IMP
Process View
mrna metabolic process
The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
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In addition to gene-name show these genes:
Click on a gene's description to view its network relationships with genes known to be involved in "mrna metabolic process"
| Name | Description | Probability | Func Analog Organism | |
|---|---|---|---|---|
| Rnps1 | ribonucleic acid binding protein S1 | 0.704 | Human | |
| Hnrph1 | heterogeneous nuclear ribonucleoprotein H1 | 0.537 | ||
| Hmgb2 | high mobility group box 2 | 0.305 | ||
| Sfrs2 | splicing factor, arginine/serine-rich 2 | 0.290 | Mouse Fly | |
| Rbmxrtl | RNA binding motif protein, X chromosome retrogene-like | 0.260 | ||
| Tra2b | transformer 2 beta homolog (Drosophila) | 0.243 | Fly | |
| Ccnl1 | cyclin L1 | 0.225 | ||
| Cand1 | cullin-associated and neddylation-dissociated 1 | 0.195 | ||
| Nup88 | nucleoporin 88 | 0.188 | ||
| Sfrs1 | splicing factor, arginine/serine-rich 1 | 0.188 | ||
| Sf3a3 | splicing factor 3a, subunit 3 | 0.175 | ||
| LOC686980 | similar to arsenate resistance protein 2 | 0.151 | ||
| Bat1 | HLA-B associated transcript 1 | 0.132 | Human Yeast Fly | |
| Prpf39 | PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae) | 0.125 | ||
| RGD1565775 | similar to RIKEN cDNA 2810403A07 | 0.115 | ||
| Trim28 | tripartite motif-containing 28 | 0.098 | ||
| Plrg1 | pleiotropic regulator 1, PRL1 homolog (Arabidopsis) | 0.095 | Yeast | |
| Hist1h1a | histone cluster 1, H1a | 0.093 | ||
| Khdrbs1 | KH domain containing, RNA binding, signal transduction associated 1 | 0.088 | ||
| Papola | poly (A) polymerase alpha | 0.086 | ||
| Akap8 | A kinase (PRKA) anchor protein 8 | 0.085 | ||
| Clk1 | CDC-like kinase 1 | 0.080 | ||
| H3f3b | H3 histone, family 3B | 0.079 | ||
| Rsrc2 | arginine/serine-rich coiled-coil 2 | 0.073 | ||
| Fos | FBJ osteosarcoma oncogene | 0.071 | ||
| Ppp1r15a | protein phosphatase 1, regulatory (inhibitor) subunit 15A | 0.069 | ||
| Bud13 | BUD13 homolog (S. cerevisiae) | 0.068 | ||
| Snrpb | small nuclear ribonucleoprotein polypeptides B and B1 | 0.067 | Human | |
| Ruvbl1 | RuvB-like 1 (E. coli) | 0.062 | ||
| Paf1 | Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) | 0.062 | ||
| Hnrnpa1 | heterogeneous nuclear ribonucleoprotein A1 | 0.062 | Fly | |
| Hnrpdl | heterogeneous nuclear ribonucleoprotein D-like | 0.060 | Fly | |
| Wdfy1 | WD repeat and FYVE domain containing 1 | 0.058 | ||
| Hdac1 | histone deacetylase 1 | 0.058 | ||
| Tcea1 | transcription elongation factor A (SII) 1 | 0.057 | ||
| Gtf2e2 | general transcription factor IIE, polypeptide 2, beta | 0.056 | ||
| Ywhaq | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide | 0.056 | ||
| Mrps31 | mitochondrial ribosomal protein S31 | 0.053 | ||
| Hsp90ab1 | heat shock protein 90 alpha (cytosolic), class B member 1 | 0.052 | ||
| Tardbp | TAR DNA binding protein | 0.051 | ||
| Ssrp1 | structure specific recognition protein 1 | 0.051 | ||
| Sfpq | splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) | 0.050 | ||
| Nsf | N-ethylmaleimide-sensitive factor | 0.049 | ||
| Hnrnph3 | heterogeneous nuclear ribonucleoprotein H3 (2H9) | 0.047 | ||
| Ddx17 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 | 0.046 | ||
| Eif4h | eukaryotic translation initiation factor 4H | 0.045 | ||
| Clns1a | chloride channel, nucleotide-sensitive, 1A | 0.042 | ||
| Sfrs3 | splicing factor, arginine/serine-rich 3 | 0.041 | ||
| Sfrs5 | splicing factor, arginine/serine-rich 5 | 0.041 | Fly | |
| Cnbp | CCHC-type zinc finger, nucleic acid binding protein | 0.040 | ||
| Ttc3 | tetratricopeptide repeat domain 3 | 0.040 | ||
| Wbp11 | WW domain binding protein 11 | 0.038 | ||
| Creld2 | cysteine-rich with EGF-like domains 2 | 0.038 | ||
| Eif4a3 | eukaryotic translation initiation factor 4A, isoform 3 | 0.037 | ||
| Tial1 | Tia1 cytotoxic granule-associated RNA binding protein-like 1 | 0.035 | Fly | |
| Arf6 | ADP-ribosylation factor 6 | 0.035 | ||
| Cdc20 | cell division cycle 20 homolog (S. cerevisiae) | 0.034 | ||
| Tra2a | transformer 2 alpha homolog (Drosophila) | 0.034 | Human | |
| Arglu1 | arginine and glutamate rich 1 | 0.033 | ||
| Luc7l | LUC7-like (S. cerevisiae) | 0.032 | ||
| Aqr | aquarius homolog (mouse) | 0.032 | ||
| Cobra1 | cofactor of BRCA1 | 0.032 | ||
| Dhx15 | DEAH (Asp-Glu-Ala-His) box polypeptide 15 | 0.032 | ||
| Rbm8a | RNA binding motif protein 8A | 0.032 | Human | |
| Bcas2 | breast carcinoma amplified sequence 2 | 0.031 | ||
| Racgap1 | Rac GTPase-activating protein 1 | 0.031 | ||
| Hsp90aa1 | heat shock protein 90, alpha (cytosolic), class A member 1 | 0.031 | ||
| Hnrnpa3 | heterogeneous nuclear ribonucleoprotein A3 | 0.031 | ||
| Prmt1 | protein arginine methyltransferase 1 | 0.030 | ||
| Sart3 | squamous cell carcinoma antigen recognized by T-cells 3 | 0.030 | ||
| Tmpo | thymopoietin | 0.030 | ||
| Anp32e | acidic (leucine-rich) nuclear phosphoprotein 32 family, member E | 0.030 | ||
| LOC687711 | similar to small nuclear ribonucleoprotein D3 | 0.029 | ||
| Rbm39 | RNA binding motif protein 39 | 0.028 | Fly | |
| Ccnb1 | cyclin B1 | 0.028 | ||
| Polr2b | polymerase (RNA) II (DNA directed) polypeptide B | 0.027 | ||
| Eef2 | eukaryotic translation elongation factor 2 | 0.027 | ||
| Top2a | topoisomerase (DNA) II alpha | 0.026 | ||
| Ube2c | ubiquitin-conjugating enzyme E2C | 0.025 | ||
| Smarcb1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 | 0.025 | ||
| Nxt1 | NTF2-like export factor 1 | 0.025 | ||
| Rabggtb | Rab geranylgeranyltransferase, beta subunit | 0.025 | ||
| Rab1b | RAB1B, member RAS oncogene family | 0.024 | ||
| Srrm2 | serine/arginine repetitive matrix 2 | 0.024 | ||
| Dkc1 | dyskeratosis congenita 1, dyskerin | 0.024 | ||
| Rev1 | REV1 homolog (S. cerevisiae) | 0.023 | ||
| Zranb2 | zinc finger, RAN-binding domain containing 2 | 0.023 | ||
| Usf2 | upstream transcription factor 2, c-fos interacting | 0.022 | ||
| Ewsr1 | Ewing sarcoma breakpoint region 1 | 0.022 | ||
| Sart1 | squamous cell carcinoma antigen recognized by T cells | 0.022 | ||
| Hmmr | hyaluronan mediated motility receptor (RHAMM) | 0.022 | ||
| Ptma | prothymosin alpha | 0.021 | ||
| Hnrpm | heterogeneous nuclear ribonucleoprotein M | 0.021 | Human | |
| Ylpm1 | YLP motif containing 1 | 0.021 | ||
| Znf830 | zinc finger protein 830 | 0.021 | ||
| Pcna | proliferating cell nuclear antigen | 0.021 | ||
| Ssb | Sjogren syndrome antigen B | 0.021 | ||
| Cdkn3 | cyclin-dependent kinase inhibitor 3 | 0.020 | ||
| Cpd | carboxypeptidase D | 0.020 | ||
| Pttg1 | pituitary tumor-transforming 1 | 0.020 | ||
| Xab2 | XPA binding protein 2 | 0.020 | ||
| Ubtf | upstream binding transcription factor, RNA polymerase I | 0.020 | ||
| Sept6 | septin 6 | 0.020 | ||
| Smndc1 | survival motor neuron domain containing 1 | 0.019 | ||
| Lsm14a | LSM14A, SCD6 homolog A (S. cerevisiae) | 0.019 | ||
| Smad7 | SMAD family member 7 | 0.019 | ||
| Kpnb1 | karyopherin (importin) beta 1 | 0.019 | ||
| Eif5 | eukaryotic translation initiation factor 5 | 0.018 | ||
| Rbm17 | RNA binding motif protein 17 | 0.018 | ||
| Gnl3 | guanine nucleotide binding protein-like 3 (nucleolar) | 0.018 | ||
| Pqbp1 | polyglutamine binding protein 1 | 0.018 | Human Mouse | |
| Tbl1xr1 | transducin (beta)-like 1 X-linked receptor 1 | 0.018 | ||
| Dcun1d5 | DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) | 0.018 | ||
| Ctnnbl1 | catenin, beta like 1 | 0.018 | ||
| Fam136a | family with sequence similarity 136, member A | 0.018 | ||
| Mark3 | MAP/microtubule affinity-regulating kinase 3 | 0.018 | ||
| Mcrs1 | microspherule protein 1 | 0.017 | ||
| Ilf2 | interleukin enhancer binding factor 2 | 0.017 | ||
| LOC689399 | hypothetical protein LOC689399 | 0.017 | ||
| Fen1 | flap structure-specific endonuclease 1 | 0.017 | ||
| Dmap1 | DNA methyltransferase 1-associated protein 1 | 0.017 | ||
| Lyar | Ly1 antibody reactive homolog (mouse) | 0.016 | ||
| Dusp1 | dual specificity phosphatase 1 | 0.016 | ||
| Spc25 | SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) | 0.016 | ||
| Slc24a2 | solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 | 0.016 | ||
| Ptov1 | prostate tumor overexpressed 1 | 0.016 | ||
| Bud31 | BUD31 homolog (S. cerevisiae) | 0.016 | ||
| Cyr61 | cysteine-rich, angiogenic inducer, 61 | 0.016 | ||
| Cpsf7 | cleavage and polyadenylation specific factor 7 | 0.016 | Fly | |
| Ube2v2 | ubiquitin-conjugating enzyme E2 variant 2 | 0.016 | ||
| Nxf1 | nuclear RNA export factor 1 | 0.015 | Fly | |
| Parp2 | poly (ADP-ribose) polymerase 2 | 0.015 | ||
| Asf1b | ASF1 anti-silencing function 1 homolog B (S. cerevisiae) | 0.015 | ||
| Hdgf2 | hepatoma-derived growth factor-related protein 2 | 0.015 | ||
| Safb | scaffold attachment factor B | 0.015 | ||
| Cct3 | chaperonin containing Tcp1, subunit 3 (gamma) | 0.014 | ||
| Ncbp1 | nuclear cap binding protein subunit 1 | 0.014 | ||
| Fyttd1 | forty-two-three domain containing 1 | 0.014 | ||
| Nup85 | nucleoporin 85 | 0.014 | ||
| Nasp | nuclear autoantigenic sperm protein (histone-binding) | 0.014 | ||
| Fus | fusion (involved in t(12;16) in malignant liposarcoma) (human) | 0.014 | ||
| H2afx | H2A histone family, member X | 0.014 | ||
| Hnrpd | heterogeneous nuclear ribonucleoprotein D | 0.014 | Fly | |
| Exosc8 | exosome component 8 | 0.014 | ||
| Smc1a | structural maintenance of chromosomes 1A | 0.014 | ||
| Smn1 | survival motor neuron 1 | 0.014 | Human | |
| Slc1a1 | solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 | 0.014 | ||
| Leo1 | Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) | 0.014 | ||
| Dcaf15 | DDB1 and CUL4 associated factor 15 | 0.014 | ||
| Las1l | LAS1-like (S. cerevisiae) | 0.014 | ||
| Acin1 | apoptotic chromatin condensation inducer 1 | 0.013 | ||
| Hnrnpf | heterogeneous nuclear ribonucleoprotein F | 0.013 | ||
| Hnrnpu | heterogeneous nuclear ribonucleoprotein U | 0.013 | ||
| Pcnxl3 | pecanex-like 3 (Drosophila) | 0.013 | ||
| Thrap3 | thyroid hormone receptor associated protein 3 | 0.013 | ||
| Ppp1r8 | protein phosphatase 1, regulatory (inhibitor) subunit 8 | 0.013 | ||
| Tp53 | tumor protein p53 | 0.013 | ||
| Thop1 | thimet oligopeptidase 1 | 0.013 | ||
| Pom121 | nuclear pore membrane protein 121 | 0.013 | ||
| Ilkap | integrin-linked kinase-associated serine/threonine phosphatase 2C | 0.013 | ||
| Ddx50 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 | 0.013 | ||
| Foxk2 | forkhead box K2 | 0.013 | ||
| Prps1 | phosphoribosyl pyrophosphate synthetase 1 | 0.013 | ||
| Mat2a | methionine adenosyltransferase II, alpha | 0.013 | ||
| Lyn | v-yes-1 Yamaguchi sarcoma viral related oncogene homolog | 0.013 | ||
| Cdc5l | CDC5 cell division cycle 5-like (S. pombe) | 0.013 | ||
| Hnrnpab | heterogeneous nuclear ribonucleoprotein A/B | 0.012 | ||
| Nolc1 | nucleolar and coiled-body phosphoprotein 1 | 0.012 | ||
| Ep400 | E1A binding protein p400 | 0.012 | ||
| Tlk2 | tousled-like kinase 2 | 0.012 | ||
| Mapkapk5 | mitogen-activated protein kinase-activated protein kinase 5 | 0.012 | ||
| Ptms | parathymosin | 0.012 | ||
| Puf60 | poly-U binding splicing factor 60 | 0.012 | Fly | |
| Lta4h | leukotriene A4 hydrolase | 0.012 | ||
| Ppid | peptidylprolyl isomerase D (cyclophilin D) | 0.012 | ||
| Phax | phosphorylated adaptor for RNA export | 0.012 | ||
| LOC687575 | similar to Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) | 0.012 | ||
| Hgs | hepatocyte growth factor-regulated tyrosine kinase substrate | 0.012 | ||
| Pds5a | PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) | 0.012 | ||
| Cct7 | chaperonin containing Tcp1, subunit 7 (eta) | 0.012 | ||
| Akap8l | A kinase (PRKA) anchor protein 8-like | 0.012 | ||
| Smarce1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 | 0.011 | ||
| Rpa2 | replication protein A2 | 0.011 | ||
| Usf1 | upstream transcription factor 1 | 0.011 | ||
| Etnk1 | ethanolamine kinase 1 | 0.011 | ||
| Kifc1 | kinesin family member C1 | 0.011 | ||
| Sfrs6 | splicing factor, arginine/serine-rich 6 | 0.011 | Human | |
| Sumo1 | SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) | 0.011 | ||
| Xrn2 | 5'-3' exoribonuclease 2 | 0.011 | ||
| Mcm6 | minichromosome maintenance complex component 6 | 0.011 | ||
| Cops7a | COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis) | 0.011 | ||
| Rock1 | Rho-associated coiled-coil containing protein kinase 1 | 0.011 | ||
| Hax1 | HCLS1 associated protein X-1 | 0.011 | ||
| Ddx46 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 | 0.011 | Fly | |
| LOC362855 | P55 | 0.011 | ||
| Brd8 | bromodomain containing 8 | 0.011 | ||
| Cttnbp2 | cortactin binding protein 2 | 0.011 | ||
| Dctn1 | dynactin 1 | 0.011 | ||
| Fbxo22 | F-box protein 22 | 0.011 | ||
| Hnrnpc | heterogeneous nuclear ribonucleoprotein C (C1/C2) | 0.011 | Yeast | |
| Kif2c | kinesin family member 2C | 0.010 | ||
| Junb | jun B proto-oncogene | 0.010 | ||
| RGD1306583 | similar to RIKEN cDNA 2410002O22 gene | 0.010 | ||
| LOC684233 | similar to Putative RNA-binding protein 15 (RNA-binding motif protein 15) (One-twenty two protein) | 0.010 | ||
| Fubp1 | far upstream element (FUSE) binding protein 1 | 0.010 | ||
| Nup205 | nucleoporin 205 | 0.010 | ||
| RGD1359529 | similar to chromosome 1 open reading frame 63 | 0.010 | ||
| Sfrs18 | splicing factor, arginine/serine-rich 18 | 0.010 | ||
| Gna12 | guanine nucleotide binding protein (G protein) alpha 12 | 0.010 | ||
| Atg16l1 | ATG16 autophagy related 16-like 1 (S. cerevisiae) | 0.010 | ||
| Brd1 | bromodomain containing 1 | 0.010 | ||
| Sfrs12 | splicing factor, arginine/serine-rich 12 | 0.010 | Fly | |
| LOC681004 | similar to GC-rich sequence DNA-binding factor homolog | 0.010 | ||
| Tubgcp6 | tubulin, gamma complex associated protein 6 | 0.010 |