IMP: Integrative Multi-species Prediction

Rattus norvegicus

25 genes annotated in rat

microtubule cytoskeleton organization

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.

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Known genes in the process in ratInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "microtubule cytoskeleton organization"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "microtubule cytoskeleton organization" (in gray)

Name	Description	Probability	Func Analog Organism
Rpl28	ribosomal protein L28	0.129
Dync1h1	dynein cytoplasmic 1 heavy chain 1	0.125
Atp1a1	ATPase, Na+/K+ transporting, alpha 1 polypeptide	0.094
Arf6	ADP-ribosylation factor 6	0.089
Pfn1	profilin 1	0.078
Cdc20	cell division cycle 20 homolog (S. cerevisiae)	0.077
Grin2b	glutamate receptor, ionotropic, N-methyl D-aspartate 2B	0.077
Rab11a	RAB11a, member RAS oncogene family	0.072	Fly
Top2a	topoisomerase (DNA) II alpha	0.070
Cltc	clathrin, heavy chain (Hc)	0.058
Ppp1cb	protein phosphatase 1, catalytic subunit, beta isoform	0.057
Kpnb1	karyopherin (importin) beta 1	0.057
Jak1	Janus kinase 1	0.055
Ppm1a	protein phosphatase 1A, magnesium dependent, alpha isoform	0.051
Gnb2l1	guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1	0.048
Psmc2	proteasome (prosome, macropain) 26S subunit, ATPase 2	0.045
Cct3	chaperonin containing Tcp1, subunit 3 (gamma)	0.045	Worm Fly
Rps5	ribosomal protein S5	0.045
Rplp0	ribosomal protein, large, P0	0.043
Rhoa	ras homolog gene family, member A	0.039
Dcaf15	DDB1 and CUL4 associated factor 15	0.035
Pak2	p21 protein (Cdc42/Rac)-activated kinase 2	0.035
Exoc5	exocyst complex component 5	0.034
Psma3	proteasome (prosome, macropain) subunit, alpha type 3	0.034
Dlgap5	discs, large (Drosophila) homolog-associated protein 5	0.034
Dync1i2	dynein cytoplasmic 1 intermediate chain 2	0.033	Fly
Ak1	adenylate kinase 1	0.033
Cryab	crystallin, alpha B	0.032
Tecr	trans-2,3-enoyl-CoA reductase	0.032
Foxm1	forkhead box M1	0.032
Birc5	baculoviral IAP repeat-containing 5	0.031
Ppp1ca	protein phosphatase 1, catalytic subunit, alpha isoform	0.031
Pttg1	pituitary tumor-transforming 1	0.030
Psma5	proteasome (prosome, macropain) subunit, alpha type 5	0.030
Taok1	TAO kinase 1	0.030
Traf4af1	TRAF4 associated factor 1	0.030
Cdca3	cell division cycle associated 3	0.029
Map1a	microtubule-associated protein 1A	0.028
Klc2	kinesin light chain 2	0.028
Pex5l	peroxisomal biogenesis factor 5-like	0.028
Ube2b	ubiquitin-conjugating enzyme E2B (RAD6 homolog, S. cerevisiae)	0.028	Mouse Fly
Atp2b4	ATPase, Ca++ transporting, plasma membrane 4	0.028
Mll5	myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)	0.028
Rpl18	ribosomal protein L18	0.028
Trpc4	transient receptor potential cation channel, subfamily C, member 4	0.027
Cux1	cut-like homeobox 1	0.027
Psmd4	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	0.027
Ube2c	ubiquitin-conjugating enzyme E2C	0.027
LOC689399	hypothetical protein LOC689399	0.026
Psmb9	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	0.026
Hspb1	heat shock protein 1	0.026	Rat
Dgki	diacylglycerol kinase, iota	0.026
Ppp2r1a	protein phosphatase 2 (formerly 2A), regulatory subunit A, alpha isoform	0.026
Dynll1	dynein light chain LC8-type 1	0.025
Bub1b	budding uninhibited by benzimidazoles 1 homolog, beta (S. cerevisiae)	0.025
Vamp1	vesicle-associated membrane protein 1	0.025
Eif2c2	eukaryotic translation initiation factor 2C, 2	0.025
Mapk3	mitogen activated protein kinase 3	0.024
Rplp2	ribosomal protein, large P2	0.024
Kif2c	kinesin family member 2C	0.024	Human Fly
Fgfr1	Fibroblast growth factor receptor 1	0.024
Csda	cold shock domain protein A	0.024
Map2k2	mitogen activated protein kinase kinase 2	0.024
Adam2	ADAM metallopeptidase domain 2	0.024
Hnrnpab	heterogeneous nuclear ribonucleoprotein A/B	0.024
Mapk1	mitogen activated protein kinase 1	0.024
Hsp90ab1	heat shock protein 90 alpha (cytosolic), class B member 1	0.023
Akt1	v-akt murine thymoma viral oncogene homolog 1	0.023
Atp6v0a1	ATPase, H+ transporting, lysosomal V0 subunit A1	0.023
Psmc3	proteasome (prosome, macropain) 26S subunit, ATPase 3	0.023
Hnrnpc	heterogeneous nuclear ribonucleoprotein C (C1/C2)	0.022
Vasp	vasodilator-stimulated phosphoprotein	0.022
Cnbp	CCHC-type zinc finger, nucleic acid binding protein	0.022
LOC100361879	ATP synthase subunit epsilon, mitochondrial-like	0.022
Pdk2	pyruvate dehydrogenase kinase, isozyme 2	0.022
Rnf4	ring finger protein 4	0.022	Human
Oaz1	ornithine decarboxylase antizyme 1	0.022
Pdcd6	programmed cell death 6	0.021
Azin1	antizyme inhibitor 1	0.021
Cacnb1	calcium channel, voltage-dependent, beta 1 subunit	0.021
Ube2t	ubiquitin-conjugating enzyme E2T (putative)	0.021
Actn4	actinin alpha 4	0.021
Cap1	CAP, adenylate cyclase-associated protein 1 (yeast)	0.021
Ube2i	ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast)	0.021	Yeast
Psmd8	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	0.021
Cct5	chaperonin containing Tcp1, subunit 5 (epsilon)	0.021	Fly
Sfrs2	splicing factor, arginine/serine-rich 2	0.020
Ptov1	prostate tumor overexpressed 1	0.020
Uhmk1	U2AF homology motif (UHM) kinase 1	0.020
Mfn2	mitofusin 2	0.019
Zc3h7b	zinc finger CCCH-type containing 7B	0.019
Smc5	structural maintenance of chromosomes 5	0.019
Casp2	caspase 2	0.019
Eif3s6ip	eukaryotic translation initiation factor 3, subunit 6 interacting protein	0.019
Spock2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	0.019
Smu1	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	0.019
Mapre1	microtubule-associated protein, RP/EB family, member 1	0.018	Human Fly
Myo1b	myosin Ib	0.018
Vdac1	voltage-dependent anion channel 1	0.018
Scaf1	SR-related CTD-associated factor 1	0.018
Hmmr	hyaluronan mediated motility receptor (RHAMM)	0.018
Myh9	myosin, heavy chain 9, non-muscle	0.018	Mouse
Exoc7	exocyst complex component 7	0.018
Ywhaq	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	0.018
Klc1	kinesin light chain 1	0.018
Akt2	v-akt murine thymoma viral oncogene homolog 2	0.018
Pebp1	phosphatidylethanolamine binding protein 1	0.018
Ube2a	ubiquitin-conjugating enzyme E2A (RAD6 homolog)	0.018
Psmc4	proteasome (prosome, macropain) 26S subunit, ATPase, 4	0.018
Impdh2	IMP (inosine monophosphate) dehydrogenase 2	0.018
Kif1b	kinesin family member 1B	0.017
Cnga1	cyclic nucleotide gated channel alpha 1	0.017
Gabra5	gamma-aminobutyric acid (GABA) A receptor, alpha 5	0.017
Emp1	epithelial membrane protein 1	0.017
Psmb3	proteasome (prosome, macropain) subunit, beta type 3	0.017
Ywhab	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	0.017
Oprl1	opiate receptor-like 1	0.017
Gna12	guanine nucleotide binding protein (G protein) alpha 12	0.017
Trim28	tripartite motif-containing 28	0.017
Itgb1	integrin, beta 1	0.017
Nsfl1c	NSFL1 (p97) cofactor (p47)	0.017
Psmb1	proteasome (prosome, macropain) subunit, beta type 1	0.017
Ptpn18	protein tyrosine phosphatase, non-receptor type 18	0.017
Sel1l	sel-1 suppressor of lin-12-like (C. elegans)	0.017
Pcna	proliferating cell nuclear antigen	0.016
Tpm3	tropomyosin 3, gamma	0.016
Cd82	Cd82 molecule	0.016
Rab35	RAB35, member RAS oncogene family	0.016
Scamp2	secretory carrier membrane protein 2	0.016
Map1lc3a	microtubule-associated protein 1 light chain 3 alpha	0.016
Prrx1	paired related homeobox 1	0.016
Ankrd13a	ankyrin repeat domain 13a	0.016
Jtb	jumping translocation breakpoint	0.016
Nefl	neurofilament, light polypeptide	0.015	Mouse
Sv2a	synaptic vesicle glycoprotein 2a	0.015
Psmc1	proteasome (prosome, macropain) 26S subunit, ATPase, 1	0.015	Fly
Kcnmb1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	0.015
Epm2aip1	EPM2A (laforin) interacting protein 1	0.015
Tcp1	t-complex 1	0.015	Fly
Anapc2	anaphase promoting complex subunit 2	0.015
Baiap2	BAI1-associated protein 2	0.015
Stxbp1	syntaxin binding protein 1	0.015
Dnaja2	DnaJ (Hsp40) homolog, subfamily A, member 2	0.015
Sf3a3	splicing factor 3a, subunit 3	0.015
Apc	adenomatous polyposis coli	0.015	Human Fly
Psmd2	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	0.015
Cycs	cytochrome c, somatic	0.015
Racgap1	Rac GTPase-activating protein 1	0.015
Mki67	antigen identified by monoclonal antibody Ki-67	0.015
Plrg1	pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	0.015
Supt5h	suppressor of Ty 5 homolog (S. cerevisiae)	0.015
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	0.015
Nsf	N-ethylmaleimide-sensitive factor	0.015
Msn	moesin	0.015	Fly
Spock1	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	0.015
Ppm1g	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	0.015
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	0.014
Stxbp5	syntaxin binding protein 5 (tomosyn)	0.014
Hdlbp	high density lipoprotein binding protein	0.014
Nup88	nucleoporin 88	0.014
Xiap	X-linked inhibitor of apoptosis	0.014
Cdkn3	cyclin-dependent kinase inhibitor 3	0.014
Txnrd1	thioredoxin reductase 1	0.014
Ptprs	protein tyrosine phosphatase, receptor type, S	0.014
LOC100360501	ribonuclease inhibitor-like	0.014
LOC100360843	ribosomal protein S19-like	0.014
Oprd1	opioid receptor, delta 1	0.014
Slc6a17	solute carrier family 6 (neurotransmitter transporter), member 17	0.014
Tox4	TOX high mobility group box family member 4	0.014
Cdk1	cyclin-dependent kinase 1	0.014	Yeast
Gjb3	gap junction protein, beta 3	0.014
Dag1	dystroglycan 1 (dystrophin-associated glycoprotein 1)	0.013
Rps25	ribosomal protein s25	0.013
Nrd1	nardilysin 1	0.013
Inha	inhibin alpha	0.013
RGD1307799	similar to RIKEN cDNA 2400003C14	0.013
Glg1	golgi apparatus protein 1	0.013
Ssh3	slingshot homolog 3 (Drosophila)	0.013
Wdr1	WD repeat domain 1	0.013
RGD1309414	similar to KIAA0913 protein	0.013
Coro1b	coronin, actin-binding protein, 1B	0.013
Ppm1b	protein phosphatase 1B, magnesium dependent, beta isoform	0.013
Pfkm	phosphofructokinase, muscle	0.013
Nxt1	NTF2-like export factor 1	0.013
Mlf2	myeloid leukemia factor 2	0.013
Dlg1	discs, large homolog 1 (Drosophila)	0.013	Fly
Socs5	suppressor of cytokine signaling 5	0.013
Arrb2	arrestin, beta 2	0.013
Ppp5c	protein phosphatase 5, catalytic subunit	0.013
Fau	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed	0.013	Fly
Cdk105	CDK105 protein	0.013
Tcof1	Treacher Collins-Franceschetti syndrome 1 homolog (human)	0.012
Eif4h	eukaryotic translation initiation factor 4H	0.012
Bcat1	branched chain aminotransferase 1, cytosolic	0.012
Scarb1	scavenger receptor class B, member 1	0.012
Pkia	protein kinase (cAMP-dependent, catalytic) inhibitor alpha	0.012
Slc2a4	solute carrier family 2 (facilitated glucose transporter), member 4	0.012
Slc25a5	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5	0.012
Cdca2	cell division cycle associated 2	0.012
Rps17	ribosomal protein S17	0.012
Sirt2	sirtuin (silent mating type information regulation 2 homolog) 2 (S. cerevisiae)	0.012	Mouse
Troap	trophinin associated protein	0.012
Adar	adenosine deaminase, RNA-specific	0.012
Rhob	ras homolog gene family, member B	0.012
Apobec2	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2	0.012
Ywhaz	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	0.012
Psma2	proteasome (prosome, macropain) subunit, alpha type 2	0.012	Fly
Strn4	striatin, calmodulin binding protein 4	0.012
Cct2	chaperonin containing TCP1, subunit 2 (beta)	0.012	Fly
Pmpcb	peptidase (mitochondrial processing) beta	0.012
Nptxr	neuronal pentraxin receptor	0.012
Ubc	ubiquitin C	0.012
Rem2	RAS (RAD and GEM) like GTP binding 2	0.012
Depdc1	DEP domain containing 1	0.012
Ccnb1	cyclin B1	0.012	Human Yeast Fly
Bap1	BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)	0.012
Tgfb1	transforming growth factor, beta 1	0.012
Ppp2r5b	protein phosphatase 2, regulatory subunit B', beta isoform	0.012
Adam10	ADAM metallopeptidase domain 10	0.012
Ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.012
Ppp2r2a	protein phosphatase 2 (formerly 2A), regulatory subunit B, alpha isoform	0.012
Dhdpsl	dihydrodipicolinate synthase-like, mitochondrial	0.012
Acr	acrosin	0.012
Psmb4	proteasome (prosome, macropain) subunit, beta type 4	0.012
Psmc5	proteasome (prosome, macropain) 26S subunit, ATPase, 5	0.012
Asna1	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	0.012
Nos3	nitric oxide synthase 3, endothelial cell	0.012
Kars	lysyl-tRNA synthetase	0.012
Btf3	basic transcription factor 3	0.012
Pgam2	phosphoglycerate mutase 2 (muscle)	0.012
Cacna2d3	calcium channel, voltage-dependent, alpha2/delta subunit 3	0.012
LOC362855	P55	0.012
Xpo1	exportin 1, CRM1 homolog (yeast)	0.012	Mouse Fly
Rps13	ribosomal protein S13	0.012
Fgf9	fibroblast growth factor 9	0.012
Igsf1	immunoglobulin superfamily, member 1	0.012
Tpm4	tropomyosin 4	0.011
Fbxw11	F-box and WD repeat domain containing 11	0.011
Dusp11	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	0.011
Kitlg	KIT ligand	0.011
Ube2d2	ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)	0.011
Clasp1	cytoplasmic linker associated protein 1	0.011
Fzr1	fizzy/cell division cycle 20 related 1 (Drosophila)	0.011
RGD1564664	similar to LOC387763 protein	0.011
Psgb1	pregnancy-specific beta 1-glycoprotein	0.011
Mapk8ip3	mitogen-activated protein kinase 8 interacting protein 3	0.011
Nlgn2	neuroligin 2	0.011
Myh10	myosin, heavy chain 10, non-muscle	0.011
Cops7a	COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)	0.011
Pggt1b	protein geranylgeranyltransferase type I, beta subunit	0.011
RGD1309102	similar to TRS85 homolog	0.011
Gpx4	glutathione peroxidase 4	0.011
Psmd13	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	0.011
Uba2	ubiquitin-like modifier activating enzyme 2	0.011
Pfdn2	prefoldin subunit 2	0.011
Rab7a	RAB7A, member RAS oncogene family	0.011
Ccne1	cyclin E1	0.011
Gas2l1	growth arrest-specific 2 like 1	0.011	Human
Trappc9	trafficking protein particle complex 9	0.011
Dym	dymeclin	0.011
Cyth3	cytohesin 3	0.011	Fly
Nudt3	nudix (nucleoside diphosphate linked moiety X)-type motif 3	0.011
Des	desmin	0.011
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	0.011
Mtch2	mitochondrial carrier homolog 2 (C. elegans)	0.011
LOC313672	kazrin	0.011
Sh3glb2	SH3-domain GRB2-like endophilin B2	0.011
Npy5r	neuropeptide Y receptor Y5	0.011
Txnl1	thioredoxin-like 1	0.011
Vars	valyl-tRNA synthetase	0.011
Plk4	polo-like kinase 4 (Drosophila)	0.011	Human Mouse Fly
Pold2	polymerase (DNA directed), delta 2, regulatory subunit	0.011
Serinc3	serine incorporator 3	0.011
LOC100362298	ribosomal protein S18-like	0.011
Stx12	syntaxin 12	0.011
Nexn	nexilin (F actin binding protein)	0.011
Ptf1a	pancreas specific transcription factor, 1a	0.011
Rnps1	ribonucleic acid binding protein S1	0.010
Efhd2	EF-hand domain family, member D2	0.010
Zrsr1	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	0.010
RGD1302996	hypothetical protein MGC:15854	0.010
Arf1	ADP-ribosylation factor 1	0.010
Fkbp1b	FK506 binding protein 1b	0.010
Spire1	spire homolog 1 (Drosophila)	0.010
Als2cr4	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	0.010
Traip	TRAF-interacting protein	0.010
Ptms	parathymosin	0.010
Cacnb4	calcium channel, voltage-dependent, beta 4 subunit	0.010
Flii	flightless I homolog (Drosophila)	0.010
Aldoa	aldolase A, fructose-bisphosphate	0.010
Mbnl2	muscleblind-like 2	0.010
Mark2	MAP/microtubule affinity-regulating kinase 2	0.010	Rat
Siah1a	seven in absentia 1A	0.010
Axin1	axin 1	0.010	Mouse
Stip1	stress-induced phosphoprotein 1	0.010
Mllt10	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	0.010
Rfc4	replication factor C (activator 1) 4	0.010
Sfpq	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	0.010
Jup	junction plakoglobin	0.010
Rab3a	RAB3A, member RAS oncogene family	0.010
Snx4	sorting nexin 4	0.010
Lbr	lamin B receptor	0.010