IMP: Integrative Multi-species Prediction

Rattus norvegicus

18 genes annotated in rat

cellular modified amino acid biosynthetic process

The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents.

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Known genes in the process in ratInclude functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "cellular modified amino acid biosynthetic process"

Show only novel predictionsShow only unknown genesHighlight genes with functional analogs involved in "cellular modified amino acid biosynthetic process" (in gray)

Name	Description	Probability
Txnrd1	thioredoxin reductase 1	0.243
Ubqln1	ubiquilin 1	0.196
Gclc	glutamate-cysteine ligase, catalytic subunit	0.188
Shmt1	serine hydroxymethyltransferase 1 (soluble)	0.174
Pgam2	phosphoglycerate mutase 2 (muscle)	0.152
Gclm	glutamate cysteine ligase, modifier subunit	0.123
Tst	thiosulfate sulfurtransferase	0.090
Alad	aminolevulinate, delta-, dehydratase	0.081
Slc25a10	solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10	0.067
Tfrc	transferrin receptor	0.065
Ahcy	adenosylhomocysteinase	0.060
Pecr	peroxisomal trans-2-enoyl-CoA reductase	0.058
Pctp	phosphatidylcholine transfer protein	0.057
Csnk2b	casein kinase 2, beta polypeptide	0.057
Dph1	DPH1 homolog (S. cerevisiae)	0.056
Ugt1a6	UDP glucuronosyltransferase 1 family, polypeptide A6	0.054
Sh3bgr	SH3 domain binding glutamic acid-rich protein	0.054
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	0.053
Hrsp12	heat-responsive protein 12	0.052
Acy1	aminoacylase 1	0.051
Tff3	trefoil factor 3, intestinal	0.051
Nqo1	NAD(P)H dehydrogenase, quinone 1	0.048
Pygm	phosphorylase, glycogen, muscle	0.046
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12	0.045
Pygb	phosphorylase, glycogen; brain	0.043
Slc7a5	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	0.043
Sf3b3	splicing factor 3b, subunit 3	0.042
Mtpn	myotrophin	0.040
Mgst3	microsomal glutathione S-transferase 3	0.040
Cyp2d2	cytochrome P450, family 2, subfamily d, polypeptide 2	0.039
Krt34	keratin 34	0.039
Ugdh	UDP-glucose dehydrogenase	0.039
LOC100363662	6-phosphogluconate dehydrogenase, decarboxylating-like	0.039
Gsta5	glutathione S-transferase Yc2 subunit	0.038
Coq10b	coenzyme Q10 homolog B (S. cerevisiae)	0.037
Aldh4a1	aldehyde dehydrogenase 4 family, member A1	0.036
Tecr	trans-2,3-enoyl-CoA reductase	0.035
RGD1306682	similar to RIKEN cDNA 1810046J19	0.035
Arl2	ADP-ribosylation factor-like 2	0.035
Hsd17b11	hydroxysteroid (17-beta) dehydrogenase 11	0.035
Atad3a	ATPase family, AAA domain containing 3A	0.034
Rnps1	ribonucleic acid binding protein S1	0.034
Hnf4a	hepatocyte nuclear factor 4, alpha	0.034
Arl5a	ADP-ribosylation factor-like 5A	0.034
Gss	glutathione synthetase	0.032
Pigl	phosphatidylinositol glycan anchor biosynthesis, class L	0.032
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	0.032
Des	desmin	0.031
Srd5a1	steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)	0.031
Mapk6	mitogen-activated protein kinase 6	0.029
Pacs1	phosphofurin acidic cluster sorting protein 1	0.029
Ung	uracil-DNA glycosylase	0.029
Ahr	aryl hydrocarbon receptor	0.029
Akr7a3	aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase)	0.029
Vtcn1	V-set domain containing T cell activation inhibitor 1	0.028
Fen1	flap structure-specific endonuclease 1	0.028
Lhcgr	luteinizing hormone/choriogonadotropin receptor	0.027
Akr7a2	aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)	0.027
Rpa2	replication protein A2	0.027
Sult5a1	sulfotransferase family 5A, member 1	0.026
Odc1	ornithine decarboxylase 1	0.026
Psmd2	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	0.026
Qprt	quinolinate phosphoribosyltransferase	0.025
Reep6	receptor accessory protein 6	0.025
Ube4a	ubiquitination factor E4A (UFD2 homolog, yeast)	0.025
Rhd	Rh blood group, D antigen	0.025
Mybbp1a	MYB binding protein (P160) 1a	0.025
Aldh7a1	aldehyde dehydrogenase 7 family, member A1	0.024
Pgrmc1	progesterone receptor membrane component 1	0.024
Nmu	neuromedin U	0.024
Hn1l	hematological and neurological expressed 1-like	0.024
Eif4h	eukaryotic translation initiation factor 4H	0.023
Ccl28	chemokine (C-C motif) ligand 28	0.023
Mef2d	myocyte enhancer factor 2D	0.022
Polr1b	polymerase (RNA) I polypeptide B	0.022
Hmbs	hydroxymethylbilane synthase	0.022
Sfrs3	splicing factor, arginine/serine-rich 3	0.022
Myl1	myosin, light chain 1	0.022
Rnf5	ring finger protein 5	0.022
Cyp2c23	cytochrome P450, family 2, subfamily c, polypeptide 23	0.022
Pafah1b2	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	0.022
Atp2a3	ATPase, Ca++ transporting, ubiquitous	0.021
Polr1e	polymerase (RNA) I polypeptide E	0.021
Cdcp1	CUB domain containing protein 1	0.021
Pde5a	phosphodiesterase 5A, cGMP-specific	0.021
Fxyd4	FXYD domain-containing ion transport regulator 4	0.021
Aldh18a1	aldehyde dehydrogenase 18 family, member A1	0.021
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)	0.021
Exosc5	exosome component 5	0.020
Phka1	phosphorylase kinase, alpha 1	0.020
Cat	catalase	0.020
Dhrs7c	dehydrogenase/reductase (SDR family) member 7C	0.020
Shmt2	serine hydroxymethyltransferase 2 (mitochondrial)	0.020
Qdpr	quinoid dihydropteridine reductase	0.019
Gja5	gap junction protein, alpha 5	0.019
Josd2	Josephin domain containing 2	0.019
Stub1	STIP1 homology and U-Box containing protein 1	0.019
Asl	argininosuccinate lyase	0.019
Aqp9	aquaporin 9	0.019
Stmn4	stathmin-like 4	0.019
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase	0.019
Krt1	keratin 1	0.019
Faf1	Fas (TNFRSF6) associated factor 1	0.019
Gsta3	glutathione S-transferase A3	0.019
LOC100364854	similar to RIKEN cDNA A430107P09 gene-like	0.018
Auh	AU RNA binding protein/enoyl-coenzyme A hydratase	0.018
Sfpq	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	0.018
Ppif	peptidylprolyl isomerase F	0.018
Cenpi	centromere protein I	0.018
Akr1c14	aldo-keto reductase family 1, member C14	0.018
Pes1	pescadillo homolog 1, containing BRCT domain (zebrafish)	0.018
Slc16a3	solute carrier family 16, member 3 (monocarboxylic acid transporter 4)	0.018
Cyb5a	cytochrome b5 type A (microsomal)	0.018
Pttg1	pituitary tumor-transforming 1	0.018
Pkm2	pyruvate kinase, muscle	0.018
Ivd	isovaleryl coenzyme A dehydrogenase	0.018
Ctrb1	chymotrypsinogen B1	0.018
Gls	glutaminase	0.018
Tmem205	transmembrane protein 205	0.018
St8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	0.018
Ap1s1	adaptor-related protein complex 1, sigma 1 subunit	0.018
Calm4	calmodulin 4	0.018
Cyp11a1	cytochrome P450, family 11, subfamily a, polypeptide 1	0.018
Cox8b	cytochrome c oxidase, subunit VIIIb	0.018
Pklr	pyruvate kinase, liver and RBC	0.017
Slc7a1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	0.017
Sardh	sarcosine dehydrogenase	0.017
Bmp7	bone morphogenetic protein 7	0.017
Gjb3	gap junction protein, beta 3	0.017
Fut1	fucosyltransferase 1	0.017
Slc2a1	solute carrier family 2 (facilitated glucose transporter), member 1	0.017
Slc39a4	solute carrier family 39 (zinc transporter), member 4	0.017
Ccnb1	cyclin B1	0.017
Wdr77	WD repeat domain 77	0.017
Bckdk	branched chain ketoacid dehydrogenase kinase	0.017
Pc	pyruvate carboxylase	0.017
Grwd1	glutamate-rich WD repeat containing 1	0.016
Gcs1	glucosidase 1	0.016
Hyal2	hyaluronoglucosaminidase 2	0.016
Zg16	zymogen granule protein 16	0.016
Tbrg4	transforming growth factor beta regulator 4	0.016
Cryz	crystallin, zeta	0.016
Cdx1	caudal type homeo box 1	0.016
Amd1	adenosylmethionine decarboxylase 1	0.016
Gsta2	glutathione S-transferase A2	0.016
Gstm5	glutathione S-transferase, mu 5	0.016
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	0.015
Rbks	ribokinase	0.015
Gcsh	glycine cleavage system protein H (aminomethyl carrier)	0.015
Krt14	keratin 14	0.015
Slc30a7	solute carrier family 30 (zinc transporter), member 7	0.015
Fancc	Fanconi anemia, complementation group C	0.015
Kifc1	kinesin family member C1	0.015
Asb2	ankyrin repeat and SOCS box-containing 2	0.015
Tmem185b	transmembrane protein 185B	0.015
Mfsd2	major facilitator superfamily domain containing 2	0.015
Bdh1	3-hydroxybutyrate dehydrogenase, type 1	0.015
Zp3	zona pellucida glycoprotein 3 (sperm receptor)	0.015
Krt8	keratin 8	0.015
Bhlha15	basic helix-loop-helix family, member a15	0.015
Fabp6	fatty acid binding protein 6, ileal	0.014
Rcl1	RNA terminal phosphate cyclase-like 1	0.014
Gstm1	glutathione S-transferase mu 1	0.014
Yif1	Yip1 interacting factor homolog (S. cerevisiae)	0.014
Myoz1	myozenin 1	0.014
RGD1308134	similar to RIKEN cDNA 1110020A23	0.014
Muc2	mucin 2, oligomeric mucus/gel-forming	0.014
Cyth2	cytohesin 2	0.014
Lgals7	lectin, galactoside-binding, soluble, 7	0.014
Asns	asparagine synthetase	0.014
Slc30a2	solute carrier family 30 (zinc transporter), member 2	0.014
RGD1563564	similar to GTP-binding protein NGB	0.014
Pdk3	pyruvate dehydrogenase kinase, isozyme 3	0.014
Slc17a1	solute carrier family 17 (sodium phosphate), member 1	0.014
Apeh	N-acylaminoacyl-peptide hydrolase	0.013
LOC100360507	inducible carbonyl reductase-like	0.013
Cdc25a	cell division cycle 25 homolog A (S. pombe)	0.013
Hpgds	hematopoietic prostaglandin D synthase	0.013
Prim1	DNA primase, p49 subunit	0.013
Akr1b8	aldo-keto reductase family 1, member B8	0.013
Crct1	cysteine-rich C-terminal 1	0.013
Farsa	phenylalanyl-tRNA synthetase, alpha subunit	0.013
Rdh10	retinol dehydrogenase 10 (all-trans)	0.013
Smarcb1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	0.013
Car2	carbonic anhydrase II	0.013
Tollip	toll interacting protein	0.013
Creg1	cellular repressor of E1A-stimulated genes 1	0.013
RGD1565496	similar to Butyrate-induced transcript 1	0.013
Atp6ap1	ATPase, H+ transporting, lysosomal accessory protein 1	0.013
Muc4	mucin 4, cell surface associated	0.013
Sfxn1	sideroflexin 1	0.013
Mpzl2	myelin protein zero-like 2	0.013
Fgf9	fibroblast growth factor 9	0.013
Fam83f	family with sequence similarity 83, member F	0.013
Gpx2	glutathione peroxidase 2	0.013
Rlim	ring finger protein, LIM domain interacting	0.013
Tbl3	transducin (beta)-like 3	0.013
Mecr	mitochondrial trans-2-enoyl-CoA reductase	0.013
Gjb2	gap junction protein, beta 2	0.013
Krtap1-5	keratin associated protein 1-5	0.013
Dhcr7	7-dehydrocholesterol reductase	0.013
Aldh9a1	aldehyde dehydrogenase 9 family, member A1	0.013
Sdc4	syndecan 4	0.013
Rnaseh2a	ribonuclease H2, subunit A	0.013
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	0.013
Psmd5	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	0.012
Thoc6	THO complex 6 homolog (Drosophila)	0.012
Atp6ap2	ATPase, H+ transporting, lysosomal accessory protein 2	0.012
Selenbp1	selenium binding protein 1	0.012
Gtpbp4	GTP binding protein 4	0.012
Nlrp6	NLR family, pyrin domain containing 6	0.012
Cds1	CDP-diacylglycerol synthase 1	0.012
Lpo	lactoperoxidase	0.012
LOC100364212	heterogeneous nuclear ribonucleoprotein K-like	0.012
Gaa	glucosidase, alpha, acid	0.012
Enpp3	ectonucleotide pyrophosphatase/phosphodiesterase 3	0.012
Chek1	CHK1 checkpoint homolog (S. pombe)	0.012
Ppyr1	pancreatic polypeptide receptor 1	0.012
Hdac1	histone deacetylase 1	0.012
Cyp3a18	cytochrome P450, family 3, subfamily a, polypeptide 18	0.012
Lat	linker for activation of T cells	0.012
Acta1	actin, alpha 1, skeletal muscle	0.012
Calb2	calbindin 2	0.012
Cyp3a9	cytochrome P450, family 3, subfamily a, polypeptide 9	0.012
Chac2	ChaC, cation transport regulator homolog 2 (E. coli)	0.012
Gabbr1	gamma-aminobutyric acid (GABA) B receptor 1	0.012
Cyp1a1	cytochrome P450, family 1, subfamily a, polypeptide 1	0.012
Tmem120a	transmembrane protein 120A	0.012
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)	0.012
Rexo4	REX4, RNA exonuclease 4 homolog (S. cerevisiae)	0.012
Gch1	GTP cyclohydrolase 1	0.012
Espn	espin	0.012
Znf593	zinc finger protein 593	0.012
Naglt1	Na+ dependent glucose transporter 1	0.012
Fah	fumarylacetoacetate hydrolase	0.012
Slc20a1	solute carrier family 20 (phosphate transporter), member 1	0.012
Nr5a2	nuclear receptor subfamily 5, group A, member 2	0.012
Ctsf	cathepsin F	0.012
Prim2	primase, DNA, polypeptide 2	0.012
Slc16a1	solute carrier family 16, member 1 (monocarboxylic acid transporter 1)	0.012
Prkar2a	protein kinase, cAMP dependent regulatory, type II alpha	0.012
G6pd	glucose-6-phosphate dehydrogenase	0.012
Exosc4	exosome component 4	0.011
Dctn4	dynactin 4	0.011
Minpp1	multiple inositol polyphosphate histidine phosphatase 1	0.011
Ciapin1	cytokine induced apoptosis inhibitor 1	0.011
Slc40a1	solute carrier family 39 (iron-regulated transporter), member 1	0.011
Errfi1	ERBB receptor feedback inhibitor 1	0.011
Phgdh	phosphoglycerate dehydrogenase	0.011
Rc3h2	ring finger and CCCH-type zinc finger domains 2	0.011
Clcnkb	chloride channel Kb	0.011
Tmem199	transmembrane protein 199	0.011
Myh1	myosin, heavy polypeptide 1, skeletal muscle, adult	0.011
Fabp7	fatty acid binding protein 7, brain	0.011
Gstm4	glutathione S-transferase mu 4	0.011
Cgrrf1	cell growth regulator with ring finger domain 1	0.011
Psat1	phosphoserine aminotransferase 1	0.011
Pir	pirin (iron-binding nuclear protein)	0.011
Aimp2	aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	0.011
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	0.011
Nup62	nucleoporin 62	0.011
Casp6	caspase 6	0.011
Cyp2b1	cytochrome P450, family 2, subfamily b, polypeptide 1	0.011
Ptdss1	phosphatidylserine synthase 1	0.011
Psmg2	proteasome (prosome, macropain) assembly chaperone 2	0.011
Yipf1	Yip1 domain family, member 1	0.011
Aldh5a1	aldehyde dehydrogenase 5 family, member A1	0.011
Epcam	epithelial cell adhesion molecule	0.011
Aktip	AKT interacting protein	0.011
Got1	glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)	0.011
Slc3a2	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	0.011
Scgb2a1	secretoglobin, family 2A, member 1	0.011
Mcm6	minichromosome maintenance complex component 6	0.011
Agpat6	1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	0.011
Cth	cystathionase (cystathionine gamma-lyase)	0.011
Chka	choline kinase alpha	0.011
Mb	myoglobin	0.011
Scarb2	scavenger receptor class B, member 2	0.011
Plg	plasminogen	0.011
Ddx54	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	0.011
Mlx	MAX-like protein X	0.011
Kel	Kell blood group, metallo-endopeptidase	0.011
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	0.011
Hmox1	heme oxygenase (decycling) 1	0.011
Pcp4	Purkinje cell protein 4	0.011
Gchfr	GTP cyclohydrolase I feedback regulator	0.011
Ugt1a1	UDP glucuronosyltransferase 1 family, polypeptide A1	0.011
Shisa4	shisa homolog 4 (Xenopus laevis)	0.011
Hacl1	2-hydroxyacyl-CoA lyase 1	0.010
Hcn1	hyperpolarization-activated cyclic nucleotide-gated potassium channel 1	0.010
Asf1b	ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	0.010
Doc2b	double C2-like domains, beta	0.010
Glud1	glutamate dehydrogenase 1	0.010
Gmfb	glia maturation factor, beta	0.010
Wdr46	WD repeat domain 46	0.010
Gpr150	G protein-coupled receptor 150	0.010
Gjb1	gap junction protein, beta 1	0.010
Kcnh4	potassium voltage-gated channel, subfamily H (eag-related), member 4	0.010
Unc5b	unc-5 homolog B (C. elegans)	0.010
Eps8l3	EPS8-like 3	0.010
Msh2	mutS homolog 2 (E. coli)	0.010
Ccnl2	cyclin L2	0.010
Khk	ketohexokinase	0.010
Cela2a	chymotrypsin-like elastase family, member 2A	0.010
Umps	uridine monophosphate synthetase	0.010
Fahd1	fumarylacetoacetate hydrolase domain containing 1	0.010
Fez1	fasciculation and elongation protein zeta 1 (zygin I)	0.010
Rnf19a	ring finger protein 19A	0.010
Slc6a8	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	0.010