IMP: Integrative Multi-species Prediction

Rattus norvegicus

4 genes annotated in rat

Multi-species View

dna packaging

GO:0006323

Any process in which DNA and associated proteins are formed into a compact, orderly structure.

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Known genes in the process in ratInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "dna packaging"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "dna packaging" (in gray)

Name	Description	Probability	Func Analog Organism
Pttg1	pituitary tumor-transforming 1	0.619
Cdc20	cell division cycle 20 homolog (S. cerevisiae)	0.603
Racgap1	Rac GTPase-activating protein 1	0.580
Mcm7	minichromosome maintenance complex component 7	0.578
Top2a	topoisomerase (DNA) II alpha	0.563
Ube2c	ubiquitin-conjugating enzyme E2C	0.497
Kifc1	kinesin family member C1	0.400
Npm1	nucleophosmin (nucleolar phosphoprotein B23, numatrin)	0.289
Cand1	cullin-associated and neddylation-dissociated 1	0.232
Kif22	kinesin family member 22	0.166
Traf4af1	TRAF4 associated factor 1	0.144
Tk1	thymidine kinase 1, soluble	0.136
Cdca3	cell division cycle associated 3	0.126
Cdkn3	cyclin-dependent kinase inhibitor 3	0.115
Ccnb1	cyclin B1	0.112
Depdc1	DEP domain containing 1	0.097
Hmmr	hyaluronan mediated motility receptor (RHAMM)	0.095
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	0.091
Serbp1	Serpine1 mRNA binding protein 1	0.087
Spc25	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	0.085
Cdca8	cell division cycle associated 8	0.082
Prc1	protein regulator of cytokinesis 1	0.081
Calm2	calmodulin 2	0.080
Armcx1	armadillo repeat containing, X-linked 1	0.079
Hnrnpr	heterogeneous nuclear ribonucleoprotein R	0.075
LOC683077	similar to praja1, RING-H2 motif containing	0.073
Rrm2	ribonucleotide reductase M2	0.068
Ppp1cb	protein phosphatase 1, catalytic subunit, beta isoform	0.068
Mcm6	minichromosome maintenance complex component 6	0.066
Anp32e	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.065
Cdk1	cyclin-dependent kinase 1	0.065
Sf3b4	splicing factor 3b, subunit 4	0.064
Aurkb	aurora kinase B	0.062	Fly
Hmgb2	high mobility group box 2	0.061
Cdc42	cell division cycle 42 (GTP binding protein)	0.061
Birc5	baculoviral IAP repeat-containing 5	0.061
Asf1b	ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	0.058	Human
Kif2c	kinesin family member 2C	0.057
Plscr3	phospholipid scramblase 3	0.056
Smc1a	structural maintenance of chromosomes 1A	0.051
Copg	coatomer protein complex, subunit gamma	0.051
Ssrp1	structure specific recognition protein 1	0.051
Ccne1	cyclin E1	0.049
Phax	phosphorylated adaptor for RNA export	0.047
Tspyl1	TSPY-like 1	0.046
Serinc1	serine incorporator 1	0.046
Ncl	nucleolin	0.045
Stmn1	stathmin 1	0.045
Hnrnpf	heterogeneous nuclear ribonucleoprotein F	0.044
Parp1	poly (ADP-ribose) polymerase 1	0.044
Tmpo	thymopoietin	0.044
Nap1l2	nucleosome assembly protein 1-like 2	0.044	Fly
Znf654	zinc finger protein 654	0.042
Troap	trophinin associated protein	0.042
Tceal1	transcription elongation factor A (SII)-like 1	0.042
Ppp1cc	protein phosphatase 1, catalytic subunit, gamma isoform	0.039	Fly
Hdac2	histone deacetylase 2	0.039
Ube2i	ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast)	0.038
Blmh	bleomycin hydrolase	0.036
Fen1	flap structure-specific endonuclease 1	0.034
Smarcb1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	0.033
Cep57	centrosomal protein 57	0.033
Melk	maternal embryonic leucine zipper kinase	0.033
Sfpq	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	0.032
Ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.031
Dlgap5	discs, large (Drosophila) homolog-associated protein 5	0.031
Hnrpm	heterogeneous nuclear ribonucleoprotein M	0.031
Pcyox1	prenylcysteine oxidase 1	0.030
LOC680155	hypothetical protein LOC680155	0.030
Lsm14a	LSM14A, SCD6 homolog A (S. cerevisiae)	0.030
LOC682967	similar to Protein disulfide-isomerase TXNDC10 precursor (Thioredoxin domain-containing protein 10)	0.030
Fbxo11	F-box protein 11	0.030
H2afz	H2A histone family, member Z	0.029
Rcn2	reticulocalbin 2, EF-hand calcium binding domain	0.029
Nap1l3	nucleosome assembly protein 1-like 3	0.029	Fly
Cks2	CDC28 protein kinase regulatory subunit 2	0.028
Tusc3	tumor suppressor candidate 3	0.027
Gdap1	ganglioside-induced differentiation-associated-protein 1	0.027
Aurka	aurora kinase A	0.027	Worm
Ddx54	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	0.027
Eif1ay	eukaryotic translation initiation factor 1A, Y-linked	0.026
LOC100364500	RT1 class I, locus CE11-like	0.026
Sbf1	SET binding factor 1	0.026
Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	0.026
Snd1	staphylococcal nuclease and tudor domain containing 1	0.025
Pcna	proliferating cell nuclear antigen	0.025
Sumo1	SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	0.024
Plk1	polo-like kinase 1 (Drosophila)	0.024
Hspd1	heat shock protein 1 (chaperonin)	0.024
Gcs1	glucosidase 1	0.024
Vdac3	voltage-dependent anion channel 3	0.024
Casp2	caspase 2	0.024
Bub1b	budding uninhibited by benzimidazoles 1 homolog, beta (S. cerevisiae)	0.023
Trim32	tripartite motif-containing 32	0.023
Hist1h1a	histone cluster 1, H1a	0.023
Sp110	SP110 nuclear body protein	0.023
Spg20	spastic paraplegia 20 (Troyer syndrome) homolog (human)	0.023
Ube2t	ubiquitin-conjugating enzyme E2T (putative)	0.023
Ttc30b	tetratricopeptide repeat domain 30B	0.022
Kif18b	kinesin family member 18B	0.022
Mageh1	melanoma antigen, family H, 1	0.021
Hmgb1	high mobility group box 1	0.021
Luc7l2	LUC7-like 2 (S. cerevisiae)	0.021
Ywhaq	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	0.021
Prdm2	PR domain containing 2, with ZNF domain	0.021
Psip1	PC4 and SFRS1 interacting protein 1	0.020
Cul1	cullin 1	0.020
Mapk7	mitogen-activated protein kinase 7	0.020
Nudt11	nudix (nucleoside diphosphate linked moiety X)-type motif 11	0.020
Sf3b2	splicing factor 3b, subunit 2	0.019
Fn3krp	fructosamine-3-kinase-related protein	0.019
Tspan3	tetraspanin 3	0.019
Tcfe2a	transcription factor E2a	0.019
Pbk	PDZ binding kinase	0.019
Dynll1	dynein light chain LC8-type 1	0.019
Rgs19	regulator of G-protein signaling 19	0.019
Safb	scaffold attachment factor B	0.018
Fkbp4	FK506 binding protein 4	0.018
Clns1a	chloride channel, nucleotide-sensitive, 1A	0.018
Nrd1	nardilysin 1	0.018
Plk4	polo-like kinase 4 (Drosophila)	0.018
Cdca2	cell division cycle associated 2	0.017
Dnm2	dynamin 2	0.017
Brp16	brain protein 16	0.017
Ubtf	upstream binding transcription factor, RNA polymerase I	0.017
Phf12	PHD finger protein 12	0.017
Trappc1	trafficking protein particle complex 1	0.017
Nthl1	nth (endonuclease III)-like 1 (E.coli)	0.017
Rpa2	replication protein A2	0.017
Pard3	par-3 (partitioning defective 3) homolog (C. elegans)	0.017
Fgf13	fibroblast growth factor 13	0.017
Kif4	kinesin family member 4	0.017
Klhl9	kelch-like 9 (Drosophila)	0.017
Ehmt1	euchromatic histone-lysine N-methyltransferase 1	0.017
Yipf5	Yip1 domain family, member 5	0.017
LOC100364212	heterogeneous nuclear ribonucleoprotein K-like	0.017
Rcbtb1	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	0.016
Cdk2	cyclin dependent kinase 2	0.016	Rat
MGC112830	similar to transcription factor	0.016
Ranbp6	RAN binding protein 6	0.016
Prim2	primase, DNA, polypeptide 2	0.016
Fam76b	family with sequence similarity 76, member B	0.016
Polr2b	polymerase (RNA) II (DNA directed) polypeptide B	0.016
Mier1	mesoderm induction early response 1 homolog (Xenopus laevis)	0.016
Smc5	structural maintenance of chromosomes 5	0.016
Rad51ap1	RAD51 associated protein 1	0.015
Slc25a16	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	0.015
Smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.015	Yeast
St5	suppression of tumorigenicity 5	0.015
Dhx9	DEAH (Asp-Glu-Ala-His) box polypeptide 9	0.015
Acyp2	acylphosphatase 2, muscle type	0.015
Ppif	peptidylprolyl isomerase F	0.015
Ubr4	ubiquitin protein ligase E3 component n-recognin 4	0.015
Mtmr6	myotubularin related protein 6	0.015
Rara	retinoic acid receptor, alpha	0.015
Cnot1	CCR4-NOT transcription complex, subunit 1	0.015
Mark2	MAP/microtubule affinity-regulating kinase 2	0.015
Gtpbp1	GTP binding protein 1	0.015
Hdlbp	high density lipoprotein binding protein	0.015	Fly
Metap2	methionyl aminopeptidase 2	0.015
Slc35b4	solute carrier family 35, member B4	0.015
Matr3	matrin 3	0.015
Stat2	signal transducer and activator of transcription 2	0.014
Ect2	epithelial cell transforming sequence 2 oncogene	0.014
Ptbp1	polypyrimidine tract binding protein 1	0.014
Espl1	extra spindle pole bodies homolog 1 (S. cerevisiae)	0.014
Ripk3	receptor-interacting serine-threonine kinase 3	0.014
LOC689399	hypothetical protein LOC689399	0.014
Zfp26	zinc finger protein 26	0.013
Rad21	RAD21 homolog (S. pombe)	0.013
Trappc2	trafficking protein particle complex 2	0.013
Madd	MAP-kinase activating death domain	0.013
Cnot7	CCR4-NOT transcription complex, subunit 7	0.013
Gabpa	GA binding protein transcription factor, alpha subunit	0.013
Dnajc6	DnaJ (Hsp40) homolog, subfamily C, member 6	0.013
MGC105560	similar to Hypothetical protein BC014729	0.013
Galnt11	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)	0.013
Krit1	KRIT1, ankyrin repeat containing	0.013
Fundc1	FUN14 domain containing 1	0.013
Sf1	splicing factor 1	0.013
Wdr5	WD repeat domain 5	0.013
March8	membrane-associated ring finger (C3HC4) 8	0.013
Klhl7	kelch-like 7 (Drosophila)	0.013
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	0.013
Mrpl10	mitochondrial ribosomal protein L10	0.012
Bak1	BCL2-antagonist/killer 1	0.012
Vars	valyl-tRNA synthetase	0.012
Tmem55a	transmembrane protein 55A	0.012
Doc2a	double C2-like domains, alpha	0.012
Ubl3	ubiquitin-like 3	0.012
Khdrbs2	KH domain containing, RNA binding, signal transduction associated 2	0.012
Nusap1	nucleolar and spindle associated protein 1	0.012
Lbr	lamin B receptor	0.012
Usf2	upstream transcription factor 2, c-fos interacting	0.012
Bat3	HLA-B-associated transcript 3	0.012
LOC687346	similar to BRCA1-associated protein (BRAP2) (Impedes mitogenic signal propagation) (IMP)	0.012
Csk	c-src tyrosine kinase	0.012
Mrps2	mitochondrial ribosomal protein S2	0.012
Ttk	Ttk protein kinase	0.012
Sec31a	SEC31 homolog A (S. cerevisiae)	0.012
Arl6	ADP-ribosylation factor-like 6	0.012
Efha2	EF hand domain family, member A2	0.012
Mettl9	methyltransferase like 9	0.012
Gtf2i	general transcription factor II I	0.012
Pcdha4	protocadherin alpha 4	0.012
Cenpt	centromere protein T	0.012
Sncb	synuclein, beta	0.012
Adar	adenosine deaminase, RNA-specific	0.012
Toe1	target of EGR1, member 1 (nuclear)	0.011
Ccnd3	cyclin D3	0.011
Vsnl1	visinin-like 1	0.011
Mettl14	methyltransferase like 14	0.011
Cbr1	carbonyl reductase 1	0.011
Tsr2	TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	0.011
Cdkn2c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	0.011
Flt1	FMS-related tyrosine kinase 1	0.011
Gosr2	golgi SNAP receptor complex member 2	0.011
Scg2	secretogranin II (chromogranin C)	0.011
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1	0.011
Pold1	polymerase (DNA directed), delta 1, catalytic subunit	0.011
Zcchc12	zinc finger, CCHC domain containing 12	0.011
Ampd2	adenosine monophosphate deaminase 2 (isoform L)	0.011
Cebpa	CCAAT/enhancer binding protein (C/EBP), alpha	0.011
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12	0.011
Ptbp2	polypyrimidine tract binding protein 2	0.011
Ppp4r1	protein phosphatase 4, regulatory subunit 1	0.011
Astn1	astrotactin 1	0.011
Hirip3	HIRA interacting protein 3	0.011
Mesdc2	mesoderm development candidate 2	0.011
Timeless	timeless homolog (Drosophila)	0.011
Vps37b	vacuolar protein sorting 37 homolog B (S. cerevisiae)	0.011
Traf4	Tnf receptor associated factor 4	0.011
Ssr1	signal sequence receptor, alpha	0.011
Itpk1	inositol 1,3,4-triphosphate 5/6 kinase	0.011
Znf763	zinc finger protein 763	0.011
Lsm2	LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)	0.011
Dhfr	dihydrofolate reductase	0.011
Depdc1b	DEP domain containing 1B	0.011
Hnrnpa1	heterogeneous nuclear ribonucleoprotein A1	0.011
Nomo1	nodal modulator 1	0.011
Hnrpd	heterogeneous nuclear ribonucleoprotein D	0.011
Ube2a	ubiquitin-conjugating enzyme E2A (RAD6 homolog)	0.011
Tmco3	transmembrane and coiled-coil domains 3	0.011
Rxra	retinoid X receptor alpha	0.011
Ccng1	cyclin G1	0.011
Arid2	AT rich interactive domain 2 (Arid-rfx like)	0.011
Prim1	DNA primase, p49 subunit	0.011
Nr2f6	nuclear receptor subfamily 2, group F, member 6	0.010
Gemin4	gem (nuclear organelle) associated protein 4	0.010
Sgpp1	sphingosine-1-phosphate phosphatase 1	0.010
Coq2	coenzyme Q2 homolog, prenyltransferase (yeast)	0.010
Cops7b	COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)	0.010
Ngly1	N-glycanase 1	0.010
Tfip11	tuftelin interacting protein 11	0.010
Dcaf15	DDB1 and CUL4 associated factor 15	0.010
Tm9sf2	transmembrane 9 superfamily member 2	0.010
Fbxw4	F-box and WD repeat domain containing 4	0.010
Dhx38	DEAH (Asp-Glu-Ala-His) box polypeptide 38	0.010
Plekha1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	0.010
Atp2a3	ATPase, Ca++ transporting, ubiquitous	0.010
Appbp2	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	0.010
RGD1563106	similar to novel protein	0.010
Arih2	ariadne homolog 2 (Drosophila)	0.010
Smn1	survival motor neuron 1	0.010
Glod4	glyoxalase domain containing 4	0.010
Gtf3c3	general transcription factor IIIC, polypeptide 3	0.010
Rnf180	ring finger protein 180	0.010