger protein 138	0.011
Map2k5	mitogen activated protein kinase kinase 5	0.011
Rpn1	ribophorin I	0.011
Pard3	par-3 (partitioning defective 3) homolog (C. elegans)	0.011
RGD1564560	similar to RCK	0.011
Ruvbl1	RuvB-like 1 (E. coli)	0.011
Phf2	PHD finger protein 2	0.011	Mouse
Abcc5	ATP-binding cassette, subfamily C (CFTR/MRP), member 5	0.011
Rnf216	ring finger protein 216	0.011
Ash1l	ash1 (absent, small, or homeotic)-like (Drosophila)	0.011
Mll5	myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)	0.011	Human
Acbd3	acyl-Coenzyme A binding domain containing 3	0.011
Blmh	bleomycin hydrolase	0.011
Dapk3	death-associated protein kinase 3	0.011
Baz2b	bromodomain adjacent to zinc finger domain, 2B	0.011
Podxl2	podocalyxin-like 2	0.011
Gls	glutaminase	0.011
Ppm1l	protein phosphatase 1 (formerly 2C)-like	0.011
Rab28	RAB28, member RAS oncogene family	0.011
Ddx17	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	0.011
Pdia6	protein disulfide isomerase family A, member 6	0.011
Ctbp1	C-terminal binding protein 1	0.011	Human
Rai1	retinoic acid induced 1	0.011
H2afx	H2A histone family, member X	0.011
Nxf1	nuclear RNA export factor 1	0.011
Tgfbr2	transforming growth factor, beta receptor II	0.011
Ssbp3	single stranded DNA binding protein 3	0.011
Ddx42	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	0.011
Nfrkb	nuclear factor related to kappa B binding protein	0.011
Set	SET nuclear oncogene	0.011
Mkl1	megakaryoblastic leukemia (translocation) 1	0.011
Taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	0.011
Brp16	brain protein 16	0.011
Wdr5	WD repeat domain 5	0.011	Human Mouse Worm Fly
LOC100360986	mCG1035404-like	0.011
Cetn3	centrin, EF-hand protein, 3 (CDC31 homolog, yeast)	0.011
Tmod2	tropomodulin 2	0.011
Mak10	MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae)	0.011
Neo1	neogenin homolog 1 (chicken)	0.011
Anxa2	annexin A2	0.011
Secisbp2	SECIS binding protein 2	0.011
Rfx7	regulatory factor X, 7	0.011
RGD735175	hypothetical protein MGC:72616	0.011
Suv420h1	suppressor of variegation 4-20 homolog 1 (Drosophila)	0.011	Human
Ino80c	INO80 complex subunit C	0.011
Rap1b	RAP1B, member of RAS oncogene family	0.011
Asf1b	ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	0.010	Human
Map2k4	mitogen activated protein kinase kinase 4	0.010
Brp44l	brain protein 44-like	0.010
Kifc1	kinesin family member C1	0.010
LOC100362920	rCG48622-like	0.010
Vars2	valyl-tRNA synthetase 2, mitochondrial (putative)	0.010
Tsc2	tuberous sclerosis 2	0.010
Srpk1	SFRS protein kinase 1	0.010
Gata4	GATA binding protein 4	0.010
Rab14	RAB14, member RAS oncogene family	0.010
Nat5	N-acetyltransferase 5	0.010
Cdc42	cell division cycle 42 (GTP binding protein)	0.010
Wdr8	WD repeat domain 8	0.010
Pabpn1	poly(A) binding protein, nuclear 1	0.010
Fbxo11	F-box protein 11	0.010
Whsc1l1	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	0.010	Mouse
Rsf1	remodeling and spacing factor 1	0.010
Slc12a6	solute carrier family 12, member 6	0.010
Zfp64	zinc finger protein 64	0.010
RGD1307799	similar to RIKEN cDNA 2400003C14	0.010
LOC100361208	transmembrane protein 39b	0.010
Hist1h1a	histone cluster 1, H1a	0.010
Elavl1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	0.010
Sebox	SEBOX homeobox	0.010
Coq2	coenzyme Q2 homolog, prenyltransferase (yeast)	0.010
Fkrp	fukutin related protein	0.010
Eif3e	eukaryotic translation initiation factor 3, subunit E	0.010
Cct7	chaperonin containing Tcp1, subunit 7 (eta)	0.010
Vezf1	vascular endothelial zinc finger 1	0.010
Pdhb	pyruvate dehydrogenase (lipoamide) beta	0.010
Gmip	Gem-interacting protein	0.010